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Nicer function to plot Pearson scores using Pandas and seaborn. Updated in 2022 for better aesthetics.
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def daves_pearson(corr, threashold = False, empty_dimensions = True, title = False): | |
""" | |
Based on http://seaborn.pydata.org/examples/many_pairwise_correlations.html | |
Parameters | |
----------------------- | |
corr : Pandas Pearson coorelation matrix object | |
threashold : Threashold filter for absolute score value. Useful to suppress display of | |
non-correlated values. | |
empty_dimensions : Removes features that don't meet threashold. | |
title : Plot title. | |
""" | |
if threashold: | |
corr = corr[corr.abs() >= threashold] | |
if not empty_dimensions: | |
# drop dimensions with nothing in them after threashold filter | |
# and after removing matrix identity | |
np.fill_diagonal(corr.values, np.NAN) | |
corr = corr.dropna(how = "all", axis = 0) # columns | |
corr = corr.dropna(how = "all", axis = 1) # rows | |
# Generate a mask for the upper triangle | |
mask = np.zeros_like(corr, dtype=bool) | |
mask[np.triu_indices_from(mask)] = True | |
# Set up the matplotlib figure | |
f, ax = plt.subplots(figsize=(11, 9)) | |
# Generate a custom diverging colormap | |
cmap = sns.color_palette("vlag", as_cmap=True) | |
# Draw the heatmap with the mask and correct aspect ratio | |
sns.heatmap(corr, mask=mask, vmax=.3, annot=True, cmap = cmap, | |
square = True, | |
linewidths = 1, linecolor='lightgrey', cbar_kws={"shrink": .5}, ax=ax) | |
ax.axhline(y=0, color='k',linewidth=1) | |
ax.axhline(y=corr.shape[1], color = 'k',linewidth=3) | |
ax.axvline(x=0, color='k',linewidth = 1) | |
ax.axvline(x=corr.shape[0], color = 'k',linewidth=3) | |
if title: | |
ax.set_title(title) | |
plt.xticks(rotation=45) | |
plt.yticks(rotation=0) | |
daves_pearson(corr_all, threashold = .2, empty_dimensions = False, title = "Test") |
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You can add the cmap back in if you like.