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Samir B. Amin dyndna

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dyndna / tensorflow_in_r_using_rpython.R
Created March 24, 2016 20:28 — forked from rasmusab/tensorflow_in_r_using_rpython.R
An example of building a TensorFlow model from R using rPython
### An example of building a TensorFlow model from R using rPython ###
# For this script you need to
# 1. Have python 2.7 installed.
# 2. Install the rPython package in R.
# 3. Install Google's TensorFlow library as per these instructions:
# http://www.tensorflow.org/get_started/os_setup.md#binary_installation
### Here is how to setup and run a trivial TensorFlow model ###
# Load TensorFlow (I couldn't get this to work without setting sys.argv... )
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dyndna / keybase.md
Created February 22, 2016 23:10

Keybase proof

I hereby claim:

  • I am dyndna on github.
  • I am sbamin (https://keybase.io/sbamin) on keybase.
  • I have a public key whose fingerprint is FC90 E95D 5E01 4D54 26FF 1163 13B4 0CB3 1EAE A07B

To claim this, I am signing this object:

@dyndna
dyndna / diskstats.sh
Last active December 9, 2015 17:19
disk usage summary per user
#!/bin/bash
# Find disk usage per base directory, per user
# http://unix.stackexchange.com/a/77509/28675
# http://stackoverflow.com/a/32533111/1243763
BASEDIR="$1"
MYTIME="$(date +%d%b%y_%H%M%S%Z)"
if [ -z "$BASEDIR" ] || [ ! -d "$BASEDIR" ]; then
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dyndna / bed_to_gtf_pcawg14_gtf.md
Created May 21, 2015 19:05
bed to gtf conversion for PCAWG14 extended set of annotations

bed to gtf conversion for syn3606092 file, rnaseq.gc19_extNc.bed was done as follows:

Ref.: http://onetipperday.blogspot.com/2012/08/convert-bed-to-gtf.html

#wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToGenePred
#wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToGtf
<workdir>/scripts/bedToGenePred rnaseq.gc19_extNc.bed rnaseq.gc19_extNc.btgp.genepred
<workdir>/scripts/genePredToGtf file rnaseq.gc19_extNc.btgp.genepred rnaseq.gc19_extNc.gptg.gtf
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dyndna / disable_bluetooth_ubuntu_1404.md
Created April 27, 2015 21:08
Disable bluetooth at startup in Ubuntu 14.04: From http://catlingmindswipe.blogspot.com/2012/05/how-to-disable-bluetooth-on-startup.html 
sudo cp /etc/bluetooth/main.conf /etc/bluetooth/main.conf.OLD
sudo nano /etc/bluetooth/main.conf

#Search for the entry:
InitiallyPowered = true

#and change the value to:
InitiallyPowered = false
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dyndna / docker_fix_centos.md
Created April 7, 2015 01:05
[Solved] docker does not run on cent os 6.6

Issue:

Upon sudo service docker start, docker daemon fails to start with tail /var/log/docker showing following error:

time="2015-04-07T00:28:43Z" level="info" msg="+job serveapi(unix:///var/run/docker.sock)" 
time="2015-04-07T00:28:43Z" level="info" msg="WARNING: You are running linux kernel version 2.6.32-504.12.2.el6.x86_64, which might be unstable running docker. Please upgrade your kernel to 3.8.0." 
time="2015-04-07T00:28:43Z" level="info" msg="Listening for HTTP on unix (/var/run/docker.sock)" 
time="2015-04-07T00:28:45Z" level="fatal" msg="Error loading device metadata file .tmp529617825"