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dyf/nrrd_uncompressed.py

Created August 24, 2017 02:41
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save nrrd uncompressed
Raw
nrrd_uncompressed.py
from allensdk.core.mouse_connectivity_cache import MouseConnectivityCache
import nrrd
mcc = MouseConnectivityCache(manifest_file="/data/dynamic-brain-workshop/mouse_connectivity_cache/mouse_connectivity_manifest.json")
exps = mcc.get_experiments()
pd, _ = mcc.get_projection_density(exps[0]['id'])
nrrd.write('some_file.nrrd', pd, options={ 'encoding': 'raw' })
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