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| [ucsd-train25@tscc-login1 ~]$ conda env list | |
| # conda environments: | |
| # | |
| base * /home/ucsd-train25/anaconda2 | |
| deseq2-test /home/ucsd-train25/anaconda2/envs/deseq2-test | |
| dropseqtools /home/ucsd-train25/anaconda2/envs/dropseqtools | |
| py2_env /home/ucsd-train25/anaconda2/envs/py2_env | |
| py3_cshl /home/ucsd-train25/anaconda2/envs/py3_cshl | |
| seurat /home/ucsd-train25/anaconda2/envs/seurat | |
| seurat-test /home/ucsd-train25/anaconda2/envs/seurat-test | |
(R-Seurat) [ucsd-train25@tscc-login1 ~]$ conda install -y -c conda-forge libjpeg-turbo=1.5 zeromq=4.2.5 readline=6.2
Solving environment: done
Package Plan
environment location: /home/ucsd-train25/anaconda2/envs/R-Seurat
added / updated specs:
- libjpeg-turbo=1.5
- readline=6.2
- zeromq=4.2.5
The following packages will be downloaded:
package | build
---------------------------|-----------------
certifi-2018.4.16 | py36_0 142 KB conda-forge
The following NEW packages will be INSTALLED:
libjpeg-turbo: 1.5.90-0 conda-forge
The following packages will be UPDATED:
_r-mutex: 1.0.0-anacondar_1 r --> 1.0.0-mro_2
ca-certificates: 2018.03.07-0 anaconda --> 2018.4.16-0 conda-forge
certifi: 2018.4.16-py36_0 anaconda --> 2018.4.16-py36_0 conda-forge
icu: 54.1-0 --> 58.2-hfc679d8_0 conda-forge
openssl: 1.0.2o-h20670df_0 anaconda --> 1.0.2o-0 conda-forge
r-base: 3.4.1-1 r --> 3.4.1-2 conda-forge
zeromq: 4.2.5-h439df22_0 anaconda --> 4.2.5-1 conda-forge
The following packages will be DOWNGRADED:
libpng: 1.6.34-hb9fc6fc_0 anaconda --> 1.6.28-2 conda-forge
libtiff: 4.0.9-he85c1e1_1 --> 4.0.7-1 conda-forge
pyqt: 5.6.0-py36_2 --> 4.11.4-py36_3 conda-forge
qt: 5.6.2-5 --> 4.8.7-4
readline: 6.2-2 --> 6.2-0 conda-forge
sip: 4.19.8-py36hf484d3e_0 anaconda --> 4.18-py36_1 conda-forge
Downloading and Extracting Packages
certifi-2018.4.16 | 142 KB | ################################################################### | 100%
Preparing transaction: done
Verifying transaction: -
SafetyError: The package for r-base located at /home/ucsd-train25/anaconda2/pkgs/r-base-3.4.1-2
appears to be corrupted. The path 'lib/R/doc/html/packages.html'
has a sha256 mismatch.
reported sha256: 7d66db1bf6965741f31d52ee0085f61fac29983b5ba6d5372785531af39c0299
actual sha256: 779eb4f5a4fe2756d864732152d8f59b5cb9c1cc8fdc0bf40cf3d25075dd4a96
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/cjpeg'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/djpeg'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/jpegtran'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/rdjpgcom'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/wrjpgcom'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'include/jconfig.h'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'include/jerror.h'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'include/jmorecfg.h'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'include/jpeglib.h'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'lib/libjpeg.a'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'lib/libjpeg.so'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/cjpeg.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/djpeg.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/jpegtran.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/rdjpgcom.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/wrjpgcom.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::readline-6.2-0' cannot be installed due to a
path collision for 'share/info/dir'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::libgcc-ng-7.2.0-hdf63c60_3', which is already installed in the prefix.
done
Executing transaction: done
(R-Seurat) [ucsd-train25@tscc-login1 ~]$ conda install -y -c conda-forge libjpeg-turbo=1.5 zeromq=4.2.5 readline=6.2
Solving environment: done
Package Plan
environment location: /home/ucsd-train25/anaconda2/envs/R-Seurat
added / updated specs:
- libjpeg-turbo=1.5
- readline=6.2
- zeromq=4.2.5
The following packages will be downloaded:
The following NEW packages will be INSTALLED:
The following packages will be UPDATED:
The following packages will be DOWNGRADED:
Downloading and Extracting Packages
certifi-2018.4.16 | 142 KB | ################################################################### | 100%
Preparing transaction: done
Verifying transaction: /
SafetyError: The package for r-base located at /home/ucsd-train25/anaconda2/pkgs/r-base-3.4.1-2
appears to be corrupted. The path 'lib/R/doc/html/packages.html'
has a sha256 mismatch.
reported sha256: 7d66db1bf6965741f31d52ee0085f61fac29983b5ba6d5372785531af39c0299
actual sha256: 779eb4f5a4fe2756d864732152d8f59b5cb9c1cc8fdc0bf40cf3d25075dd4a96
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/cjpeg'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/djpeg'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/jpegtran'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/rdjpgcom'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'bin/wrjpgcom'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'include/jconfig.h'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'include/jerror.h'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'include/jmorecfg.h'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'include/jpeglib.h'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'lib/libjpeg.a'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'lib/libjpeg.so'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/cjpeg.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/djpeg.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/jpegtran.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/rdjpgcom.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::libjpeg-turbo-1.5.90-0' cannot be installed due to a
path collision for 'share/man/man1/wrjpgcom.1'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::jpeg-9b-h024ee3a_2', which is already installed in the prefix.
ClobberError: The package 'conda-forge::readline-6.2-0' cannot be installed due to a
path collision for 'share/info/dir'.
This path already exists in the target prefix, and it won't be removed by
an uninstall action in this transaction. The path appears to be coming from
the package 'anaconda::libgcc-ng-7.2.0-hdf63c60_3', which is already installed in the prefix.
Executing transaction: done