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Samir B. Amin dyndna

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### Define intronic, exonic and intergenic regions
```{r}
library(AnnotationHub)
library(dplyr) ## for %>%
ah = AnnotationHub()
possibleDates(ah)
AnnotationHub::query(ah, c("gtf", "Homo_sapiens", "GRCh37"))
GRCh37.gtf<- ah[['AH10684']]
@rasmusab
rasmusab / tensorflow_in_r_using_rpython.R
Last active April 25, 2018 02:35
An example of building a TensorFlow model from R using rPython
### An example of building a TensorFlow model from R using rPython ###
# For this script you need to
# 1. Have python 2.7 installed.
# 2. Install the rPython package in R.
# 3. Install Google's TensorFlow library as per these instructions:
# http://www.tensorflow.org/get_started/os_setup.md#binary_installation
### Here is how to setup and run a trivial TensorFlow model ###
# Load TensorFlow (I couldn't get this to work without setting sys.argv... )
@burnash
burnash / get_oauth2_token.py
Last active August 11, 2021 21:16
Simple command line script to fetch a Google API's access token.
'''
This script will attempt to open your webbrowser,
perform OAuth 2 authentication and print your access token.
It depends on two libraries: oauth2client and gflags.
To install dependencies from PyPI:
$ pip install python-gflags oauth2client
@cosimo
cosimo / parse-options.sh
Created September 21, 2012 09:31
Example of how to parse options with bash/getopt
#!/bin/bash
#
# Example of how to parse short/long options with 'getopt'
#
OPTS=`getopt -o vhns: --long verbose,dry-run,help,stack-size: -n 'parse-options' -- "$@"`
if [ $? != 0 ] ; then echo "Failed parsing options." >&2 ; exit 1 ; fi
echo "$OPTS"