Created
March 14, 2019 19:26
-
-
Save vanzod/e6f87394cad7eecbccdc27e055e1a9e2 to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /tmp/eb-ypvdUu/files_pr7890/s/SRPRISM/SRPRISM-3.0.0-foss-2018b.eb (PR #7890)
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
os.environ["_ModuleTable_Sz_"] = "9"; | |
; stderr: | |
== 2019-03-14 13:57:27,710 modules.py:1204 DEBUG Output found in stdout, seems like '/opt/easybuild/lmod/lmod/libexec/lmod python load NGS/2.9.3-Java-1.8' ran fine | |
== 2019-03-14 13:57:27,712 modules.py:769 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64', '/opt/easybuild/software/Core/Java/1.8.0_181/lib'] to ['/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64', '/opt/easybuild/software/Core/Java/1.8.0_181/lib', '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib', '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib', '/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib', '/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/hwloc/1.11.10/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/numactl/2.0.11/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/zlib/1.2.11/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/binutils/2.30/lib', '/opt/easybuild/software/Core/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0', '/opt/easybuild/software/Core/GCCcore/7.3.0/lib64', '/opt/easybuild/software/Core/GCCcore/7.3.0/lib'] | |
== 2019-03-14 13:57:27,712 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64:/opt/easybuild/software/Core/Java/1.8.0_181/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/hwloc/1.11.10/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/zlib/1.2.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/binutils/2.30/lib:/opt/easybuild/software/Core/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/opt/easybuild/software/Core/GCCcore/7.3.0/lib64:/opt/easybuild/software/Core/GCCcore/7.3.0/lib (previous value: '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64:/opt/easybuild/software/Core/Java/1.8.0_181/lib') | |
== 2019-03-14 13:57:27,712 modules.py:769 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
== 2019-03-14 13:57:27,712 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
== 2019-03-14 13:57:27,713 modules.py:715 DEBUG Current MODULEPATH: /opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all | |
== 2019-03-14 13:57:27,714 modules.py:722 DEBUG Changing LD_LIBRARY_PATH from '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64:/opt/easybuild/software/Core/Java/1.8.0_181/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/hwloc/1.11.10/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/zlib/1.2.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/binutils/2.30/lib:/opt/easybuild/software/Core/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/opt/easybuild/software/Core/GCCcore/7.3.0/lib64:/opt/easybuild/software/Core/GCCcore/7.3.0/lib' to '' in environment for module command | |
== 2019-03-14 13:57:27,714 modules.py:722 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2019-03-14 13:57:27,714 modules.py:726 DEBUG Running module command '/opt/easybuild/lmod/lmod/libexec/lmod python show foss/2018b' from /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0 | |
== 2019-03-14 13:57:28,235 modules.py:732 DEBUG Output of module command '/opt/easybuild/lmod/lmod/libexec/lmod python show foss/2018b': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:1\;/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:1\;/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:1\;/opt/easybuild/modules/all/Core:1\;/opt/easybuild/modules/all:1"; | |
os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "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"; | |
os.environ["_ModuleTable003_"] = "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"; | |
os.environ["_ModuleTable004_"] = "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"; | |
os.environ["_ModuleTable005_"] = "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"; | |
os.environ["_ModuleTable006_"] = "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"; | |
os.environ["_ModuleTable007_"] = "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"; | |
os.environ["_ModuleTable008_"] = "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"; | |
os.environ["_ModuleTable009_"] = "IiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDLzcuMy4wLTIuMzAiLCIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZSIsIi9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUiLH0="; | |
os.environ["_ModuleTable_Sz_"] = "9"; | |
; stderr: ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
/opt/easybuild/modules/all/Core/foss/2018b.lua: | |
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
help([[ | |
Description | |
=========== | |
GNU Compiler Collection (GCC) based compiler toolchain, including | |
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
More information | |
================ | |
- Homepage: (none) | |
]]) | |
whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
whatis("Homepage: (none)") | |
conflict("foss") | |
setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018b") | |
setenv("EBVERSIONFOSS","2018b") | |
setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018b/easybuild/Core-foss-2018b-easybuild-devel") | |
== 2019-03-14 13:57:28,236 modules.py:628 DEBUG Cached result for 'module show foss/2018b' with key '('MODULEPATH=/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all', 'lmod', 'foss/2018b')': os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:1\;/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:1\;/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:1\;/opt/easybuild/modules/all/Core:1\;/opt/easybuild/modules/all:1"; | |
os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "YSIsWyJmdWxsTmFtZSJdPSJGRlRXLzMuMy44IixbImxvYWRPcmRlciJdPTEwLHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTEsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09IkZGVFcvMy4zLjgiLH0sR0NDPXtbImZuIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUvR0NDLzcuMy4wLTIuMzAubHVhIixbImZ1bGxOYW1lIl09IkdDQy83LjMuMC0yLjMwIixbImxvYWRPcmRlciJdPTQscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iR0NDLzcuMy4wLTIuMzAiLH0sR0NDY29yZT17WyJmbiJdPSIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db3JlL0dDQ2NvcmUvNy4zLjAubHVhIixbImZ1bGxO"; | |
os.environ["_ModuleTable003_"] = "YW1lIl09IkdDQ2NvcmUvNy4zLjAiLFsibG9hZE9yZGVyIl09Mixwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0yLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJHQ0Njb3JlLzcuMy4wIix9LEphdmE9e1siZm4iXT0iL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZS9KYXZhLzEuOC4wXzE4MS5sdWEiLFsiZnVsbE5hbWUiXT0iSmF2YS8xLjguMF8xODEiLFsibG9hZE9yZGVyIl09MTMscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iSmF2YS8xLjguMF8xODEiLH0sTkdTPXtbImZuIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL01QSS9HQ0MvNy4zLjAtMi4zMC9PcGVuTVBJLzMuMS4xL05HUy8y"; | |
os.environ["_ModuleTable004_"] = "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"; | |
os.environ["_ModuleTable005_"] = "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"; | |
os.environ["_ModuleTable006_"] = "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"; | |
os.environ["_ModuleTable007_"] = "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"; | |
os.environ["_ModuleTable008_"] = "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"; | |
os.environ["_ModuleTable009_"] = "IiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDLzcuMy4wLTIuMzAiLCIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZSIsIi9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUiLH0="; | |
os.environ["_ModuleTable_Sz_"] = "9"; | |
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
/opt/easybuild/modules/all/Core/foss/2018b.lua: | |
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
help([[ | |
Description | |
=========== | |
GNU Compiler Collection (GCC) based compiler toolchain, including | |
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
More information | |
================ | |
- Homepage: (none) | |
]]) | |
whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
whatis("Homepage: (none)") | |
conflict("foss") | |
setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018b") | |
setenv("EBVERSIONFOSS","2018b") | |
setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018b/easybuild/Core-foss-2018b-easybuild-devel") | |
== 2019-03-14 13:57:28,237 modules.py:562 DEBUG Result for existence check of foss/2018b module: True | |
== 2019-03-14 13:57:28,237 modules.py:624 DEBUG Found cached result for 'module show foss/2018b' with key '('MODULEPATH=/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all', 'lmod', 'foss/2018b')': os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:1\;/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:1\;/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:1\;/opt/easybuild/modules/all/Core:1\;/opt/easybuild/modules/all:1"; | |
os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "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"; | |
os.environ["_ModuleTable003_"] = "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"; | |
os.environ["_ModuleTable004_"] = "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"; | |
os.environ["_ModuleTable005_"] = "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"; | |
os.environ["_ModuleTable006_"] = "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"; | |
os.environ["_ModuleTable007_"] = "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"; | |
os.environ["_ModuleTable008_"] = "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"; | |
os.environ["_ModuleTable009_"] = "IiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDLzcuMy4wLTIuMzAiLCIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZSIsIi9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUiLH0="; | |
os.environ["_ModuleTable_Sz_"] = "9"; | |
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
/opt/easybuild/modules/all/Core/foss/2018b.lua: | |
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
help([[ | |
Description | |
=========== | |
GNU Compiler Collection (GCC) based compiler toolchain, including | |
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
More information | |
================ | |
- Homepage: (none) | |
]]) | |
whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
whatis("Homepage: (none)") | |
conflict("foss") | |
setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018b") | |
setenv("EBVERSIONFOSS","2018b") | |
setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018b/easybuild/Core-foss-2018b-easybuild-devel") | |
== 2019-03-14 13:57:28,238 toolchain.py:627 DEBUG List of toolchain dependencies from toolchain module: ['GCC/7.3.0-2.30', 'OpenMPI/3.1.1', 'OpenBLAS/0.3.1', 'FFTW/3.3.8', 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1'] | |
== 2019-03-14 13:57:28,239 toolchain.py:445 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2018b', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'foss', 'full_mod_name': 'Core/foss/2018b', 'hidden': False, 'parsed': True, 'short_mod_name': 'foss/2018b'}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']} | |
== 2019-03-14 13:57:28,239 toolchain.py:303 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment | |
== 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
== 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
== 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
== 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
== 2019-03-14 13:57:28,241 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
== 2019-03-14 13:57:28,241 toolchain.py:637 DEBUG Removing BLACS from list of optional toolchain elements. | |
== 2019-03-14 13:57:28,241 toolchain.py:640 DEBUG List of toolchain elements from toolchain definition: set(['GCC', 'FFTW', 'OpenMPI', 'ScaLAPACK', 'OpenBLAS']) | |
== 2019-03-14 13:57:28,241 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: True | |
== 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False | |
== 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False | |
== 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False | |
== 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False | |
== 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
== 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
== 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
== 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: True | |
== 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
== 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
== 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: True | |
== 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
== 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
== 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
== 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
== 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
== 2019-03-14 13:57:28,246 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
== 2019-03-14 13:57:28,246 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
== 2019-03-14 13:57:28,246 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: True | |
== 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False | |
== 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False | |
== 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: True | |
== 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False | |
== 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False | |
== 2019-03-14 13:57:28,248 toolchain.py:643 INFO List of toolchain dependency modules and toolchain definition match! | |
== 2019-03-14 13:57:28,249 options.py:90 WARNING option: option with name _opt_CC returns None | |
== 2019-03-14 13:57:28,249 options.py:90 WARNING option: option with name _opt_CXX returns None | |
== 2019-03-14 13:57:28,250 options.py:90 WARNING option: option with name _opt_F77 returns None | |
== 2019-03-14 13:57:28,250 options.py:90 WARNING option: option with name _opt_F90 returns None | |
== 2019-03-14 13:57:28,250 options.py:90 WARNING option: option with name _opt_FC returns None | |
== 2019-03-14 13:57:28,261 compiler.py:346 INFO _set_optimal_architecture: using march=native as optarch for x86_64. | |
== 2019-03-14 13:57:28,264 toolchain.py:303 DEBUG get_software_version software version 3.1.1 for OpenMPI was found in environment | |
== 2019-03-14 13:57:28,266 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1 for OpenMPI was found in environment | |
== 2019-03-14 13:57:28,298 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1 for OpenBLAS was found in environment | |
== 2019-03-14 13:57:28,299 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1 for OpenBLAS was found in environment | |
== 2019-03-14 13:57:28,299 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib64 was not found | |
== 2019-03-14 13:57:28,303 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1 for OpenBLAS was found in environment | |
== 2019-03-14 13:57:28,304 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib64 was not found | |
== 2019-03-14 13:57:28,304 toolchain.py:303 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment | |
== 2019-03-14 13:57:28,307 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1 for ScaLAPACK was found in environment | |
== 2019-03-14 13:57:28,365 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1 for ScaLAPACK was found in environment | |
== 2019-03-14 13:57:28,365 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib64 was not found | |
== 2019-03-14 13:57:28,366 toolchain.py:303 DEBUG get_software_version software version 3.3.8 for FFTW was found in environment | |
== 2019-03-14 13:57:28,367 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8 for FFTW was found in environment | |
== 2019-03-14 13:57:28,387 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8 for FFTW was found in environment | |
== 2019-03-14 13:57:28,388 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib64 was not found | |
== 2019-03-14 13:57:28,389 toolchain.py:735 DEBUG prepare: set additional variables onlymod=False | |
== 2019-03-14 13:57:28,389 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8 for NGS was found in environment | |
== 2019-03-14 13:57:28,408 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib was not found | |
== 2019-03-14 13:57:28,412 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include | |
== 2019-03-14 13:57:28,412 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
== 2019-03-14 13:57:28,412 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
== 2019-03-14 13:57:28,412 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include | |
== 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
== 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
== 2019-03-14 13:57:28,413 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib | |
== 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,413 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a | |
== 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,414 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a | |
== 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,414 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib | |
== 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,414 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libopenblas.a,libgfortran.a | |
== 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,415 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libopenblas.a,libgfortran.a | |
== 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,415 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CC to gcc | |
== 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable CC set to gcc (previously undefined) | |
== 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
== 2019-03-14 13:57:28,415 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
== 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,416 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/include | |
== 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable CPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/include (previously undefined) | |
== 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/include (previously undefined) | |
== 2019-03-14 13:57:28,416 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CXX to g++ | |
== 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined) | |
== 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
== 2019-03-14 13:57:28,417 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
== 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,417 toolchain.py:954 DEBUG _setenv_variables: setting environment variable F77 to gfortran | |
== 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,417 toolchain.py:954 DEBUG _setenv_variables: setting environment variable F90 to gfortran | |
== 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,418 toolchain.py:954 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
== 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,418 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FC to gfortran | |
== 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,419 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
== 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,419 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
== 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,419 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include | |
== 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined) | |
== 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined) | |
== 2019-03-14 13:57:28,420 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib | |
== 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined) | |
== 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined) | |
== 2019-03-14 13:57:28,420 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3.a | |
== 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
== 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
== 2019-03-14 13:57:28,420 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to -fftw3 -pthread | |
== 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) | |
== 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) | |
== 2019-03-14 13:57:28,421 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include | |
== 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable FFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined) | |
== 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined) | |
== 2019-03-14 13:57:28,421 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib | |
== 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined) | |
== 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined) | |
== 2019-03-14 13:57:28,422 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a | |
== 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
== 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
== 2019-03-14 13:57:28,422 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3.a,libpthread.a | |
== 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
== 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
== 2019-03-14 13:57:28,422 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran | |
== 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,423 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include | |
== 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
== 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined) | |
== 2019-03-14 13:57:28,423 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib | |
== 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,423 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a | |
== 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,424 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a | |
== 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,424 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib64 -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib -L/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64 | |
== 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable LDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib64 -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib -L/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64 (previously undefined) | |
== 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib64 -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib -L/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64 (previously undefined) | |
== 2019-03-14 13:57:28,425 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran | |
== 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,425 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran | |
== 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,425 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3 | |
== 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) | |
== 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) | |
== 2019-03-14 13:57:28,426 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3 -lpthread | |
== 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
== 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
== 2019-03-14 13:57:28,426 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran | |
== 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,426 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran | |
== 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,427 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran | |
== 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,427 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran | |
== 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,428 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread | |
== 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
== 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
== 2019-03-14 13:57:28,428 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran | |
== 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,428 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran | |
== 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,429 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran | |
== 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,429 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran | |
== 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
== 2019-03-14 13:57:28,430 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPICC to mpicc | |
== 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined) | |
== 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
== 2019-03-14 13:57:28,430 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx | |
== 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
== 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
== 2019-03-14 13:57:28,430 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort | |
== 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
== 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
== 2019-03-14 13:57:28,431 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort | |
== 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
== 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
== 2019-03-14 13:57:28,431 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort | |
== 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
== 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
== 2019-03-14 13:57:28,431 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/include | |
== 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable MPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/include (previously undefined) | |
== 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/include (previously undefined) | |
== 2019-03-14 13:57:28,432 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib | |
== 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,432 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib/libmpi.so | |
== 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib/libmpi.so (previously undefined) | |
== 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib/libmpi.so (previously undefined) | |
== 2019-03-14 13:57:28,433 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to | |
== 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
== 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
== 2019-03-14 13:57:28,433 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc | |
== 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
== 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
== 2019-03-14 13:57:28,433 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++ | |
== 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
== 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
== 2019-03-14 13:57:28,434 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran | |
== 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,434 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran | |
== 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,435 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran | |
== 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
== 2019-03-14 13:57:28,435 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native | |
== 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
== 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
== 2019-03-14 13:57:28,435 toolchain.py:954 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno | |
== 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
== 2019-03-14 13:57:28,436 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include | |
== 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include (previously undefined) | |
== 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include (previously undefined) | |
== 2019-03-14 13:57:28,436 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib | |
== 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib (previously undefined) | |
== 2019-03-14 13:57:28,436 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a | |
== 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2019-03-14 13:57:28,437 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a | |
== 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
== 2019-03-14 13:57:28,437 toolchain.py:303 DEBUG get_software_version software version 3.1.1 for OpenMPI was found in environment | |
== 2019-03-14 13:57:28,438 easyblock.py:1465 INFO Using /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/ as start dir | |
== 2019-03-14 13:57:28,438 easyblock.py:1468 DEBUG Changed to real build directory /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/ (start_dir) | |
== 2019-03-14 13:57:28,438 easyblock.py:2608 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
== 2019-03-14 13:57:28,438 build_log.py:252 INFO configuring... | |
== 2019-03-14 13:57:28,438 easyblock.py:2616 INFO Starting configure step | |
== 2019-03-14 13:57:28,438 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650> | |
== 2019-03-14 13:57:28,438 templates.py:183 DEBUG version found in easyconfig is 3.0.0 | |
== 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: github_account, config: %(namelower)s | |
== 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: name, config: SRPRISM | |
== 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: version, config: 3.0.0 | |
== 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: versionsuffix, config: | |
== 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: versionprefix, config: | |
== 2019-03-14 13:57:28,439 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650> | |
== 2019-03-14 13:57:28,440 templates.py:183 DEBUG version found in easyconfig is 3.0.0 | |
== 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: github_account, config: %(namelower)s | |
== 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: name, config: SRPRISM | |
== 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: version, config: 3.0.0 | |
== 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: versionsuffix, config: | |
== 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: versionprefix, config: | |
== 2019-03-14 13:57:28,440 easyblock.py:2622 INFO Running method configure_step part of step configure | |
== 2019-03-14 13:57:28,441 easyblock.py:2608 DEBUG Not skipping build step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
== 2019-03-14 13:57:28,441 build_log.py:252 INFO building... | |
== 2019-03-14 13:57:28,441 easyblock.py:2616 INFO Starting build step | |
== 2019-03-14 13:57:28,441 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650> | |
== 2019-03-14 13:57:28,441 templates.py:183 DEBUG version found in easyconfig is 3.0.0 | |
== 2019-03-14 13:57:28,441 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2019-03-14 13:57:28,441 templates.py:227 DEBUG name: github_account, config: %(namelower)s | |
== 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: name, config: SRPRISM | |
== 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: version, config: 3.0.0 | |
== 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: versionsuffix, config: | |
== 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: versionprefix, config: | |
== 2019-03-14 13:57:28,442 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650> | |
== 2019-03-14 13:57:28,442 templates.py:183 DEBUG version found in easyconfig is 3.0.0 | |
== 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: github_account, config: %(namelower)s | |
== 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: name, config: SRPRISM | |
== 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: version, config: 3.0.0 | |
== 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: versionsuffix, config: | |
== 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: versionprefix, config: | |
== 2019-03-14 13:57:28,443 easyblock.py:2622 INFO Running method build_step part of step build | |
== 2019-03-14 13:57:28,443 run.py:135 DEBUG run_cmd: Output of "cd srprism/lib && make -j 24 && cd ../app && make" will be logged to /tmp/eb-ypvdUu/easybuild-run_cmd-nf4a1s.log | |
== 2019-03-14 13:57:28,444 run.py:173 DEBUG run_cmd: running cmd cd srprism/lib && make -j 24 && cd ../app && make (in /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0) | |
== 2019-03-14 13:57:28,444 run.py:192 INFO running cmd: cd srprism/lib && make -j 24 && cd ../app && make | |
== 2019-03-14 13:58:02,166 build_log.py:163 ERROR EasyBuild crashed with an error (at easybuild/EB-develop/vsc-base/lib/vsc/utils/exceptions.py:124 in __init__): cmd "cd srprism/lib && make -j 24 && cd ../app && make" exited with exit code 2 and output: | |
for i in common seq srprism ; do make -C $i ; done | |
make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/common' | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o binfile.o binfile.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o bzipfile.o bzipfile.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o file.o file.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o text_formatter.o text_formatter.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o textfile.o textfile.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o tmpstore.o tmpstore.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o trace.o trace.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o util.o util.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o zipfile.o zipfile.cpp | |
In file included from bzipfile.cpp:38:0: | |
../common/bzipfile.hpp:39:10: fatal error: bzlib.h: No such file or directory | |
#include <bzlib.h> | |
^~~~~~~~~ | |
compilation terminated. | |
Makefile:36: recipe for target 'bzipfile.o' failed | |
make[1]: *** [bzipfile.o] Error 1 | |
make[1]: *** Waiting for unfinished jobs.... | |
In file included from textfile.cpp:42:0: | |
bzipfile.hpp:39:10: fatal error: bzlib.h: No such file or directory | |
#include <bzlib.h> | |
^~~~~~~~~ | |
compilation terminated. | |
Makefile:36: recipe for target 'textfile.o' failed | |
make[1]: *** [textfile.o] Error 1 | |
make[1]: Leaving directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/common' | |
make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/seq' | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o cfasta_stream.o cfasta_stream.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o cfastq_stream.o cfastq_stream.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o fasta_stream.o fasta_stream.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o fastq_stream.o fastq_stream.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqdef.o seqdef.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_factory.o seqinput_factory.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_multistream.o seqinput_multistream.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_sam.o seqinput_sam.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_sra.o seqinput_sra.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o stream_factory.o stream_factory.cpp | |
ar cr libseq.a cfasta_stream.o cfastq_stream.o fasta_stream.o fastq_stream.o seqdef.o seqinput_factory.o seqinput_multistream.o seqinput_sam.o seqinput_sra.o stream_factory.o ; | |
ranlib libseq.a | |
make[1]: Leaving directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/seq' | |
make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/srprism' | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o align.o align.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o batch.o batch.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o idx_reader.o idx_reader.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o idxmap_reader.o idxmap_reader.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o index_iterator.o index_iterator.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o memmgr.o memmgr.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o mkidx.o mkidx.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o mkidx_pass.o mkidx_pass.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o nmer_iterator.o nmer_iterator.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o out_sam.o out_sam.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o out_tabular.o out_tabular.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o query_data.o query_data.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o query_store.o query_store.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o rmap.o rmap.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o search.o search.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o search_pass.o search_pass.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqstore.o seqstore.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqstore_factory.o seqstore_factory.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o sidmap.o sidmap.cpp | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o tmpres_mgr.o tmpres_mgr.cpp | |
ar cr libsrprism.a align.o batch.o idx_reader.o idxmap_reader.o index_iterator.o memmgr.o mkidx.o mkidx_pass.o nmer_iterator.o out_sam.o out_tabular.o query_data.o query_store.o rmap.o search.o search_pass.o seqstore.o seqstore_factory.o sidmap.o tmpres_mgr.o ; | |
ranlib libsrprism.a | |
make[1]: Leaving directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/srprism' | |
g++ -I. -I.. -I../lib -std=c++11 -O3 -Wno-deprecated-declarations -c -o options_parser.o options_parser.cpp | |
g++ -I. -I.. -I../lib -std=c++11 -O3 -Wno-deprecated-declarations -c -o srprism.o srprism.cpp | |
g++ -o srprism options_parser.o srprism.o ../lib/srprism/libsrprism.a ../lib/seq/libseq.a ../lib/common/libcommon.a -lm -lpthread -lz -lbz2 | |
g++: error: ../lib/common/libcommon.a: No such file or directory | |
Makefile:23: recipe for target 'srprism' failed | |
make: *** [srprism] Error 1 | |
(at easybuild/EB-develop/easybuild-framework/easybuild/tools/run.py:501 in parse_cmd_output) | |
== 2019-03-14 13:58:02,166 easyblock.py:2870 WARNING build failed (first 300 chars): cmd "cd srprism/lib && make -j 24 && cd ../app && make" exited with exit code 2 and output: | |
for i in common seq srprism ; do make -C $i ; done | |
make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/common' | |
g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations - | |
== 2019-03-14 13:58:02,166 easyblock.py:288 INFO Closing log for application name SRPRISM version 3.0.0 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment