Skip to content

Instantly share code, notes, and snippets.

@ebolyen
Last active July 29, 2019 00:41
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save ebolyen/ea43dbb162150cebfd33de7d3a57b1fa to your computer and use it in GitHub Desktop.
Save ebolyen/ea43dbb162150cebfd33de7d3a57b1fa to your computer and use it in GitHub Desktop.
Q2-STAMPS19

We are starting in the middle of an analysis

Let's create a place to work first:

cd ~
mkdir q2-tutorial
cd q2-tutorial

Download data from "collaborators":

wget -O "sample-metadata.tsv" https://data.qiime2.org/2019.4/tutorials/moving-pictures/sample_metadata.tsv
wget -O "stats-dada2.qza" https://docs.qiime2.org/2019.4/data/tutorials/moving-pictures/stats-dada2.qza
wget -O "table.qza" https://docs.qiime2.org/2019.4/data/tutorials/moving-pictures/table-dada2.qza
wget -O "rep-seqs.qza" https://docs.qiime2.org/2019.4/data/tutorials/moving-pictures/rep-seqs-dada2.qza

Explore QIIME 2 command:

qiime

Try:

qiime metadata --help

Now for the rest of the tutorial:

<<CLICK HERE>>

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment