Ilya Shamovsky eco32i

## issue12-notebook
{
 "metadata": {
  "celltoolbar": "Slideshow",
  "name": "",
  "signature": "sha256:5f9e69771210ecdca97b7558f4bca40716b0ce44d223de8a62651d821cee6065"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {

## gist:7648fcb8e6295a63386a
{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Download run data from `basespace`"
   ]
  },
  {

## test.ipynb

      
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                eco32i
                / test.ipynb
            
            
              Created
              July 16, 2016 17:45
            
              
                nbmerge issue
              
          
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## environment.yml
name: rpoS
channels:
- bioconda
- defaults
dependencies:
- bioconda::bcftools=1.3.1=0
- bioconda::curl=7.45.0=1
- bioconda::htslib=1.3.1=0
- bioconda::libxml2=2.9.3=0
- bioconda::pybedtools=0.7.8=py35_1

## demux.py
#!/usr/bin/env python

import os
import contextlib
import gzip
import argparse

from collections import Counter
from itertools import zip_longest
	{
	"metadata": {
	"celltoolbar": "Slideshow",
	"name": "",
	"signature": "sha256:5f9e69771210ecdca97b7558f4bca40716b0ce44d223de8a62651d821cee6065"
	},
	"nbformat": 3,
	"nbformat_minor": 0,
	"worksheets": [
	{
	{
	"cells": [
	{
	"cell_type": "markdown",
	"metadata": {},
	"source": [
	"## Download run data from `basespace`"
	]
	},
	{
	name: rpoS
	channels:
	- bioconda
	- defaults
	dependencies:
	- bioconda::bcftools=1.3.1=0
	- bioconda::curl=7.45.0=1
	- bioconda::htslib=1.3.1=0
	- bioconda::libxml2=2.9.3=0
	- bioconda::pybedtools=0.7.8=py35_1
	#!/usr/bin/env python

	import os
	import contextlib
	import gzip
	import argparse

	from collections import Counter
	from itertools import zip_longest