file_type_enum.jsonl

{ 
    "name" : "FT ICR-MS analysis results", 
    "description" : "FT ICR-MS-based metabolite assignment results table", 
    "filter" : "{\"url\": {\"$regex\": \"nom\\\\/results\"}, \"description\": {\"$regex\": \"FT ICR-MS\"}}", 
    "id" : "nmdc:sys045mx19"
}
{ 
    "name" : "GC-MS Metabolomics Results", 
    "description" : "GC-MS-based metabolite assignment results table", 
    "filter" : "{\"url\": {\"$regex\": \"metabolomics\\\\/results\"}}", 
    "id" : "nmdc:sys0k0qz84"
}
{ 
    "name" : "Metaproteomics Workflow Statistics", 
    "description" : "Aggregate workflow statistics file", 
    "filter" : "{\"url\": {\"$regex\": \"QC_Metrics.tsv\"}}", 
    "id" : "nmdc:sys0xhc377"
}
{ 
    "name" : "Protein Report", 
    "description" : "Filtered protein report file", 
    "filter" : "{\"url\": {\"$regex\": \"Protein_Report.tsv\"}}", 
    "id" : "nmdc:sys057vk77"
}
{ 
    "name" : "Peptide Report", 
    "description" : "Filtered peptide report file", 
    "filter" : "{\"url\": {\"$regex\": \"Peptide_Report.tsv\"}}", 
    "id" : "nmdc:sys0get757"
}
{ 
    "name" : "Unfiltered Metaproteomics Results", 
    "description" : "MSGFjobs and MASIC output file", 
    "filter" : "{\"url\": {\"$regex\": \"MSGFjobs_MASIC_resultant.tsv\"}}", 
    "id" : "nmdc:sys0c7k698"
}
{ 
    "name" : "Read Count and RPKM", 
    "description" : "Annotation read count and RPKM per feature JSON", 
    "filter" : "{\"url\": {\"$regex\": \"metat_out_json\\\\/output.json\"}}", 
    "id" : "nmdc:sys0bwtc26"
}
{ 
    "name" : "QC non-rRNA R2", 
    "description" : "QC removed rRNA reads (R2) fastq", 
    "filter" : "{\"url\": {\"$regex\": \"filtered_R2.fastq\"}}", 
    "id" : "nmdc:sys0m1zw90"
}
{ 
    "name" : "QC non-rRNA R1", 
    "description" : "QC removed rRNA reads (R1) fastq", 
    "filter" : "{\"url\": {\"$regex\": \"filtered_R1.fastq\"}}", 
    "id" : "nmdc:sys0waxc80"
}
{ 
    "name" : "Metagenome Bins", 
    "description" : "Metagenome bin contigs fasta", 
    "filter" : "{\"url\": {\"$regex\": \"bins\\\\.\\\\d+\\\\.fa\"}}", 
    "id" : "nmdc:sys0fnpe08"
}
{ 
    "name" : "CheckM Statistics", 
    "description" : "CheckM statistics report", 
    "filter" : "{\"url\": {\"$regex\": \"checkm_qa.out\"}}", 
    "id" : "nmdc:sys02jtd90"
}
{ 
    "name" : "Krona Plot", 
    "description" : "[GOTTCHA2] krona plot HTML file", 
    "filter" : "{\"url\": {\"$regex\": \"gottcha2.*krona.html\"}}", 
    "id" : "nmdc:sys0e8ke20"
}
{ 
    "name" : "Krona Plot", 
    "description" : "[Kraken2] krona plot HTML file", 
    "filter" : "{\"url\": {\"$regex\": \"kraken2.*krona.html\"}}", 
    "id" : "nmdc:sys07qxq08"
}
{ 
    "name" : "Classification Report", 
    "description" : "[Kraken2] output report file", 
    "filter" : "{\"url\": {\"$regex\": \"kraken2.*report.tsv\"}}", 
    "id" : "nmdc:sys0rer120"
}
{ 
    "name" : "Taxonomic Classification", 
    "description" : "[Kraken2] output read classification file", 
    "filter" : "{\"url\": {\"$regex\": \"kraken2.*classification.tsv\"}}", 
    "id" : "nmdc:sys0g5ba36"
}
{ 
    "name" : "Krona Plot", 
    "description" : "[Centrifuge] krona plot HTML file", 
    "filter" : "{\"url\": {\"$regex\": \"centrifuge.*krona.html\"}}", 
    "id" : "nmdc:sys0phtn47"
}
{ 
    "name" : "Classification Report", 
    "description" : "[Centrifuge] output report file", 
    "filter" : "{\"url\": {\"$regex\": \"centrifuge.*report.tsv\"}}", 
    "id" : "nmdc:sys0rwwm27"
}
{ 
    "name" : "Taxonomic Classification", 
    "description" : "[Centrifuge] output read classification file", 
    "filter" : "{\"url\": {\"$regex\": \"centrifuge.*classification.tsv\"}}", 
    "id" : "nmdc:sys02s8s66"
}
{ 
    "name" : "Structural Annotation GFF", 
    "description" : "GFF3 format file with structural annotations", 
    "filter" : "{\"url\": {\"$regex\": \"annotation\\\\/.*structural_annotation\\\\.gff\"}}", 
    "id" : "nmdc:sys048rc73"
}
{ 
    "name" : "Functional Annotation GFF", 
    "description" : "GFF3 format file with functional annotations", 
    "filter" : "{\"url\": {\"$regex\": \"annotation\\\\/.*functional_annotation\\\\.gff\"}}", 
    "id" : "nmdc:sys0p27b63"
}
{ 
    "name" : "Annotation Amino Acid FASTA", 
    "description" : "FASTA amino acid file for annotated proteins", 
    "filter" : "{\"url\": {\"$regex\": \"annotation.*\\\\.faa\"}}", 
    "id" : "nmdc:sys03q9811"
}
{ 
    "name" : "Annotation Enzyme Commission", 
    "description" : "Tab delimited file for EC annotation", 
    "filter" : "{\"url\": {\"$regex\": \"_ec.tsv\"}}", 
    "id" : "nmdc:sys08bv133"
}
{ 
    "name" : "Annotation KEGG Orthology", 
    "description" : "Tab delimited file for KO annotation", 
    "filter" : "{\"url\": {\"$regex\": \"_ko.tsv\"}}", 
    "id" : "nmdc:sys02hhk31"
}
{ 
    "name" : "Assembly Coverage BAM", 
    "description" : "Sorted bam file of reads mapping back to the final assembly", 
    "filter" : "{\"url\": {\"$regex\": \"pairedMapped_sorted.bam\"}}", 
    "id" : "nmdc:sys05yvx07"
}
{ 
    "name" : "Assembly AGP", 
    "description" : "An AGP format file describes the assembly", 
    "filter" : "{\"url\": {\"$regex\": \"assembly.agp\"}}", 
    "id" : "nmdc:sys0mfsa04"
}
{ 
    "name" : "Assembly Scaffolds", 
    "description" : "Final assembly scaffolds fasta", 
    "filter" : "{\"url\": {\"$regex\": \"assembly_scaffolds.fna\"}}", 
    "id" : "nmdc:sys07m9x68"
}
{ 
    "name" : "Assembly Contigs", 
    "description" : "Final assembly contigs fasta", 
    "filter" : "{\"url\": {\"$regex\": \"assembly_contigs.fna\"}}", 
    "id" : "nmdc:sys09dap71"
}
{ 
    "name" : "Assembly Coverage Stats", 
    "description" : "Assembled contigs coverage information", 
    "filter" : "{\"url\": {\"$regex\": \"mapping_stats.txt\"}}", 
    "id" : "nmdc:sys0gxse30"
}
{ 
    "name" : "Filtered Sequencing Reads", 
    "description" : "Reads QC result fastq (clean data)", 
    "filter" : "{\"url\": {\"$regex\": \"filtered.fastq.gz\"}}", 
    "id" : "nmdc:sys0h71d38"
}
{ 
    "name" : "QC Statistics", 
    "description" : "Reads QC summary statistics", 
    "filter" : "{\"url\": {\"$regex\": \"filterStats.txt\"}}", 
    "id" : "nmdc:sys0tkzw20"
}