edmundmiller

{"$schema":"https://raw.githubusercontent.com/jsonresume/resume-schema/v1.0.0/schema.json","basics":{"name":"Edmund Miller","label":"PhD Candidate | nf-core Core Team","image":"https://0.gravatar.com/avatar/765e027729c5964a4e5c83b90d6013bb9029b41ef2be474c2fee3eac3ba2be28","email":"hello@edmundmiller.dev","phone":"","url":"https://edmundmiller.dev","summary":"","location":{"countryCode":"US","address":"United States"},"profiles":[{"url":"https://github.com/edmundmiller","username":"edmundmiller","network":"github"},{"network":"LinkedIn","username":"edmundmiller","url":"https://www.linkedin.com/in/edmundmiller/"},{"network":"Mastodon","username":"@emiller@genomic.social","url":"https://genomic.social/@emiller"},{"network":"ORCiD","username":"0000-0002-2398-0334","url":"https://orcid.org/0000-0002-2398-0334"},{"network":"Twitter","username":"E_miller88","url":"https://twitter.com/E_miller88"}]},"work":[{"name":"Element Biosciences","position":"Bioinformatics Engineering Associate","startDate":"2021-08-10","endDa

edmundmiller

name: biostars
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - wget
  - seqkit
  - csvkit
  - parallel

edmundmiller

chr1	122503247	124785432	GJ212202.1
chr1	122026459	122224535	GJ211836.1
chr1	122224635	122503147	GJ211837.1
chr1	124849229	124932724	GJ211857.1
chr1	124785532	124849129	GJ211855.1
chr2	92188145	94090557	GJ211860.1
chr3	91553419	93655574	GJ211871.1
chr3	90772458	91233586	GJ211866.1
chr3	91233686	91247622	GJ211867.1
chr4	49712061	51743951	GJ211881.1

edmundmiller

"chr1"	2574300	2576099	"chr1-2574300+"	"+"	1
"chr1"	4847800	4856749	"chr1-4847800-"	"-"	1
"chr1"	4856600	4857649	"chr1-4856600+"	"+"	1
"chr1"	6419200	6427349	"chr1-6419200+"	"+"	2
"chr1"	6474700	6475299	"chr1-6474700+"	"+"	2
"chr1"	6761300	6764049	"chr1-6761300+"	"+"	2
"chr1"	6801000	6805399	"chr1-6801000-"	"-"	2
"chr1"	7831000	7832499	"chr1-7831000-"	"-"	2
"chr1"	8054000	8054349	"chr1-8054000-"	"-"	3
"chr1"	8154200	8158349	"chr1-8154200-"	"-"	3

edmundmiller

<details>

```
emacs   version    26.3
        features   XPM JPEG TIFF GIF PNG RSVG SOUND DBUS GSETTINGS GLIB NOTIFY LIBSELINUX GNUTLS LIBXML2 FREETYPE M17N_FLT LIBOTF XFT ZLIB TOOLKIT_SCROLL_BARS GTK3 X11 XDBE XIM MODULES THREADS LIBSYSTEMD
        build      Dec 30, 2019
        buildopts  (--prefix=/nix/store/bqvfhil4b775r16hf7bp2pzb4wzhy4bi-emacs-26.3 --disable-build-details --with-modules --with-x-toolkit=gtk3 --with-xft CFLAGS=-DMAC_OS_X_VERSION_MAX_ALLOWED=101200)
        windowsys  x
        daemonp    server-running
doom    version    2.0.9

edmundmiller

λ doom -d re                                                                                               ~
Loading /nix/store/bqvfhil4b775r16hf7bp2pzb4wzhy4bi-emacs-26.3/share/emacs/site-lisp/site-start.el (source)...
> Initiating a refresh of Doom Emacs...
  > Regenerating envvars file at "~/.emacs.d/.local/env"
  - Scraping shell environment
    - Ignoring __ETC_PROFILE_DONE=1
    - Ignoring DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-V2R1grAZha,guid=f8897b6076bb89239a7a922a5e0973cf
    - Ignoring TERM=xterm-termite
    - Ignoring __NIXOS_SET_ENVIRONMENT_DONE=1
    - Ignoring HOME=/home/emiller

edmundmiller

;; -*- lexical-binding: t; -*-
;; This file is autogenerated by Doom, DO NOT EDIT IT!!

(setq load-path '("/home/emiller/.emacs.d/.local/straight/build/drag-stuff" "/home/emiller/.emacs.d/.local/straight/build/ace-link" "/home/emiller/.emacs.d/.local/straight/build/visual-fill-column" "/home/emiller/.emacs.d/.local/straight/build/wordnut" "/home/emiller/.emacs.d/.local/straight/build/langtool" "/home/emiller/.emacs.d/.local/straight/build/mixed-pitch" "/home/emiller/.emacs.d/.local/straight/build/synosaurus" "/home/emiller/.emacs.d/.local/straight/build/elfeed-org" "/home/emiller/.emacs.d/.local/straight/build/elfeed" "/home/emiller/.emacs.d/.local/straight/build/circe-notifications" "/home/emiller/.emacs.d/.local/straight/build/circe" "/home/emiller/.emacs.d/.local/straight/build/counsel-notmuch" "/home/emiller/.emacs.d/.local/straight/build/org-mime" "/home/emiller/.emacs.d/.local/straight/build/notmuch" "/home/emiller/.emacs.d/.local/straight/build/counsel-css" "/home/emiller/.emacs.d/.local/straight/build

edmundmiller

;; -*- lexical-binding: t; -*-
;; This file is autogenerated by Doom, DO NOT EDIT IT!!

(defvar doom-real-buffer-functions '(doom-dired-buffer-p) "A list of predicate functions run to determine if a buffer is real, unlike
`doom-unreal-buffer-functions'. They are passed one argument: the buffer to be
tested.

Should any of its function returns non-nil, the rest of the functions are
ignored and the buffer is considered real.

edmundmiller

Byte-compile anyway? (y or n) y
- Byte-compiling your config (may take a while)...
  > Cleaning .elc files
    - No elc files to clean
  ✓ Compiled init.el

Cannot determine Magit’s version (error "/home/emiller/.emacs.d/.local/straight/repos/magit/lisp/magit.el" repo t static elpa dirname)
  ✓ Compiled modules/config/literate/init.el

Compiling your literate config...

edmundmiller

;; -*- lexical-binding:t; byte-compile-dynamic-docstrings: t; -*-
;; This file is autogenerated by `doom-reload-package-autoloads', DO NOT EDIT !!

(setq load-path (quote ("/home/emiller/.emacs.d/.local/straight/build/ace-link" "/home/emiller/.emacs.d/.local/straight/build/elfeed-org" "/home/emiller/.emacs.d/.local/straight/build/auctex/" "/home/emiller/.emacs.d/.local/straight/build/ess/obsolete/" "/home/emiller/.emacs.d/.local/straight/build/ess/" "/home/emiller/.emacs.d/.local/straight/build/helm-core" "/home/emiller/.emacs.d/.local/straight/build/so-long" "/home/emiller/.emacs.d/.local/straight/build/tablist" "/home/emiller/.emacs.d/.local/straight/build/ob-async" "/home/emiller/.emacs.d/.local/straight/build/rainbow-mode" "/home/emiller/.emacs.d/.local/straight/build/pcre2el" "/home/emiller/.emacs.d/.local/straight/build/flyspell-correct-ivy" "/home/emiller/.emacs.d/.local/straight/build/makefile-executor" "/home/emiller/.emacs.d/.local/straight/build/company-prescient" "/home/emiller/.emacs.d/.local/str