RVM + bundle install for gem w/ native extensions fails, but gem install succeeds

gistfile1.txt

$ bundle install
Installing nokogiri (1.4.4) with native extensions /usr/local/rvm/rubies/ree-1.8.7-2011.03/lib/ruby/site_ruby/1.8/rubygems/installer.rb:533:in `build_extensions': ERROR: Failed to build gem native extension. (Gem::Installer::ExtensionBuildError)

        /usr/local/rvm/rubies/ree-1.8.7-2011.03/bin/ruby extconf.rb 

Gem files will remain installed in /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/nokogiri-1.4.4 for inspection.
Results logged to /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/nokogiri-1.4.4/ext/nokogiri/gem_make.out
	from /usr/local/rvm/rubies/ree-1.8.7-2011.03/lib/ruby/site_ruby/1.8/rubygems/installer.rb:486:in `each'
	from /usr/local/rvm/rubies/ree-1.8.7-2011.03/lib/ruby/site_ruby/1.8/rubygems/installer.rb:486:in `build_extensions'
	from /usr/local/rvm/rubies/ree-1.8.7-2011.03/lib/ruby/site_ruby/1.8/rubygems/installer.rb:159:in `install'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/source.rb:100:in `install'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/installer.rb:58:in `run'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/rubygems_integration.rb:90:in `with_build_args'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/installer.rb:57:in `run'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/spec_set.rb:12:in `each'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/spec_set.rb:12:in `each'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/installer.rb:49:in `run'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/installer.rb:8:in `install'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/cli.rb:222:in `install'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/vendor/thor/task.rb:22:in `send'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/vendor/thor/task.rb:22:in `run'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/vendor/thor/invocation.rb:118:in `invoke_task'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/vendor/thor.rb:246:in `dispatch'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/lib/bundler/vendor/thor/base.rb:389:in `start'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/bundler-1.0.13/bin/bundle:13
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/bin/bundle:19:in `load'
	from /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/bin/bundle:19
$ cat /usr/local/rvm/gems/ree-1.8.7-2011.03@hyhull/gems/nokogiri-1.4.4/ext/nokogiri/gem_make.out
/usr/local/rvm/rubies/ree-1.8.7-2011.03/bin/ruby extconf.rb
$ gem install nokogiriBuilding native extensions.  This could take a while...
Successfully installed nokogiri-1.4.4
1 gem installed

This is using rvm 1.6.10 and ree-1.8.7 on a CentOS 5.5 derivative and I've duplicated the same error on a separate Ubuntu 11.04 instance.

Did you get anywhere with this? Hitting same issue trying to bundle RedCloth on ree-1.8.7-2011.03

No. Downgrading rvm to 1.6.3 on the instances that were exhibiting the problem didn't help either. I ended up bringing up several new CentOS 5.4 instances and haven't seen the problem there. What environment are you running where you're seeing this problem?

OS X 10.6.7

I'm starting to think it is a Bundler issue. If I use Rubygems 1.3.5 I can successfully install the gems that Bundler 1.0.13 is failing on. I need to try downgrading to an older Bundler.

I'm using rvm 1.6.3, RubyGems 1.6.2, and Bundler 1.0.13 on OS X 10.6.7 with no problems. I just nuked rvm (rvm implode) and installed the latest 1.6.13 and no problems bundling native gems. I'll try spinning up another Ubuntu instance and see if I can replicate the problem again and if so, try changing RubyGems version down to 1.3.5.