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## RNA-seq analysis with DESeq2 | |
## Stephen Turner, @genetics_blog | |
# RNA-seq data from GSE52202 | |
# http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse52202. All patients with | |
# ALS, 4 with C9 expansion ("exp"), 4 controls without expansion ("ctl") | |
# Import & pre-process ---------------------------------------------------- | |
# Import data from featureCounts |
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import matplotlib.pyplot as plt | |
import pandas as pd | |
import datashader as ds | |
import datashader.transfer_functions as tf | |
from datashader.colors import Hot | |
time_period = 60 |
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package subcommands | |
import ( | |
"fmt" | |
"log" | |
"os" | |
"strings" | |
) | |
type Command interface { |