Makefile for mpibzip2: How to compile on cluster machine running Cent OS 6

mpibzip2_makefile

#### Parallel MPI BZIP2
## See man doc at http://compression.ca/mpibzip2/
### for .tar or tar.bz2 files,
## mpirun -np 4 mpibzip2 myfile.tar or  mpirun -np 4 mpibzip2 myfile.tar.bz2
### for tar.gz files, see pigz at http://serverfault.com/a/270825/149084
## pigz -dk -p 4 target.tar.gz | tar -xf
# remove -k to delete original file after decompression.

# Make file for MPI BZIP2
SHELL=/bin/sh

# Compiler to use
# You may need to change CC to something like CC=mpiCC
## For nautilus HPC, first do:
## module load zlib and openmpi
## extract mpibzip2 and cd mpibzip2-0.6
## install libbzip2: see README of mpibzip2 on how to compile bzip2-1.0.6, and put two compiled files, libbz2.a and bzlib.h in mpibzip2 directory.
## module show openmpi and get path to libmpi.so file as well as lib64 and include directory. Symlink libmpi.so to mpibzip2-0.6 base directory.
## ln -s /usr/mpi/gcc/openmpi-1.8.4/lib64/libmpi.so ./
## Use either standard make command or static version install below.

## IMPORTANT: change compiler to mpic++
CC=mpic++

# Where you want mpibzip2 installed when you do 'make install'
PREFIX=/usr

all: mpibzip2

# Standard mpibzip2 compile
mpibzip2: mpibzip2.cpp
	$(CC) -O2 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -o mpibzip2 mpibzip2.cpp -lbz2 -lmpi -lpthread

## Choose this if you want to compile in a static version of the libbz2 library
## change -L and -I flags to corresponding openmpi lib64 and include directory paths and remove -lmpi. Also, use additonal -L. flag to source local directory for copied libbz2.a and bzlib.h files from libbzip2 compiled library.
## now run make mpibzip2-static and mpibzip2 should be compiled.
mpibzip2-static: libbz2.a mpibzip2.cpp
	$(CC) -O2 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -o mpibzip2 mpibzip2.cpp -L/usr/mpi/gcc/openmpi-1.8.4/lib64 -lpthread -I/usr/mpi/gcc/openmpi-1.8.4/include -L. -lbz2

## Original command:
# mpibzip2-static: libbz2.a mpibzip2.cpp
# 	$(CC) -O2 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -o mpibzip2 mpibzip2.cpp -lmpi -lpthread -I. -L. -lbz2

# Compatability mode for 32bit file sizes (less than 2GB) and systems
# that have compilers that treat int as 64bit natively
mpibzip2-compat: mpibzip2.cpp
	$(CC) -O2 -o mpibzip2 mpibzip2.cpp -lbz2 -lmpi -lpthread

# Compile for Sun/Solaris MPI
sun: mpibzip2.cpp
	mpCC -O3 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -o mpibzip2 mpibzip2.cpp -pthread -lpthread -lmpi_mt -lbz2

# Install the binary pbzip2 program and man page
install: mpibzip2
	if ( test ! -d $(PREFIX)/bin ) ; then mkdir -p $(PREFIX)/bin ; fi
	if ( test ! -d $(PREFIX)/man ) ; then mkdir -p $(PREFIX)/man ; fi
	if ( test ! -d $(PREFIX)/man/man1 ) ; then mkdir -p $(PREFIX)/man/man1 ; fi
	cp -f mpibzip2 $(PREFIX)/bin/mpibzip2
	chmod a+x $(PREFIX)/bin/mpibzip2
	cp -f mpibzip2.1 $(PREFIX)/man/man1
	chmod a+r $(PREFIX)/man/man1/mpibzip2.1

clean:
	rm mpibzip2