Created
March 14, 2019 19:26
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(partial) EasyBuild log for failed build of /tmp/eb-ypvdUu/files_pr7890/s/SRPRISM/SRPRISM-3.0.0-foss-2018b.eb (PR #7890)
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| os.environ["_ModuleTable_Sz_"] = "9"; | |
| ; stderr: | |
| == 2019-03-14 13:57:27,710 modules.py:1204 DEBUG Output found in stdout, seems like '/opt/easybuild/lmod/lmod/libexec/lmod python load NGS/2.9.3-Java-1.8' ran fine | |
| == 2019-03-14 13:57:27,712 modules.py:769 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64', '/opt/easybuild/software/Core/Java/1.8.0_181/lib'] to ['/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64', '/opt/easybuild/software/Core/Java/1.8.0_181/lib', '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib', '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib', '/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib', '/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/hwloc/1.11.10/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/numactl/2.0.11/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/zlib/1.2.11/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/binutils/2.30/lib', '/opt/easybuild/software/Core/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0', '/opt/easybuild/software/Core/GCCcore/7.3.0/lib64', '/opt/easybuild/software/Core/GCCcore/7.3.0/lib'] | |
| == 2019-03-14 13:57:27,712 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64:/opt/easybuild/software/Core/Java/1.8.0_181/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/hwloc/1.11.10/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/zlib/1.2.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/binutils/2.30/lib:/opt/easybuild/software/Core/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/opt/easybuild/software/Core/GCCcore/7.3.0/lib64:/opt/easybuild/software/Core/GCCcore/7.3.0/lib (previous value: '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64:/opt/easybuild/software/Core/Java/1.8.0_181/lib') | |
| == 2019-03-14 13:57:27,712 modules.py:769 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2019-03-14 13:57:27,712 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-03-14 13:57:27,713 modules.py:715 DEBUG Current MODULEPATH: /opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all | |
| == 2019-03-14 13:57:27,714 modules.py:722 DEBUG Changing LD_LIBRARY_PATH from '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64:/opt/easybuild/software/Core/Java/1.8.0_181/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/hwloc/1.11.10/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/zlib/1.2.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/binutils/2.30/lib:/opt/easybuild/software/Core/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/opt/easybuild/software/Core/GCCcore/7.3.0/lib64:/opt/easybuild/software/Core/GCCcore/7.3.0/lib' to '' in environment for module command | |
| == 2019-03-14 13:57:27,714 modules.py:722 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2019-03-14 13:57:27,714 modules.py:726 DEBUG Running module command '/opt/easybuild/lmod/lmod/libexec/lmod python show foss/2018b' from /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0 | |
| == 2019-03-14 13:57:28,235 modules.py:732 DEBUG Output of module command '/opt/easybuild/lmod/lmod/libexec/lmod python show foss/2018b': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:1\;/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:1\;/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:1\;/opt/easybuild/modules/all/Core:1\;/opt/easybuild/modules/all:1"; | |
| os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "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"; | |
| os.environ["_ModuleTable004_"] = "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"; | |
| os.environ["_ModuleTable005_"] = "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"; | |
| os.environ["_ModuleTable006_"] = "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"; | |
| os.environ["_ModuleTable007_"] = "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"; | |
| os.environ["_ModuleTable008_"] = "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"; | |
| os.environ["_ModuleTable009_"] = "IiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDLzcuMy4wLTIuMzAiLCIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZSIsIi9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "9"; | |
| ; stderr: ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /opt/easybuild/modules/all/Core/foss/2018b.lua: | |
| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| help([[ | |
| Description | |
| =========== | |
| GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
| More information | |
| ================ | |
| - Homepage: (none) | |
| ]]) | |
| whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
| whatis("Homepage: (none)") | |
| conflict("foss") | |
| setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018b") | |
| setenv("EBVERSIONFOSS","2018b") | |
| setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018b/easybuild/Core-foss-2018b-easybuild-devel") | |
| == 2019-03-14 13:57:28,236 modules.py:628 DEBUG Cached result for 'module show foss/2018b' with key '('MODULEPATH=/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all', 'lmod', 'foss/2018b')': os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:1\;/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:1\;/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:1\;/opt/easybuild/modules/all/Core:1\;/opt/easybuild/modules/all:1"; | |
| os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "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"; | |
| os.environ["_ModuleTable004_"] = "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"; | |
| os.environ["_ModuleTable005_"] = "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"; | |
| os.environ["_ModuleTable006_"] = "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"; | |
| os.environ["_ModuleTable007_"] = "ZXIiXT0xMixwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJmb3NzLzIwMThiIix9LGh3bG9jPXtbImZuIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvbXBpbGVyL0dDQ2NvcmUvNy4zLjAvaHdsb2MvMS4xMS4xMC5sdWEiLFsiZnVsbE5hbWUiXT0iaHdsb2MvMS4xMS4xMCIsWyJsb2FkT3JkZXIiXT03LHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTIsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09Imh3bG9jLzEuMTEuMTAiLH0sbnVtYWN0bD17WyJmbiJdPSIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wL251bWFjdGwvMi4wLjExLmx1YSIsWyJmdWxsTmFt"; | |
| os.environ["_ModuleTable008_"] = "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"; | |
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| os.environ["_ModuleTable_Sz_"] = "9"; | |
| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /opt/easybuild/modules/all/Core/foss/2018b.lua: | |
| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| help([[ | |
| Description | |
| =========== | |
| GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
| More information | |
| ================ | |
| - Homepage: (none) | |
| ]]) | |
| whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
| whatis("Homepage: (none)") | |
| conflict("foss") | |
| setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018b") | |
| setenv("EBVERSIONFOSS","2018b") | |
| setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018b/easybuild/Core-foss-2018b-easybuild-devel") | |
| == 2019-03-14 13:57:28,237 modules.py:562 DEBUG Result for existence check of foss/2018b module: True | |
| == 2019-03-14 13:57:28,237 modules.py:624 DEBUG Found cached result for 'module show foss/2018b' with key '('MODULEPATH=/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all', 'lmod', 'foss/2018b')': os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:1\;/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:1\;/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:1\;/opt/easybuild/modules/all/Core:1\;/opt/easybuild/modules/all:1"; | |
| os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all"; | |
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| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "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"; | |
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| os.environ["_ModuleTable005_"] = "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"; | |
| os.environ["_ModuleTable006_"] = "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"; | |
| os.environ["_ModuleTable007_"] = "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"; | |
| os.environ["_ModuleTable008_"] = "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"; | |
| os.environ["_ModuleTable009_"] = "IiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDLzcuMy4wLTIuMzAiLCIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZSIsIi9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "9"; | |
| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /opt/easybuild/modules/all/Core/foss/2018b.lua: | |
| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| help([[ | |
| Description | |
| =========== | |
| GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
| More information | |
| ================ | |
| - Homepage: (none) | |
| ]]) | |
| whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
| whatis("Homepage: (none)") | |
| conflict("foss") | |
| setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018b") | |
| setenv("EBVERSIONFOSS","2018b") | |
| setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018b/easybuild/Core-foss-2018b-easybuild-devel") | |
| == 2019-03-14 13:57:28,238 toolchain.py:627 DEBUG List of toolchain dependencies from toolchain module: ['GCC/7.3.0-2.30', 'OpenMPI/3.1.1', 'OpenBLAS/0.3.1', 'FFTW/3.3.8', 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1'] | |
| == 2019-03-14 13:57:28,239 toolchain.py:445 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2018b', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'foss', 'full_mod_name': 'Core/foss/2018b', 'hidden': False, 'parsed': True, 'short_mod_name': 'foss/2018b'}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']} | |
| == 2019-03-14 13:57:28,239 toolchain.py:303 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment | |
| == 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2019-03-14 13:57:28,241 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2019-03-14 13:57:28,241 toolchain.py:637 DEBUG Removing BLACS from list of optional toolchain elements. | |
| == 2019-03-14 13:57:28,241 toolchain.py:640 DEBUG List of toolchain elements from toolchain definition: set(['GCC', 'FFTW', 'OpenMPI', 'ScaLAPACK', 'OpenBLAS']) | |
| == 2019-03-14 13:57:28,241 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: True | |
| == 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False | |
| == 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False | |
| == 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False | |
| == 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False | |
| == 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: True | |
| == 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
| == 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: True | |
| == 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
| == 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
| == 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
| == 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2019-03-14 13:57:28,246 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2019-03-14 13:57:28,246 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2019-03-14 13:57:28,246 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: True | |
| == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False | |
| == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False | |
| == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: True | |
| == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False | |
| == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False | |
| == 2019-03-14 13:57:28,248 toolchain.py:643 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2019-03-14 13:57:28,249 options.py:90 WARNING option: option with name _opt_CC returns None | |
| == 2019-03-14 13:57:28,249 options.py:90 WARNING option: option with name _opt_CXX returns None | |
| == 2019-03-14 13:57:28,250 options.py:90 WARNING option: option with name _opt_F77 returns None | |
| == 2019-03-14 13:57:28,250 options.py:90 WARNING option: option with name _opt_F90 returns None | |
| == 2019-03-14 13:57:28,250 options.py:90 WARNING option: option with name _opt_FC returns None | |
| == 2019-03-14 13:57:28,261 compiler.py:346 INFO _set_optimal_architecture: using march=native as optarch for x86_64. | |
| == 2019-03-14 13:57:28,264 toolchain.py:303 DEBUG get_software_version software version 3.1.1 for OpenMPI was found in environment | |
| == 2019-03-14 13:57:28,266 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1 for OpenMPI was found in environment | |
| == 2019-03-14 13:57:28,298 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1 for OpenBLAS was found in environment | |
| == 2019-03-14 13:57:28,299 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1 for OpenBLAS was found in environment | |
| == 2019-03-14 13:57:28,299 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib64 was not found | |
| == 2019-03-14 13:57:28,303 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1 for OpenBLAS was found in environment | |
| == 2019-03-14 13:57:28,304 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib64 was not found | |
| == 2019-03-14 13:57:28,304 toolchain.py:303 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment | |
| == 2019-03-14 13:57:28,307 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1 for ScaLAPACK was found in environment | |
| == 2019-03-14 13:57:28,365 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1 for ScaLAPACK was found in environment | |
| == 2019-03-14 13:57:28,365 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib64 was not found | |
| == 2019-03-14 13:57:28,366 toolchain.py:303 DEBUG get_software_version software version 3.3.8 for FFTW was found in environment | |
| == 2019-03-14 13:57:28,367 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8 for FFTW was found in environment | |
| == 2019-03-14 13:57:28,387 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8 for FFTW was found in environment | |
| == 2019-03-14 13:57:28,388 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib64 was not found | |
| == 2019-03-14 13:57:28,389 toolchain.py:735 DEBUG prepare: set additional variables onlymod=False | |
| == 2019-03-14 13:57:28,389 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8 for NGS was found in environment | |
| == 2019-03-14 13:57:28,408 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib was not found | |
| == 2019-03-14 13:57:28,412 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include | |
| == 2019-03-14 13:57:28,412 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,412 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,412 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include | |
| == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,413 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib | |
| == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,413 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a | |
| == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,414 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a | |
| == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,414 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib | |
| == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,414 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libopenblas.a,libgfortran.a | |
| == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,415 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libopenblas.a,libgfortran.a | |
| == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,415 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CC to gcc | |
| == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2019-03-14 13:57:28,415 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,416 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/include | |
| == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable CPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/include (previously undefined) | |
| == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/include (previously undefined) | |
| == 2019-03-14 13:57:28,416 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CXX to g++ | |
| == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2019-03-14 13:57:28,417 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,417 toolchain.py:954 DEBUG _setenv_variables: setting environment variable F77 to gfortran | |
| == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,417 toolchain.py:954 DEBUG _setenv_variables: setting environment variable F90 to gfortran | |
| == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,418 toolchain.py:954 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,418 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FC to gfortran | |
| == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,419 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,419 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,419 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include | |
| == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined) | |
| == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined) | |
| == 2019-03-14 13:57:28,420 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib | |
| == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined) | |
| == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined) | |
| == 2019-03-14 13:57:28,420 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3.a | |
| == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2019-03-14 13:57:28,420 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to -fftw3 -pthread | |
| == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) | |
| == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) | |
| == 2019-03-14 13:57:28,421 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include | |
| == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable FFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined) | |
| == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined) | |
| == 2019-03-14 13:57:28,421 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib | |
| == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined) | |
| == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined) | |
| == 2019-03-14 13:57:28,422 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a | |
| == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2019-03-14 13:57:28,422 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3.a,libpthread.a | |
| == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2019-03-14 13:57:28,422 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran | |
| == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,423 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include | |
| == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,423 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib | |
| == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,423 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a | |
| == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,424 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a | |
| == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,424 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib64 -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib -L/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64 | |
| == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable LDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib64 -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib -L/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64 (previously undefined) | |
| == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib64 -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib -L/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64 (previously undefined) | |
| == 2019-03-14 13:57:28,425 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran | |
| == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,425 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran | |
| == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,425 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3 | |
| == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) | |
| == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) | |
| == 2019-03-14 13:57:28,426 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3 -lpthread | |
| == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2019-03-14 13:57:28,426 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran | |
| == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,426 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran | |
| == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,427 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran | |
| == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,427 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran | |
| == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,428 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread | |
| == 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2019-03-14 13:57:28,428 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran | |
| == 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,428 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran | |
| == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,429 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran | |
| == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,429 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran | |
| == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2019-03-14 13:57:28,430 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPICC to mpicc | |
| == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2019-03-14 13:57:28,430 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx | |
| == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2019-03-14 13:57:28,430 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort | |
| == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2019-03-14 13:57:28,431 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort | |
| == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2019-03-14 13:57:28,431 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort | |
| == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2019-03-14 13:57:28,431 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/include | |
| == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable MPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,432 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib | |
| == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,432 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib/libmpi.so | |
| == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib/libmpi.so (previously undefined) | |
| == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib/libmpi.so (previously undefined) | |
| == 2019-03-14 13:57:28,433 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to | |
| == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2019-03-14 13:57:28,433 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc | |
| == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2019-03-14 13:57:28,433 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++ | |
| == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2019-03-14 13:57:28,434 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran | |
| == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,434 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran | |
| == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,435 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran | |
| == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2019-03-14 13:57:28,435 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native | |
| == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2019-03-14 13:57:28,435 toolchain.py:954 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno | |
| == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2019-03-14 13:57:28,436 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include | |
| == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include (previously undefined) | |
| == 2019-03-14 13:57:28,436 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib | |
| == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib (previously undefined) | |
| == 2019-03-14 13:57:28,436 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a | |
| == 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2019-03-14 13:57:28,437 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a | |
| == 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2019-03-14 13:57:28,437 toolchain.py:303 DEBUG get_software_version software version 3.1.1 for OpenMPI was found in environment | |
| == 2019-03-14 13:57:28,438 easyblock.py:1465 INFO Using /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/ as start dir | |
| == 2019-03-14 13:57:28,438 easyblock.py:1468 DEBUG Changed to real build directory /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/ (start_dir) | |
| == 2019-03-14 13:57:28,438 easyblock.py:2608 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2019-03-14 13:57:28,438 build_log.py:252 INFO configuring... | |
| == 2019-03-14 13:57:28,438 easyblock.py:2616 INFO Starting configure step | |
| == 2019-03-14 13:57:28,438 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650> | |
| == 2019-03-14 13:57:28,438 templates.py:183 DEBUG version found in easyconfig is 3.0.0 | |
| == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: github_account, config: %(namelower)s | |
| == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: name, config: SRPRISM | |
| == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: version, config: 3.0.0 | |
| == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: versionsuffix, config: | |
| == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: versionprefix, config: | |
| == 2019-03-14 13:57:28,439 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650> | |
| == 2019-03-14 13:57:28,440 templates.py:183 DEBUG version found in easyconfig is 3.0.0 | |
| == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: github_account, config: %(namelower)s | |
| == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: name, config: SRPRISM | |
| == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: version, config: 3.0.0 | |
| == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: versionsuffix, config: | |
| == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: versionprefix, config: | |
| == 2019-03-14 13:57:28,440 easyblock.py:2622 INFO Running method configure_step part of step configure | |
| == 2019-03-14 13:57:28,441 easyblock.py:2608 DEBUG Not skipping build step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2019-03-14 13:57:28,441 build_log.py:252 INFO building... | |
| == 2019-03-14 13:57:28,441 easyblock.py:2616 INFO Starting build step | |
| == 2019-03-14 13:57:28,441 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650> | |
| == 2019-03-14 13:57:28,441 templates.py:183 DEBUG version found in easyconfig is 3.0.0 | |
| == 2019-03-14 13:57:28,441 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2019-03-14 13:57:28,441 templates.py:227 DEBUG name: github_account, config: %(namelower)s | |
| == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: name, config: SRPRISM | |
| == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: version, config: 3.0.0 | |
| == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: versionsuffix, config: | |
| == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: versionprefix, config: | |
| == 2019-03-14 13:57:28,442 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650> | |
| == 2019-03-14 13:57:28,442 templates.py:183 DEBUG version found in easyconfig is 3.0.0 | |
| == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: github_account, config: %(namelower)s | |
| == 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: name, config: SRPRISM | |
| == 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: version, config: 3.0.0 | |
| == 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: versionsuffix, config: | |
| == 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: versionprefix, config: | |
| == 2019-03-14 13:57:28,443 easyblock.py:2622 INFO Running method build_step part of step build | |
| == 2019-03-14 13:57:28,443 run.py:135 DEBUG run_cmd: Output of "cd srprism/lib && make -j 24 && cd ../app && make" will be logged to /tmp/eb-ypvdUu/easybuild-run_cmd-nf4a1s.log | |
| == 2019-03-14 13:57:28,444 run.py:173 DEBUG run_cmd: running cmd cd srprism/lib && make -j 24 && cd ../app && make (in /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0) | |
| == 2019-03-14 13:57:28,444 run.py:192 INFO running cmd: cd srprism/lib && make -j 24 && cd ../app && make | |
| == 2019-03-14 13:58:02,166 build_log.py:163 ERROR EasyBuild crashed with an error (at easybuild/EB-develop/vsc-base/lib/vsc/utils/exceptions.py:124 in __init__): cmd "cd srprism/lib && make -j 24 && cd ../app && make" exited with exit code 2 and output: | |
| for i in common seq srprism ; do make -C $i ; done | |
| make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/common' | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o binfile.o binfile.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o bzipfile.o bzipfile.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o file.o file.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o text_formatter.o text_formatter.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o textfile.o textfile.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o tmpstore.o tmpstore.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o trace.o trace.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o util.o util.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o zipfile.o zipfile.cpp | |
| In file included from bzipfile.cpp:38:0: | |
| ../common/bzipfile.hpp:39:10: fatal error: bzlib.h: No such file or directory | |
| #include <bzlib.h> | |
| ^~~~~~~~~ | |
| compilation terminated. | |
| Makefile:36: recipe for target 'bzipfile.o' failed | |
| make[1]: *** [bzipfile.o] Error 1 | |
| make[1]: *** Waiting for unfinished jobs.... | |
| In file included from textfile.cpp:42:0: | |
| bzipfile.hpp:39:10: fatal error: bzlib.h: No such file or directory | |
| #include <bzlib.h> | |
| ^~~~~~~~~ | |
| compilation terminated. | |
| Makefile:36: recipe for target 'textfile.o' failed | |
| make[1]: *** [textfile.o] Error 1 | |
| make[1]: Leaving directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/common' | |
| make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/seq' | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o cfasta_stream.o cfasta_stream.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o cfastq_stream.o cfastq_stream.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o fasta_stream.o fasta_stream.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o fastq_stream.o fastq_stream.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqdef.o seqdef.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_factory.o seqinput_factory.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_multistream.o seqinput_multistream.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_sam.o seqinput_sam.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_sra.o seqinput_sra.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o stream_factory.o stream_factory.cpp | |
| ar cr libseq.a cfasta_stream.o cfastq_stream.o fasta_stream.o fastq_stream.o seqdef.o seqinput_factory.o seqinput_multistream.o seqinput_sam.o seqinput_sra.o stream_factory.o ; | |
| ranlib libseq.a | |
| make[1]: Leaving directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/seq' | |
| make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/srprism' | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o align.o align.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o batch.o batch.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o idx_reader.o idx_reader.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o idxmap_reader.o idxmap_reader.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o index_iterator.o index_iterator.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o memmgr.o memmgr.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o mkidx.o mkidx.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o mkidx_pass.o mkidx_pass.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o nmer_iterator.o nmer_iterator.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o out_sam.o out_sam.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o out_tabular.o out_tabular.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o query_data.o query_data.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o query_store.o query_store.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o rmap.o rmap.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o search.o search.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o search_pass.o search_pass.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqstore.o seqstore.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqstore_factory.o seqstore_factory.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o sidmap.o sidmap.cpp | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o tmpres_mgr.o tmpres_mgr.cpp | |
| ar cr libsrprism.a align.o batch.o idx_reader.o idxmap_reader.o index_iterator.o memmgr.o mkidx.o mkidx_pass.o nmer_iterator.o out_sam.o out_tabular.o query_data.o query_store.o rmap.o search.o search_pass.o seqstore.o seqstore_factory.o sidmap.o tmpres_mgr.o ; | |
| ranlib libsrprism.a | |
| make[1]: Leaving directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/srprism' | |
| g++ -I. -I.. -I../lib -std=c++11 -O3 -Wno-deprecated-declarations -c -o options_parser.o options_parser.cpp | |
| g++ -I. -I.. -I../lib -std=c++11 -O3 -Wno-deprecated-declarations -c -o srprism.o srprism.cpp | |
| g++ -o srprism options_parser.o srprism.o ../lib/srprism/libsrprism.a ../lib/seq/libseq.a ../lib/common/libcommon.a -lm -lpthread -lz -lbz2 | |
| g++: error: ../lib/common/libcommon.a: No such file or directory | |
| Makefile:23: recipe for target 'srprism' failed | |
| make: *** [srprism] Error 1 | |
| (at easybuild/EB-develop/easybuild-framework/easybuild/tools/run.py:501 in parse_cmd_output) | |
| == 2019-03-14 13:58:02,166 easyblock.py:2870 WARNING build failed (first 300 chars): cmd "cd srprism/lib && make -j 24 && cd ../app && make" exited with exit code 2 and output: | |
| for i in common seq srprism ; do make -C $i ; done | |
| make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/common' | |
| g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations - | |
| == 2019-03-14 13:58:02,166 easyblock.py:288 INFO Closing log for application name SRPRISM version 3.0.0 |
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