Polymorphic sites in the FOXP2 ROI Sanger sequenced in Atkinson et al.

FOXP2_SangerROI.vcf

##fileformat=VCFv4.2
##source_20170921.1=vcf-merge(v0.1.14-12-gcdb80b8) HGDP00213.GRCh37.vcf.gz HGDP00222.GRCh37.vcf.gz HGDP00232.GRCh37.vcf.gz HGDP00237.GRCh37.vcf.gz HGDP00239.GRCh37.vcf.gz HGDP00243.GRCh37.vcf.gz HGDP00247.GRCh37.vcf.gz HGDP00258.GRCh37.vcf.gz HGDP00449.GRCh37.vcf.gz HGDP00456.GRCh37.vcf.gz HGDP00462.GRCh37.vcf.gz HGDP00471.GRCh37.vcf.gz HGDP00474.GRCh37.vcf.gz HGDP00476.GRCh37.vcf.gz HGDP00712.GRCh37.vcf.gz HGDP00713.GRCh37.vcf.gz HGDP00716.GRCh37.vcf.gz HGDP00719.GRCh37.vcf.gz HGDP00720.GRCh37.vcf.gz HGDP00721.GRCh37.vcf.gz HGDP00950.GRCh37.vcf.gz HGDP00955.GRCh37.vcf.gz HGDP00960.GRCh37.vcf.gz HGDP00963.GRCh37.vcf.gz HGDP00964.GRCh37.vcf.gz HGDP00987.GRCh37.vcf.gz HGDP00991.GRCh37.vcf.gz HGDP00992.GRCh37.vcf.gz HGDP01029.GRCh37.vcf.gz HGDP01032.GRCh37.vcf.gz HGDP01036.GRCh37.vcf.gz HGDP01081.GRCh37.vcf.gz HGDP01258.GRCh37.vcf.gz HGDP01259.GRCh37.vcf.gz HGDP01262.GRCh37.vcf.gz HGDP01264.GRCh37.vcf.gz HGDP01267.GRCh37.vcf.gz HGDP01274.GRCh37.vcf.gz HGDP01275.GRCh37.vcf.gz HGDP01277.GRCh37.vcf.gz SA007.GRCh37.vcf.gz SA017.GRCh37.vcf.gz SA036.GRCh37.vcf.gz SA043.GRCh37.vcf.gz SA053.GRCh37.vcf.gz SA055.GRCh37.vcf.gz SA057.GRCh37.vcf.gz
##sourceFiles_20170921.1=0:HGDP00213.GRCh37.vcf.gz,1:HGDP00222.GRCh37.vcf.gz,2:HGDP00232.GRCh37.vcf.gz,3:HGDP00237.GRCh37.vcf.gz,4:HGDP00239.GRCh37.vcf.gz,5:HGDP00243.GRCh37.vcf.gz,6:HGDP00247.GRCh37.vcf.gz,7:HGDP00258.GRCh37.vcf.gz,8:HGDP00449.GRCh37.vcf.gz,9:HGDP00456.GRCh37.vcf.gz,10:HGDP00462.GRCh37.vcf.gz,11:HGDP00471.GRCh37.vcf.gz,12:HGDP00474.GRCh37.vcf.gz,13:HGDP00476.GRCh37.vcf.gz,14:HGDP00712.GRCh37.vcf.gz,15:HGDP00713.GRCh37.vcf.gz,16:HGDP00716.GRCh37.vcf.gz,17:HGDP00719.GRCh37.vcf.gz,18:HGDP00720.GRCh37.vcf.gz,19:HGDP00721.GRCh37.vcf.gz,20:HGDP00950.GRCh37.vcf.gz,21:HGDP00955.GRCh37.vcf.gz,22:HGDP00960.GRCh37.vcf.gz,23:HGDP00963.GRCh37.vcf.gz,24:HGDP00964.GRCh37.vcf.gz,25:HGDP00987.GRCh37.vcf.gz,26:HGDP00991.GRCh37.vcf.gz,27:HGDP00992.GRCh37.vcf.gz,28:HGDP01029.GRCh37.vcf.gz,29:HGDP01032.GRCh37.vcf.gz,30:HGDP01036.GRCh37.vcf.gz,31:HGDP01081.GRCh37.vcf.gz,32:HGDP01258.GRCh37.vcf.gz,33:HGDP01259.GRCh37.vcf.gz,34:HGDP01262.GRCh37.vcf.gz,35:HGDP01264.GRCh37.vcf.gz,36:HGDP01267.GRCh37.vcf.gz,37:HGDP01274.GRCh37.vcf.gz,38:HGDP01275.GRCh37.vcf.gz,39:HGDP01277.GRCh37.vcf.gz,40:SA007.GRCh37.vcf.gz,41:SA017.GRCh37.vcf.gz,42:SA036.GRCh37.vcf.gz,43:SA043.GRCh37.vcf.gz,44:SA053.GRCh37.vcf.gz,45:SA055.GRCh37.vcf.gz,46:SA057.GRCh37.vcf.gz
##INFO=<ID=SF,Number=.,Type=String,Description="Source File (index to sourceFiles, f when filtered)">
##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HGDP00213	HGDP00222	HGDP00232	HGDP00237	HGDP00239	HGDP00243	HGDP00247	HGDP00258	HGDP00449	HGDP00456	HGDP00462	HGDP00471	HGDP00474	HGDP00476	HGDP00712	HGDP00713	HGDP00716	HGDP00719	HGDP00720	HGDP00721	HGDP00950	HGDP00955	HGDP00960	HGDP00963	HGDP00964	HGDP00987	HGDP00991	HGDP00992	HGDP01029	HGDP01032	HGDP01036	HGDP01081	HGDP01258	HGDP01259	HGDP01262	HGDP01264	HGDP01267	HGDP01274	HGDP01275	HGDP01277	SA007	SA017	SA036	SA043	SA053	SA055	SA057
7	114288819	.	C	T	50.00	PASS	AC=1;AN=2;SF=19	GT	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	0/1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
7	114289621	.	G	A	50.00	PASS	AC=7;AN=12;SF=30,40,41,43,44,46	GT	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	1/0	.	.	.	.	.	.	.	.	.	1/0	1/0	.	1/1	1/0	.	1/0
7	114289641	.	T	A	50.00	PASS	AC=8;AN=14;SF=25,30,40,41,43,44,46	GT	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	1/0	.	.	.	.	1/0	.	.	.	.	.	.	.	.	.	1/0	1/0	.	1/1	1/0	.	1/0
7	114289713	.	A	G	50.00	PASS	AC=1;AN=2;SF=13	GT	.	.	.	.	.	.	.	.	.	.	.	.	.	0/1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
7	114289880	.	G	T	50.00	PASS	AC=2;AN=4;SF=29,30	GT	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	0/1	0/1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
7	114289934	.	C	T	50.00	PASS	AC=7;AN=12;SF=30,40,41,43,44,46	GT	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	0/1	.	.	.	.	.	.	.	.	.	0/1	0/1	.	1/1	0/1	.	0/1
7	114290213	.	A	T	50.00	PASS	AC=18;AN=22;SF=7,25,26,29,30,31,40,41,43,44,46	GT	.	.	.	.	.	.	.	0/1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	0/1	0/1	.	.	1/1	1/1	1/1	.	.	.	.	.	.	.	.	1/1	1/1	.	1/1	1/1	.	0/1
7	114290369	.	T	G	50.00	PASS	AC=6;AN=10;SF=30,41,43,44,46	GT	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	1/0	.	.	.	.	.	.	.	.	.	.	1/0	.	1/1	1/0	.	1/0
7	114290415	.	T	C	50.00	PASS	AC=10;AN=20;SF=1,6,28,29,30,31,32,33,37,45	GT	.	1/0	.	.	.	.	1/0	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	1/0	1/0	1/0	1/0	1/0	1/0	.	.	.	1/0	.	.	.	.	.	.	.	1/0	.
7	114290483	.	G	T	50.00	PASS	AC=3;AN=4;SF=29,45	GT	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	1/1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	0/1	.
7	114290491	.	A	C	50.00	PASS	AC=2;AN=2;SF=29	GT	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	1/1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.