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July 31, 2019 01:39
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three column cov to windows
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| tail cov.tsv -n1 | cut -f1,2 > spp.genome | |
| bedtools makewindows -g spp.genome -w 1000 > spp_1kw.bed | |
| awk -v OFS='\t' '{print $1,($2 -1),$2,$3 }' cov.tsv > cov.bed | |
| bedtools map -a spp_1kw.bed -b cov.bed -c 4 -o mean |
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