" throws SAXParseException, other special entities are parsed correctly.

gistfile1.txt

/**
 * Copyright (C) [2013] [The FURTHeR Project]
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package edu.utah.further.mdr.impl.service.uml;

import java.io.ByteArrayInputStream;
import java.io.IOException;

import javax.xml.namespace.QName;
import javax.xml.stream.XMLInputFactory;
import javax.xml.stream.XMLStreamException;
import javax.xml.stream.XMLStreamReader;
import javax.xml.xquery.XQConnection;
import javax.xml.xquery.XQDataSource;
import javax.xml.xquery.XQException;
import javax.xml.xquery.XQPreparedExpression;
import javax.xml.xquery.XQResultSequence;

import net.xqj.basex.BaseXXQDataSource;

import org.basex.BaseXServer;

/**
 * ...
 * <p>
 * -----------------------------------------------------------------------------------<br>
 * (c) 2008-2012 FURTHeR Project, Health Sciences IT, University of Utah<br>
 * Contact: {@code <further@utah.edu>}<br>
 * Biomedical Informatics, 26 South 2000 East<br>
 * Room 5775 HSEB, Salt Lake City, UT 84112<br>
 * Day Phone: 1-801-581-4080<br>
 * -----------------------------------------------------------------------------------
 * 
 * @author N. Dustin Schultz {@code <dustin.schultz@utah.edu>}
 * @version Jun 7, 2013
 */
public class BugSaxParse
{

  public static void main(final String[] args) throws IOException, XMLStreamException,
			XQException
	{
		final BaseXServer server = new BaseXServer();
		final Thread t = new Thread(server);
		t.start();

		final String problemXml = "<?xml version=\"1.0\" encoding=\"UTF-8\"?><element someAttribute=\"&quot;Escaped but quoted string&quot;\"></element>";
		// &amp; works OK: "<?xml version=\"1.0\" encoding=\"UTF-8\"?><element someAttribute=\"&amp;Escaped but quoted string&amp;\"></element>";
		// &gt; &lt; work OK: "<?xml version=\"1.0\" encoding=\"UTF-8\"?><element someAttribute=\"&lt;Escaped but quoted string&gt;\"></element>";
		// &quot; fails
		
		System.out.println("Try XML: " + problemXml);

		XQConnection conn = null;
		try
		{
			final XQDataSource xqs = new BaseXXQDataSource();
			xqs.setProperty("serverName", "localhost");
			xqs.setProperty("port", "1984");
			xqs.setProperty("user", "admin");
			xqs.setProperty("password", "admin");

			conn = xqs.getConnection();

			final XQPreparedExpression xqpe = conn
					.prepareExpression("declare variable $x as document-node() external; $x");

			final XMLInputFactory factory = XMLInputFactory.newInstance();
			final XMLStreamReader xmlStreamReader = factory
					.createXMLStreamReader(new ByteArrayInputStream(problemXml.getBytes()));

			xqpe.bindDocument(new QName("x"), xmlStreamReader, null);

			final XQResultSequence rs = xqpe.executeQuery();

			while (rs.next())
				System.out.println(rs.getItemAsString(null));

		}
		finally
		{
			if (conn != null)
			{
				conn.close();
			}
			server.stop();
		}
	}
}