hsds_jobstore.out

#env | grep TOIL
TOIL_WORKDIR=/var/lib/toil
TOIL_S3_HOST=minio.minio-tenant-1.svc.cluster.local
TOIL_AWS_SECRET_NAME=aws-credentials
TOIL_KUBERNETES_HOST_PATH=/media/smb-rivanna/ed4bu/UrfoldServer/urfold_runs/cath_pipeline/h5_restructure/k8/
TOIL_DOCKER_NAME=molmimic
TOIL_S3_USE_SSL=False
TOIL_KUBERNETES_OWNER=default
TOIL_APPLIANCE_SELF=edraizen/molmimic:0.0.1
TOIL_S3_PORT=80
TOIL_DOCKER_REGISTRY=edraizen

Running job with name: cath-paper-test-0
/usr/local/lib/python3.8/dist-packages/requests/__init__.py:102: RequestsDependencyWarning: urllib3 (1.26.7) or chardet (2.3.0)/charset_normalizer (2.0.6) doesn't match a supported version!
  warnings.warn("urllib3 ({}) or chardet ({})/charset_normalizer ({}) doesn't match a supported "
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.statsAndLogging] Suppressing the following loggers: {'urllib3', 'asyncio', 'bcdocs', 'molmimic', 'docker', 'adal-python', 'charset_normalizer', 'requests_oauthlib', 'kubernetes', 'requests', 'botocore', 'sklearn', 's3transfer', 'boto3', 'oauthlib', 'dill', 'concurrent', 'google_auth_oauthlib', 'numexpr', 'websocket', 'pymesos', 'boto', 'google'}
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.statsAndLogging] Root logger is at level 'DEBUG', 'toil' logger at level 'DEBUG'.
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Instantiating <class 'toil.jobStores.hsdsJobStore.HSDSJobStore'> for HSDS domain us-east-1:/home/ed4bu/cath-paper-test-0
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Instantiating <class 'toil.jobStores.hsdsJobStore.HSDSJobStore'> for region us-east-1 and name prefix 'home-ed4bu-cath-paper-test-0'
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Using alternate endpoint http://minio.minio-tenant-1.svc.cluster.local:80
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] HttpCon.init(domain: /home/ed4bu/cath-paper-test-0-jobstore.h5 use_session: True use_cache: False retries: 100)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: / [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/ [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET params getdnids:1
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 410
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT params: {'getdnids': 1, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5'}
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT: / format: json [2 bytes]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 201
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] clearing domain_json cache
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT returning: <Response [201]>
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /acls/ed4bu@virginia.edu [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/acls/ed4bu@virginia.edu [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/attributes/exists [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/attributes/exists [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 404
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] Got response: 404
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] attrs.create(exists)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] attrs.create type_json: {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/attributes/exists format: json [148 bytes]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 201
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT returning: <Response [201]>
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT rsp status_code: 201
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Binding to job store table 'jobs'.
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] group.__getitem__(jobs)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] __get_link_json(jobs)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/jobs [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/jobs [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 404
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] Got response: 404
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: / [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/ [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] POST: /datasets [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] POST: /datasets
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-1763-4701d7-2c6b1d', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'job_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'overlargeID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/jobs format: json [48 bytes]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 201
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT returning: <Response [201]>
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT rsp status_code: 201
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] group.__getitem__(jobs)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] __get_link_json(jobs)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/jobs [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/jobs [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] rsp_json: {'link': {'title': 'jobs', 'class': 'H5L_TYPE_HARD', 'id': 'd-2e0c2ba1-ba058526-1763-4701d7-2c6b1d', 'collection': 'datasets'}, 'created': 1640061185.7920659, 'lastModified': 1640061185.7920659, 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/jobs?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'target', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-1763-4701d7-2c6b1d', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'job_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'overlargeID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Binding to job store table 'files'.
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/files [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/files [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 404
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] Got response: 404
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] POST: /datasets [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] POST: /datasets
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/files format: json [48 bytes]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 201
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT returning: <Response [201]>
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] PUT rsp status_code: 201
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/files [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/files [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] rsp_json: {'link': {'title': 'files', 'class': 'H5L_TYPE_HARD', 'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'collection': 'datasets'}, 'created': 1640061185.8752837, 'lastModified': 1640061185.8752837, 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/links/files?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'target', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:05+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:05+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Binding to job store bucket 'home-ed4bu-cath-paper-test-0--files'.
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Bucket 'home-ed4bu-cath-paper-test-0--files' does not exist.
[2021-12-21T04:33:05+0000] [MainThread] [D] [toil.lib.aws.utils] Creating bucket 'home-ed4bu-cath-paper-test-0--files' in region us-east-1.
[2021-12-21T04:33:06+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Created new job store bucket 'home-ed4bu-cath-paper-test-0--files' with versioning state True.
[2021-12-21T04:33:06+0000] [MainThread] [D] [toil.jobStores.abstractJobStore] The workflow ID is: 'da3c1a5c-cafa-42e5-977f-1aa8d1592ab3'
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:06+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:06+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:06+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] query 0 jobs for 'file_id==a77581f6-ad82-5142-acb7-5a6b01eab3fb'
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:06+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:06+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:06+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all files: []
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:06+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:06+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:06+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:06+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Starting sha1 checksum to match None
[2021-12-21T04:33:06+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Updating checksum with 2165 bytes
[2021-12-21T04:33:06+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Starting multipart upload
[2021-12-21T04:33:06+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Multipart upload started as 22279988-5686-4b19-b8c9-fe4e1617d40c
[2021-12-21T04:33:06+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Multipart upload visible as 22279988-5686-4b19-b8c9-fe4e1617d40c
[2021-12-21T04:33:06+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 1 of 2165 bytes to 22279988-5686-4b19-b8c9-fe4e1617d40c
[2021-12-21T04:33:07+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Completed checksum with hash ff8e450fda10698c36f2b287cc7714001fda9f68 vs. expected None
[2021-12-21T04:33:07+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Attempting to complete upload...
[2021-12-21T04:33:07+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Completed upload object of type <class 'dict'>: {'ResponseMetadata': {'RequestId': '16C2AAF5CD3EF086', 'HostId': '', 'HTTPStatusCode': 200, 'HTTPHeaders': {'accept-ranges': 'bytes', 'cache-control': 'no-cache', 'content-length': '445', 'content-security-policy': 'block-all-mixed-content', 'content-type': 'application/xml', 'etag': '"7db3556b57dabcf6e9346a748e625336-1"', 'server': 'MinIO', 'strict-transport-security': 'max-age=31536000; includeSubDomains', 'vary': 'Origin, Accept-Encoding', 'x-accel-buffering': 'no', 'x-amz-request-id': '16C2AAF5CD3EF086', 'x-content-type-options': 'nosniff', 'x-xss-protection': '1; mode=block', 'x-amz-version-id': '83c70c92-daf0-43c5-a779-759fdf793ada', 'date': 'Tue, 21 Dec 2021 04:33:07 GMT'}, 'RetryAttempts': 0}, 'VersionId': '83c70c92-daf0-43c5-a779-759fdf793ada', 'Location': 'http://minio.minio-tenant-1.svc.cluster.local/home-ed4bu-cath-paper-test-0--files/a77581f6-ad82-5142-acb7-5a6b01eab3fb', 'Bucket': 'home-ed4bu-cath-paper-test-0--files', 'Key': 'a77581f6-ad82-5142-acb7-5a6b01eab3fb', 'ETag': '"7db3556b57dabcf6e9346a748e625336-1"'}
[2021-12-21T04:33:07+0000] [Thread-1  ] [D] [toil.jobStores.aws.baseS3JobStore] Completed upload with version 83c70c92-daf0-43c5-a779-759fdf793ada
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: None
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', '']]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['a77581f6-ad82-5142-acb7-5a6b01eab3fb'
  '891f7db6-e4d9-4221-a58e-ab6cc4395f94' '0'
  '83c70c92-daf0-43c5-a779-759fdf793ada'
  'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68' '0' '000' '']]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields=['000']
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', '')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'numChunks': 0, 'ownerID': '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 'encrypted': False, 'version': '83c70c92-daf0-43c5-a779-759fdf793ada', 'checksum': 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='a77581f6-ad82-5142-acb7-5a6b01eab3fb'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] data: [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', '')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [212 bytes]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [1], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset shape: (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape: (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection._sel: ((0,), (1,), (1,), (False,))
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] selection: start (0,) stop [1] step (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] start: [0]  stop: [1]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_stop: 1
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_mshape: (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:1:1]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] returning binary content, length: 185
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] binary response, 185 bytes
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] slices: [slice(0, 1, None)]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new page_start: [1]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got arr: (1,), cleaning up shape!
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (a77581f6-ad82-5142-acb7-5a6b01eab3fb; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)]; New items: [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', '')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Wrote FileInfo(fileID='a77581f6-ad82-5142-acb7-5a6b01eab3fb', ownerID='891f7db6-e4d9-4221-a58e-ab6cc4395f94', encrypted=False, version='83c70c92-daf0-43c5-a779-759fdf793ada', previousVersion='83c70c92-daf0-43c5-a779-759fdf793ada', content=None, checksum='sha1$ff8e450fda1...7cc7714001fda9f68', _numContentChunks=0) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490> for shared file 'config.pickle'.
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] attrs.create(exists)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] attrs.create type_json: {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/attributes/exists format: json [147 bytes]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 409
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT returning: <Response [409]>
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT rsp status_code: 409
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] Update to existing attribute (exists), deleting it
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] DEL: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/attributes/exists [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] DEL: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/attributes/exists
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT: /groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae/attributes/exists format: json [147 bytes]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 201
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT returning: <Response [201]>
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT rsp status_code: 201
[2021-12-21T04:33:07+0000] [Thread-2  ] [D] [toil.jobStores.aws.baseS3JobStore] Inlining content of 2 bytes
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: b'{}'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [1], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, '', '', 1, '000', 'VXt9']]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['0e1e20d3-7689-4a71-9222-5e4d31fc8f88'
  'bfcf5286-4bc7-41ef-a85d-9ab415b69d53' '0' '' '' '1' '000' 'VXt9']]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', '000', 'encrypted'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields={'000'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, '', '', 1, '000', 'VXt9')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'000': b'VXt9', 'numChunks': 1, 'ownerID': 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 'encrypted': False, 'version': '', 'checksum': ''}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [1], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] query param: [0:1]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] params: {'query': "file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'", 'select': '[0:1]'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params query:file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:1]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [1], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] query param: [0:1]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] params: {'query': "file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'", 'select': '[0:1]'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params query:file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:1]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [1], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] data: [('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, '', '', 1, '000', 'VXt9')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [135 bytes]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [2], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset shape: (2,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape: (2,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection._sel: ((0,), (2,), (1,), (False,))
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] selection: start (0,) stop [2] step (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] start: [0]  stop: [2]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_stop: 2
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_mshape: (2,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:2:1]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] returning binary content, length: 293
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] binary response, 293 bytes
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] slices: [slice(0, 2, None)]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new page_start: [2]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got arr: (2,), cleaning up shape!
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (0e1e20d3-7689-4a71-9222-5e4d31fc8f88; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')]; New items: [('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, '', '', 1, '000', 'VXt9')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.resource] Module dir is /opt/venv/lib/python3.8/site-packages, our prefix is /opt/venv, virtualenv: True
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.resource] Discovering real name of module
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.resource] Script was invoked as a module
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.resource] Module dir is /opt/venv/lib/python3.8/site-packages, our prefix is /opt/venv, virtualenv: True
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [2], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] query 2 jobs for 'file_id==79bad63b-c331-5212-a0d2-d06a788c4b3c'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [2], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset shape: (2,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape: (2,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection._sel: ((0,), (2,), (1,), (False,))
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] selection: start (0,) stop [2] step (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] start: [0]  stop: [2]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_stop: 2
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_mshape: (2,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:2:1]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] returning binary content, length: 293
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] binary response, 293 bytes
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] slices: [slice(0, 2, None)]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new page_start: [2]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got arr: (2,), cleaning up shape!
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all files: [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [2], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 2
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] query param: [0:2]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] params: {'query': "file_id=='79bad63b-c331-5212-a0d2-d06a788c4b3c'", 'select': '[0:2]'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params query:file_id=='79bad63b-c331-5212-a0d2-d06a788c4b3c'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:2]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:07+0000] [Thread-3  ] [D] [toil.jobStores.aws.baseS3JobStore] Inlining content of 1 bytes
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: b'1'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [2], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VTE=']]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['79bad63b-c331-5212-a0d2-d06a788c4b3c'
  '891f7db6-e4d9-4221-a58e-ab6cc4395f94' '0' '' '' '1' '000' 'VTE=']]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', '000', 'encrypted'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields={'000'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VTE=')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'000': b'VTE=', 'numChunks': 1, 'ownerID': '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 'encrypted': False, 'version': '', 'checksum': ''}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [2], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 2
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] query param: [0:2]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] params: {'query': "file_id=='79bad63b-c331-5212-a0d2-d06a788c4b3c'", 'select': '[0:2]'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params query:file_id=='79bad63b-c331-5212-a0d2-d06a788c4b3c'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:2]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='79bad63b-c331-5212-a0d2-d06a788c4b3c'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [2], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 2
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] query param: [0:2]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] params: {'query': "file_id=='79bad63b-c331-5212-a0d2-d06a788c4b3c'", 'select': '[0:2]'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params query:file_id=='79bad63b-c331-5212-a0d2-d06a788c4b3c'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:2]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [2], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] data: [('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VTE=')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [135 bytes]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [3], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset shape: (3,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape: (3,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection._sel: ((0,), (3,), (1,), (False,))
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] selection: start (0,) stop [3] step (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] start: [0]  stop: [3]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_stop: 3
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_mshape: (3,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:3:1]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] returning binary content, length: 401
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] binary response, 401 bytes
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] slices: [slice(0, 3, None)]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new page_start: [3]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got arr: (3,), cleaning up shape!
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (79bad63b-c331-5212-a0d2-d06a788c4b3c; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')]; New items: [('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VTE=')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Wrote FileInfo(fileID='79bad63b-c331-5212-a0d2-d06a788c4b3c', ownerID='891f7db6-e4d9-4221-a58e-ab6cc4395f94', encrypted=False, version='', previousVersion='', content=b'1', checksum='', _numContentChunks=1) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490> for shared file 'pid.log'.
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.common] Using the kubernetes batch system
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.common] Obtained node ID bd5825a8d9bb69b2296ba2c9614faf6e from file /var/lib/dbus/machine-id
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.common] Created the workflow directory for this machine at /var/lib/toil/65b8e3432c23529a80fbe6735579fb34
[2021-12-21T04:33:07+0000] [Thread-4  ] [D] [toil.batchSystems.singleMachine] Started daddy thread for batch system 139677338203136.
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.batchSystems.singleMachine] Started batch system 139677338203136 in normal mode.
[2021-12-21T04:33:07+0000] [MainThread] [I] [toil] Overriding docker registry of quay.io/ucsc_cgl with edraizen from TOIL_DOCKER_REGISTRY.
[2021-12-21T04:33:07+0000] [MainThread] [I] [toil] Overriding docker name of toil with molmimic from TOIL_DOCKER_NAME.
[2021-12-21T04:33:07+0000] [MainThread] [I] [toil] Overriding docker appliance of edraizen/molmimic:5.6.0a1-458a26c04268e57ebace072e1d64b6a087e99e51-dirty-py3.8 with edraizen/molmimic:0.0.1 from TOIL_APPLIANCE_SELF.
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [3], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] query 3 jobs for 'file_id==6681340b-9a30-5117-9d8c-f805c4e9ebd8'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [3], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset shape: (3,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape: (3,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection._sel: ((0,), (3,), (1,), (False,))
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] selection: start (0,) stop [3] step (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] start: [0]  stop: [3]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_stop: 3
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_mshape: (3,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:3:1]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] returning binary content, length: 401
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] binary response, 401 bytes
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] slices: [slice(0, 3, None)]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new page_start: [3]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got arr: (3,), cleaning up shape!
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all files: [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [3], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 3
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] query param: [0:3]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] params: {'query': "file_id=='6681340b-9a30-5117-9d8c-f805c4e9ebd8'", 'select': '[0:3]'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params query:file_id=='6681340b-9a30-5117-9d8c-f805c4e9ebd8'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:3]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:07+0000] [Thread-5  ] [D] [toil.jobStores.aws.baseS3JobStore] Inlining content of 124 bytes
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: b'\x80\x05\x95q\x00\x00\x00\x00\x00\x00\x00\x8c\rtoil.resource\x94\x8c\x10ModuleDescriptor\x94\x93\x94\x8c%/opt/venv/lib/python3.8/site-packages\x94\x8c\x1bmolmimic.generate_data.main\x94\x88\x87\x94\x81\x94.'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [3], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=']]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['6681340b-9a30-5117-9d8c-f805c4e9ebd8'
  '891f7db6-e4d9-4221-a58e-ab6cc4395f94' '0' '' '' '1' '000'
  'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=']]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', '000', 'encrypted'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields={'000'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'000': b'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=', 'numChunks': 1, 'ownerID': '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 'encrypted': False, 'version': '', 'checksum': ''}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [3], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 3
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] query param: [0:3]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] params: {'query': "file_id=='6681340b-9a30-5117-9d8c-f805c4e9ebd8'", 'select': '[0:3]'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params query:file_id=='6681340b-9a30-5117-9d8c-f805c4e9ebd8'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:3]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='6681340b-9a30-5117-9d8c-f805c4e9ebd8'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [3], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 3
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] query param: [0:3]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] params: {'query': "file_id=='6681340b-9a30-5117-9d8c-f805c4e9ebd8'", 'select': '[0:3]'}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params query:file_id=='6681340b-9a30-5117-9d8c-f805c4e9ebd8'
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:3]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [3], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] data: [('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [299 bytes]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [4], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] dataset shape: (4,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape: (4,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] selection._sel: ((0,), (4,), (1,), (False,))
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] selection: start (0,) stop [4] step (1,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] start: [0]  stop: [4]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_stop: 4
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] page_mshape: (4,)
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] GET params select:[0:4:1]
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] returning binary content, length: 673
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] binary response, 673 bytes
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] slices: [slice(0, 4, None)]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] new page_start: [4]
[2021-12-21T04:33:07+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:07+0000] [MainThread] [I] [root] got arr: (4,), cleaning up shape!
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (6681340b-9a30-5117-9d8c-f805c4e9ebd8; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')]; New items: [('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')]
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Wrote FileInfo(fileID='6681340b-9a30-5117-9d8c-f805c4e9ebd8', ownerID='891f7db6-e4d9-4221-a58e-ab6cc4395f94', encrypted=False, version='', previousVersion='', content=b'\x80\x05\x9...\x94\x81\x94.', checksum='', _numContentChunks=1) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490> for shared file 'userScript'.
[2021-12-21T04:33:07+0000] [MainThread] [D] [toil.common] Saving user script ModuleDescriptor(dirPath='/opt/venv/lib/python3.8/site-packages', name='molmimic.generate_data.main', fromVirtualEnv=True) as a resource
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [4], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:10+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] query 4 jobs for 'file_id==74127688-75d6-5d33-a0c0-70a46674cec8'
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [4], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] dataset shape: (4,)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] mshape: (4,)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] selection._sel: ((0,), (4,), (1,), (False,))
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] selection: start (0,) stop [4] step (1,)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] start: [0]  stop: [4]
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] page_stop: 4
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] page_mshape: (4,)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] GET params select:[0:4:1]
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] returning binary content, length: 673
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] binary response, 673 bytes
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] slices: [slice(0, 4, None)]
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] new page_start: [4]
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] got arr: (4,), cleaning up shape!
[2021-12-21T04:33:10+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all files: [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')]
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [4], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 4
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] query param: [0:4]
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] params: {'query': "file_id=='74127688-75d6-5d33-a0c0-70a46674cec8'", 'select': '[0:4]'}
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] GET params query:file_id=='74127688-75d6-5d33-a0c0-70a46674cec8'
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] GET params select:[0:4]
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:10+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:10+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:12+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Starting sha1 checksum to match None
[2021-12-21T04:33:12+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Updating checksum with 52428800 bytes
[2021-12-21T04:33:12+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Starting multipart upload
[2021-12-21T04:33:12+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Multipart upload started as 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:12+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Multipart upload visible as 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:12+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 1 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:12+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 2 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:13+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 3 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:14+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 4 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:14+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 5 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:15+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 6 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:15+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 7 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:16+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 8 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:17+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 9 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:17+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 10 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:18+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 11 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:19+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 12 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:19+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 13 of 52428800 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:20+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 14 of 54117 bytes to 674de256-3d35-4856-bd36-0c3cb40a866a
[2021-12-21T04:33:20+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Completed checksum with hash 4f8fcf9c6b400c9426039896ac00fc859f650cb1 vs. expected None
[2021-12-21T04:33:20+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Attempting to complete upload...
[2021-12-21T04:33:20+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Completed upload object of type <class 'dict'>: {'ResponseMetadata': {'RequestId': '16C2AAF909FB9B81', 'HostId': '', 'HTTPStatusCode': 200, 'HTTPHeaders': {'accept-ranges': 'bytes', 'cache-control': 'no-cache', 'content-length': '446', 'content-security-policy': 'block-all-mixed-content', 'content-type': 'application/xml', 'etag': '"06907f01181333d86ca972043be38cbe-14"', 'server': 'MinIO', 'strict-transport-security': 'max-age=31536000; includeSubDomains', 'vary': 'Origin, Accept-Encoding', 'x-accel-buffering': 'no', 'x-amz-request-id': '16C2AAF909FB9B81', 'x-content-type-options': 'nosniff', 'x-xss-protection': '1; mode=block', 'x-amz-version-id': 'f0f80579-a3f3-44cc-8300-99044d375db5', 'date': 'Tue, 21 Dec 2021 04:33:20 GMT'}, 'RetryAttempts': 0}, 'VersionId': 'f0f80579-a3f3-44cc-8300-99044d375db5', 'Location': 'http://minio.minio-tenant-1.svc.cluster.local/home-ed4bu-cath-paper-test-0--files/74127688-75d6-5d33-a0c0-70a46674cec8', 'Bucket': 'home-ed4bu-cath-paper-test-0--files', 'Key': '74127688-75d6-5d33-a0c0-70a46674cec8', 'ETag': '"06907f01181333d86ca972043be38cbe-14"'}
[2021-12-21T04:33:20+0000] [Thread-6  ] [D] [toil.jobStores.aws.baseS3JobStore] Completed upload with version f0f80579-a3f3-44cc-8300-99044d375db5
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: None
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [4], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', '']]
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['74127688-75d6-5d33-a0c0-70a46674cec8'
  '891f7db6-e4d9-4221-a58e-ab6cc4395f94' '0'
  'f0f80579-a3f3-44cc-8300-99044d375db5'
  'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1' '0' '000' '']]
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields=['000']
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', '')]
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'numChunks': 0, 'ownerID': '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 'encrypted': False, 'version': 'f0f80579-a3f3-44cc-8300-99044d375db5', 'checksum': 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1'}
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [4], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 4
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] query param: [0:4]
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] params: {'query': "file_id=='74127688-75d6-5d33-a0c0-70a46674cec8'", 'select': '[0:4]'}
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET params query:file_id=='74127688-75d6-5d33-a0c0-70a46674cec8'
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET params select:[0:4]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='74127688-75d6-5d33-a0c0-70a46674cec8'
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [4], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 4
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] query param: [0:4]
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] params: {'query': "file_id=='74127688-75d6-5d33-a0c0-70a46674cec8'", 'select': '[0:4]'}
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET params query:file_id=='74127688-75d6-5d33-a0c0-70a46674cec8'
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET params select:[0:4]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [4], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] data: [('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', '')]
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [212 bytes]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] dataset shape: (5,)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] mshape: (5,)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] selection._sel: ((0,), (5,), (1,), (False,))
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] selection: start (0,) stop [5] step (1,)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] start: [0]  stop: [5]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] page_stop: 5
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] page_mshape: (5,)
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] GET params select:[0:5:1]
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] returning binary content, length: 858
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] binary response, 858 bytes
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] slices: [slice(0, 5, None)]
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] new page_start: [5]
[2021-12-21T04:33:20+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:20+0000] [MainThread] [I] [root] got arr: (5,), cleaning up shape!
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (74127688-75d6-5d33-a0c0-70a46674cec8; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)]; New items: [('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', '')]
[2021-12-21T04:33:20+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Wrote FileInfo(fileID='74127688-75d6-5d33-a0c0-70a46674cec8', ownerID='891f7db6-e4d9-4221-a58e-ab6cc4395f94', encrypted=False, version='f0f80579-a3f3-44cc-8300-99044d375db5', previousVersion='f0f80579-a3f3-44cc-8300-99044d375db5', content=None, checksum='sha1$4f8fcf9c6b4...6ac00fc859f650cb1', _numContentChunks=0) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490> for shared file 'b802b5338ec749c5ebb085e87438042d'.
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] query 5 jobs for 'file_id==74127688-75d6-5d33-a0c0-70a46674cec8'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset shape: (5,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape: (5,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection._sel: ((0,), (5,), (1,), (False,))
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] selection: start (0,) stop [5] step (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] start: [0]  stop: [5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_stop: 5
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_mshape: (5,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:5:1]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] returning binary content, length: 858
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] binary response, 858 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] slices: [slice(0, 5, None)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new page_start: [5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got arr: (5,), cleaning up shape!
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all files: [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 5
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='74127688-75d6-5d33-a0c0-70a46674cec8'", 'select': '[0:5]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='74127688-75d6-5d33-a0c0-70a46674cec8'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [4], 'value': [['74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0]], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 1 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 1 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] JOBITEM: {'name': '74127688-75d6-5d33-a0c0-70a46674cec8', 'ownerID': '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 'encrypted': 'False', 'version': 'f0f80579-a3f3-44cc-8300-99044d375db5', 'checksum': 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 'numChunks': 0, 'chunks': None, '000': ''}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.utils] Creating binary from 0 chunks: [(0, '')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] {"Version": "2012-10-17", "Statement": [{"Effect": "Allow", "Principal": "*", "Action": ["s3:GetBucketLocation", "s3:ListBucket", "s3:DeleteObject", "s3:GetObject", "s3:ListMultipartUploadParts", "s3:PutObject"], "Resource": ["arn:aws:s3:::home-ed4bu-cath-paper-test-0--files*", "arn:aws:s3:::home-ed4bu-cath-paper-test-0--files/*"]}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.common] Injecting user script VirtualEnvResource(name='site-packages', pathHash='b802b5338ec749c5ebb085e87438042d', url='http://minio.minio-tenant-1.svc.cluster.local:80/home-ed4bu-cath-paper-test-0--files/74127688-75d6-5d33-a0c0-70a46674cec8?versionId=f0f80579-a3f3-44cc-8300-99044d375db5&Expires=1671597201', contentHash='2f3ab5f9bfa792df7f5215f2f5c08cce') into batch system.
[2021-12-21T04:33:21+0000] [MainThread] [I] [toil.batchSystems.kubernetes] Setting user script for deployment: VirtualEnvResource(name='site-packages', pathHash='b802b5338ec749c5ebb085e87438042d', url='http://minio.minio-tenant-1.svc.cluster.local:80/home-ed4bu-cath-paper-test-0--files/74127688-75d6-5d33-a0c0-70a46674cec8?versionId=f0f80579-a3f3-44cc-8300-99044d375db5&Expires=1671597201', contentHash='2f3ab5f9bfa792df7f5215f2f5c08cce')
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] query 5 jobs for 'file_id==01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset shape: (5,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape: (5,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection._sel: ((0,), (5,), (1,), (False,))
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] selection: start (0,) stop [5] step (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] start: [0]  stop: [5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_stop: 5
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_mshape: (5,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:5:1]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] returning binary content, length: 858
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] binary response, 858 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] slices: [slice(0, 5, None)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new page_start: [5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got arr: (5,), cleaning up shape!
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all files: [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 5
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a'", 'select': '[0:5]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Starting sha1 checksum to match None
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Updating checksum with 1908 bytes
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Starting multipart upload
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Multipart upload started as fa7622e9-746c-4b21-b2a4-39cf6a08c4e2
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Multipart upload visible as fa7622e9-746c-4b21-b2a4-39cf6a08c4e2
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 1 of 1908 bytes to fa7622e9-746c-4b21-b2a4-39cf6a08c4e2
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Completed checksum with hash 825ad8f956d241a90e62b4eafe59256d6f52e9c0 vs. expected None
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Attempting to complete upload...
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Completed upload object of type <class 'dict'>: {'ResponseMetadata': {'RequestId': '16C2AAF919CA8B34', 'HostId': '', 'HTTPStatusCode': 200, 'HTTPHeaders': {'accept-ranges': 'bytes', 'cache-control': 'no-cache', 'content-length': '445', 'content-security-policy': 'block-all-mixed-content', 'content-type': 'application/xml', 'etag': '"3c37c1ea236c354cb928d4119aeade76-1"', 'server': 'MinIO', 'strict-transport-security': 'max-age=31536000; includeSubDomains', 'vary': 'Origin, Accept-Encoding', 'x-accel-buffering': 'no', 'x-amz-request-id': '16C2AAF919CA8B34', 'x-content-type-options': 'nosniff', 'x-xss-protection': '1; mode=block', 'x-amz-version-id': 'df154660-6a51-4726-b275-bd209607ccf6', 'date': 'Tue, 21 Dec 2021 04:33:21 GMT'}, 'RetryAttempts': 0}, 'VersionId': 'df154660-6a51-4726-b275-bd209607ccf6', 'Location': 'http://minio.minio-tenant-1.svc.cluster.local/home-ed4bu-cath-paper-test-0--files/01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', 'Bucket': 'home-ed4bu-cath-paper-test-0--files', 'Key': '01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', 'ETag': '"3c37c1ea236c354cb928d4119aeade76-1"'}
[2021-12-21T04:33:21+0000] [Thread-7  ] [D] [toil.jobStores.aws.baseS3JobStore] Completed upload with version df154660-6a51-4726-b275-bd209607ccf6
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: None
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', '']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a'
  '891f7db6-e4d9-4221-a58e-ab6cc4395f94' '0'
  'df154660-6a51-4726-b275-bd209607ccf6'
  'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0' '0' '000' '']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields=['000']
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', '')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'numChunks': 0, 'ownerID': '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 'encrypted': False, 'version': 'df154660-6a51-4726-b275-bd209607ccf6', 'checksum': 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 5
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a'", 'select': '[0:5]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 5
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a'", 'select': '[0:5]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [5], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data: [('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', '')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [212 bytes]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [6], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset shape: (6,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape: (6,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection._sel: ((0,), (6,), (1,), (False,))
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] selection: start (0,) stop [6] step (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] start: [0]  stop: [6]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_stop: 6
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_mshape: (6,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:6:1]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] returning binary content, length: 1043
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] binary response, 1043 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] slices: [slice(0, 6, None)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new page_start: [6]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got arr: (6,), cleaning up shape!
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)
 ('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', 0)]; New items: [('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', '')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Wrote FileInfo(fileID='01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', ownerID='891f7db6-e4d9-4221-a58e-ab6cc4395f94', encrypted=False, version='df154660-6a51-4726-b275-bd209607ccf6', previousVersion='df154660-6a51-4726-b275-bd209607ccf6', content=None, checksum='sha1$825ad8f956d...afe59256d6f52e9c0', _numContentChunks=0) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490> for shared file 'environment.pickle'.
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.common] Written the environment for the jobs to the environment file
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.common] Caching all jobs in job store
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(jobs)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(jobs)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-1763-4701d7-2c6b1d', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'job_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'overlargeID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('job_id', 'O'), ('overlargeID', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All jobs []
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.common] 0 jobs downloaded.
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [6], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] query 6 jobs for 'file_id==de90cdf4-4065-5763-8ae2-b71758c6f931'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [6], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset shape: (6,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape: (6,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection._sel: ((0,), (6,), (1,), (False,))
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] selection: start (0,) stop [6] step (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] start: [0]  stop: [6]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_stop: 6
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_mshape: (6,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:6:1]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] returning binary content, length: 1043
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] binary response, 1043 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] slices: [slice(0, 6, None)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new page_start: [6]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got arr: (6,), cleaning up shape!
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all files: [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)
 ('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', 0)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [6], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 6
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:6]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='de90cdf4-4065-5763-8ae2-b71758c6f931'", 'select': '[0:6]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='de90cdf4-4065-5763-8ae2-b71758c6f931'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:6]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.job] Issuing promise 1b52fa8c-d515-4d60-bf65-b892585dcdb5 for result of 'start_toil' TemporaryID(d4e42b10-b527-4246-b34c-eea3fd4715a7) v0
[2021-12-21T04:33:21+0000] [Thread-9  ] [D] [toil.jobStores.aws.baseS3JobStore] Inlining content of 199 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: b"\x80\x05\x95\xbc\x00\x00\x00\x00\x00\x00\x00\x8c\x08toil.job\x94\x8c\x1aUnfulfilledPromiseSentinel\x94\x93\x94)\x81\x94}\x94(\x8c\x11fulfillingJobName\x94\x8cA'start_toil' TemporaryID(d4e42b10-b527-4246-b34c-eea3fd4715a7) v0\x94\x8c\x07file_id\x94\x8c$1b52fa8c-d515-4d60-bf65-b892585dcdb5\x94ub."
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [6], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['1b52fa8c-d515-4d60-bf65-b892585dcdb5', '', 0, '', '', 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['1b52fa8c-d515-4d60-bf65-b892585dcdb5' '' '0' '' '' '1' '000'
  'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', '000', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields={'000'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('1b52fa8c-d515-4d60-bf65-b892585dcdb5', '', 0, '', '', 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'000': b'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=', 'numChunks': 1, 'ownerID': None, 'encrypted': False, 'version': '', 'checksum': ''}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [6], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 6
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:6]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='1b52fa8c-d515-4d60-bf65-b892585dcdb5'", 'select': '[0:6]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='1b52fa8c-d515-4d60-bf65-b892585dcdb5'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:6]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='1b52fa8c-d515-4d60-bf65-b892585dcdb5'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [6], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 6
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:6]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='1b52fa8c-d515-4d60-bf65-b892585dcdb5'", 'select': '[0:6]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='1b52fa8c-d515-4d60-bf65-b892585dcdb5'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:6]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [6], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data: [('1b52fa8c-d515-4d60-bf65-b892585dcdb5', '', 0, '', '', 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [363 bytes]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [7], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset shape: (7,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape: (7,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection._sel: ((0,), (7,), (1,), (False,))
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] selection: start (0,) stop [7] step (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] start: [0]  stop: [7]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_stop: 7
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_mshape: (7,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:7:1]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] returning binary content, length: 1379
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] binary response, 1379 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] slices: [slice(0, 7, None)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new page_start: [7]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got arr: (7,), cleaning up shape!
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (1b52fa8c-d515-4d60-bf65-b892585dcdb5; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)
 ('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', 0)
 ('1b52fa8c-d515-4d60-bf65-b892585dcdb5', 0, 0, 0, 0, 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=')]; New items: [('1b52fa8c-d515-4d60-bf65-b892585dcdb5', '', 0, '', '', 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Wrote FileInfo(fileID='1b52fa8c-d515-4d60-bf65-b892585dcdb5', ownerID=None, encrypted=False, version='', previousVersion='', content=b"\x80\x05\x9...5dcdb5\x94ub.", checksum='', _numContentChunks=1) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490>.
[2021-12-21T04:33:21+0000] [Thread-8  ] [D] [toil.jobStores.aws.baseS3JobStore] Inlining content of 127 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: b'\x80\x05\x95t\x00\x00\x00\x00\x00\x00\x00\x8c\x08toil.job\x94\x8c\x07Promise\x94\x93\x94\x8c.s3hsds:us-east-1:/home/ed4bu/cath-paper-test-0\x94\x8c$1b52fa8c-d515-4d60-bf65-b892585dcdb5\x94\x86\x94R\x94.'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [7], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['de90cdf4-4065-5763-8ae2-b71758c6f931', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['de90cdf4-4065-5763-8ae2-b71758c6f931'
  '891f7db6-e4d9-4221-a58e-ab6cc4395f94' '0' '' '' '1' '000'
  'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', '000', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields={'000'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('de90cdf4-4065-5763-8ae2-b71758c6f931', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'000': b'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=', 'numChunks': 1, 'ownerID': '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 'encrypted': False, 'version': '', 'checksum': ''}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [7], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 7
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:7]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='de90cdf4-4065-5763-8ae2-b71758c6f931'", 'select': '[0:7]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='de90cdf4-4065-5763-8ae2-b71758c6f931'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:7]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='de90cdf4-4065-5763-8ae2-b71758c6f931'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [7], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 7
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:7]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='de90cdf4-4065-5763-8ae2-b71758c6f931'", 'select': '[0:7]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='de90cdf4-4065-5763-8ae2-b71758c6f931'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:7]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [7], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data: [('de90cdf4-4065-5763-8ae2-b71758c6f931', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [303 bytes]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [8], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset shape: (8,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape: (8,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection._sel: ((0,), (8,), (1,), (False,))
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] selection: start (0,) stop [8] step (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] start: [0]  stop: [8]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_stop: 8
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_mshape: (8,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:8:1]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] returning binary content, length: 1655
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] binary response, 1655 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] slices: [slice(0, 8, None)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new page_start: [8]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got arr: (8,), cleaning up shape!
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (de90cdf4-4065-5763-8ae2-b71758c6f931; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)
 ('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', 0)
 ('1b52fa8c-d515-4d60-bf65-b892585dcdb5', 0, 0, 0, 0, 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=')
 ('de90cdf4-4065-5763-8ae2-b71758c6f931', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=')]; New items: [('de90cdf4-4065-5763-8ae2-b71758c6f931', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Wrote FileInfo(fileID='de90cdf4-4065-5763-8ae2-b71758c6f931', ownerID='891f7db6-e4d9-4221-a58e-ab6cc4395f94', encrypted=False, version='', previousVersion='', content=b'\x80\x05\x9...x86\x94R\x94.', checksum='', _numContentChunks=1) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490> for shared file 'rootJobReturnValue'.
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Assigning ID to job 800f85f9-ae03-4450-ab3a-5349b389b5ec for '<no command>'
[2021-12-21T04:33:21+0000] [MainThread] [I] [toil.job] Saving graph of 1 jobs, 1 new
[2021-12-21T04:33:21+0000] [MainThread] [I] [toil.job] Processing job 'start_toil' 800f85f9-ae03-4450-ab3a-5349b389b5ec v0
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Starting sha1 checksum to match None
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Updating checksum with 1133 bytes
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Starting multipart upload
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Multipart upload started as 4f0e2937-a67d-41ed-955c-e3c18c814449
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Multipart upload visible as 4f0e2937-a67d-41ed-955c-e3c18c814449
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Uploading part 1 of 1133 bytes to 4f0e2937-a67d-41ed-955c-e3c18c814449
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Completed checksum with hash 4e56ec673838425e0b9d886dd628d58ec34baea2 vs. expected None
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Attempting to complete upload...
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Completed upload object of type <class 'dict'>: {'ResponseMetadata': {'RequestId': '16C2AAF928C8F365', 'HostId': '', 'HTTPStatusCode': 200, 'HTTPHeaders': {'accept-ranges': 'bytes', 'cache-control': 'no-cache', 'content-length': '445', 'content-security-policy': 'block-all-mixed-content', 'content-type': 'application/xml', 'etag': '"9f954d1897af92aa5f0f005174c2455a-1"', 'server': 'MinIO', 'strict-transport-security': 'max-age=31536000; includeSubDomains', 'vary': 'Origin, Accept-Encoding', 'x-accel-buffering': 'no', 'x-amz-request-id': '16C2AAF928C8F365', 'x-content-type-options': 'nosniff', 'x-xss-protection': '1; mode=block', 'x-amz-version-id': 'a5859510-3e20-4207-973e-384efabe4360', 'date': 'Tue, 21 Dec 2021 04:33:21 GMT'}, 'RetryAttempts': 0}, 'VersionId': 'a5859510-3e20-4207-973e-384efabe4360', 'Location': 'http://minio.minio-tenant-1.svc.cluster.local/home-ed4bu-cath-paper-test-0--files/9561e9e7-682b-40e7-9b4e-4dc62981eb99', 'Bucket': 'home-ed4bu-cath-paper-test-0--files', 'Key': '9561e9e7-682b-40e7-9b4e-4dc62981eb99', 'ETag': '"9f954d1897af92aa5f0f005174c2455a-1"'}
[2021-12-21T04:33:21+0000] [Thread-10 ] [D] [toil.jobStores.aws.baseS3JobStore] Completed upload with version a5859510-3e20-4207-973e-384efabe4360
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: None
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [8], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['9561e9e7-682b-40e7-9b4e-4dc62981eb99', '800f85f9-ae03-4450-ab3a-5349b389b5ec', 0, 'a5859510-3e20-4207-973e-384efabe4360', 'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2', 0, '000', '']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['9561e9e7-682b-40e7-9b4e-4dc62981eb99'
  '800f85f9-ae03-4450-ab3a-5349b389b5ec' '0'
  'a5859510-3e20-4207-973e-384efabe4360'
  'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2' '0' '000' '']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields=['000']
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('9561e9e7-682b-40e7-9b4e-4dc62981eb99', '800f85f9-ae03-4450-ab3a-5349b389b5ec', 0, 'a5859510-3e20-4207-973e-384efabe4360', 'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2', 0, '000', '')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'numChunks': 0, 'ownerID': '800f85f9-ae03-4450-ab3a-5349b389b5ec', 'encrypted': False, 'version': 'a5859510-3e20-4207-973e-384efabe4360', 'checksum': 'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [8], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 8
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:8]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='9561e9e7-682b-40e7-9b4e-4dc62981eb99'", 'select': '[0:8]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='9561e9e7-682b-40e7-9b4e-4dc62981eb99'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:8]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='9561e9e7-682b-40e7-9b4e-4dc62981eb99'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [8], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 8
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:8]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='9561e9e7-682b-40e7-9b4e-4dc62981eb99'", 'select': '[0:8]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='9561e9e7-682b-40e7-9b4e-4dc62981eb99'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:8]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [8], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data: [('9561e9e7-682b-40e7-9b4e-4dc62981eb99', '800f85f9-ae03-4450-ab3a-5349b389b5ec', 0, 'a5859510-3e20-4207-973e-384efabe4360', 'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2', 0, '000', '')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [212 bytes]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [9], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset shape: (9,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape: (9,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection._sel: ((0,), (9,), (1,), (False,))
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] selection: start (0,) stop [9] step (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] start: [0]  stop: [9]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_stop: 9
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_mshape: (9,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:9:1]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] returning binary content, length: 1840
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] binary response, 1840 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] slices: [slice(0, 9, None)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new page_start: [9]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got arr: (9,), cleaning up shape!
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (9561e9e7-682b-40e7-9b4e-4dc62981eb99; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)
 ('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', 0)
 ('1b52fa8c-d515-4d60-bf65-b892585dcdb5', 0, 0, 0, 0, 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=')
 ('de90cdf4-4065-5763-8ae2-b71758c6f931', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=')
 ('9561e9e7-682b-40e7-9b4e-4dc62981eb99', '800f85f9-ae03-4450-ab3a-5349b389b5ec', 0, 'a5859510-3e20-4207-973e-384efabe4360', 'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2', 0, '000', 0)]; New items: [('9561e9e7-682b-40e7-9b4e-4dc62981eb99', '800f85f9-ae03-4450-ab3a-5349b389b5ec', 0, 'a5859510-3e20-4207-973e-384efabe4360', 'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2', 0, '000', '')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Wrote FileInfo(fileID='9561e9e7-682b-40e7-9b4e-4dc62981eb99', ownerID='800f85f9-ae03-4450-ab3a-5349b389b5ec', encrypted=False, version='a5859510-3e20-4207-973e-384efabe4360', previousVersion='a5859510-3e20-4207-973e-384efabe4360', content=None, checksum='sha1$4e56ec67383...dd628d58ec34baea2', _numContentChunks=0) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490>.
[2021-12-21T04:33:21+0000] [MainThread] [I] [toil.job] CREATE JOB 800f85f9-ae03-4450-ab3a-5349b389b5ec
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.job] New job version: 'start_toil' 800f85f9-ae03-4450-ab3a-5349b389b5ec v1
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] jobs to add [('800f85f9-ae03-4450-ab3a-5349b389b5ec', '', 1, '000', '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')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(jobs)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(jobs)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-1763-4701d7-2c6b1d', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [0], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'job_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'overlargeID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('job_id', 'O'), ('overlargeID', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data: [('800f85f9-ae03-4450-ab3a-5349b389b5ec', '', 1, '000', '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')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-1763-4701d7-2c6b1d/value format: json [716 bytes]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [9], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] query 9 jobs for 'file_id==a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [9], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset shape: (9,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape: (9,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection._sel: ((0,), (9,), (1,), (False,))
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] selection: start (0,) stop [9] step (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] start: [0]  stop: [9]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_stop: 9
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_mshape: (9,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:9:1]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] returning binary content, length: 1840
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] binary response, 1840 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] slices: [slice(0, 9, None)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new page_start: [9]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got arr: (9,), cleaning up shape!
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all files: [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)
 ('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', 0)
 ('1b52fa8c-d515-4d60-bf65-b892585dcdb5', 0, 0, 0, 0, 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=')
 ('de90cdf4-4065-5763-8ae2-b71758c6f931', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=')
 ('9561e9e7-682b-40e7-9b4e-4dc62981eb99', '800f85f9-ae03-4450-ab3a-5349b389b5ec', 0, 'a5859510-3e20-4207-973e-384efabe4360', 'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2', 0, '000', 0)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [9], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 9
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:9]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa'", 'select': '[0:9]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:9]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [Thread-11 ] [D] [toil.jobStores.aws.baseS3JobStore] Inlining content of 36 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: b'800f85f9-ae03-4450-ab3a-5349b389b5ec'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [9], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items1=[['a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VTgwMGY4NWY5LWFlMDMtNDQ1MC1hYjNhLTUzNDliMzg5YjVlYw==']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items2=[['a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa'
  '891f7db6-e4d9-4221-a58e-ab6cc4395f94' '0' '' '' '1' '000'
  'VTgwMGY4NWY5LWFlMDMtNDQ1MC1hYjNhLTUzNDliMzg5YjVlYw==']]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', '000', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] chunk_fields={'000'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] items3=[('a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VTgwMGY4NWY5LWFlMDMtNDQ1MC1hYjNhLTUzNDliMzg5YjVlYw==')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] attributes={'000': b'VTgwMGY4NWY5LWFlMDMtNDQ1MC1hYjNhLTUzNDliMzg5YjVlYw==', 'numChunks': 1, 'ownerID': '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 'encrypted': False, 'version': '', 'checksum': ''}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [9], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 9
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:9]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa'", 'select': '[0:9]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:9]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [9], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] req - cursor: 0 page_size: 9
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] query param: [0:9]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] params: {'query': "file_id=='a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa'", 'select': '[0:9]'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params query:file_id=='a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa'
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:9]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [9], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] Table append
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] Using JSON since type is variable length
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] got numpy array
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rows shape: (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data dtype: (numpy.record, [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')])
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] writing json data, 1 elements
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] data: [('a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VTgwMGY4NWY5LWFlMDMtNDQ1MC1hYjNhLTUzNDliMzg5YjVlYw==')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [183 bytes]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] dataset shape: (10,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape: (10,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] selection._sel: ((0,), (10,), (1,), (False,))
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] selection: start (0,) stop [10] step (1,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] start: [0]  stop: [10]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_stop: 10
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] page_mshape: (10,)
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] GET params select:[0:10:1]
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] returning binary content, length: 1996
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] binary response, 1996 bytes
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] slices: [slice(0, 10, None)]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] new page_start: [10]
[2021-12-21T04:33:21+0000] [MainThread] [D] [root] done = True
[2021-12-21T04:33:21+0000] [MainThread] [I] [root] got arr: (10,), cleaning up shape!
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.hsdsJobStore] All files (a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa; False): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)
 ('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', 0)
 ('1b52fa8c-d515-4d60-bf65-b892585dcdb5', 0, 0, 0, 0, 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=')
 ('de90cdf4-4065-5763-8ae2-b71758c6f931', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=')
 ('9561e9e7-682b-40e7-9b4e-4dc62981eb99', '800f85f9-ae03-4450-ab3a-5349b389b5ec', 0, 'a5859510-3e20-4207-973e-384efabe4360', 'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2', 0, '000', 0)
 ('a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTgwMGY4NWY5LWFlMDMtNDQ1MC1hYjNhLTUzNDliMzg5YjVlYw==')]; New items: [('a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '', '', 1, '000', 'VTgwMGY4NWY5LWFlMDMtNDQ1MC1hYjNhLTUzNDliMzg5YjVlYw==')]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.jobStores.aws.baseS3JobStore] Wrote FileInfo(fileID='a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa', ownerID='891f7db6-e4d9-4221-a58e-ab6cc4395f94', encrypted=False, version='', previousVersion='', content=b'800f85f9-ae...-5349b389b5ec', checksum='', _numContentChunks=1) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490> for shared file 'rootJobStoreID'.
[2021-12-21T04:33:21+0000] [MainThread] [I] [toil] Running Toil version 5.6.0a1-458a26c04268e57ebace072e1d64b6a087e99e51-dirty on host molimic-data-generation-toil-m4fml.
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil] Configuration: {'workflowID': 'da3c1a5c-cafa-42e5-977f-1aa8d1592ab3', 'workflowAttemptNumber': 0, 'jobStore': 's3hsds:us-east-1:/home/ed4bu/cath-paper-test-0', 'logLevel': 'DEBUG', 'workDir': None, 'noStdOutErr': False, 'stats': True, 'clean': 'never', 'clusterStats': None, 'restart': False, 'batchSystem': 'kubernetes', 'disableAutoDeployment': False, 'maxLocalJobs': 2, 'manualMemArgs': False, 'coalesceStatusCalls': False, 'statePollingWait': None, 'parasolCommand': 'parasol', 'parasolMaxBatches': 10000, 'scale': 1.0, 'mesos_endpoint': '10.42.0.121:5050', 'allocate_mem': False, 'tes_endpoint': 'http://10.42.0.121:8000', 'tes_user': None, 'tes_password': None, 'tes_bearer_token': None, 'kubernetes_host_path': '/media/smb-rivanna/ed4bu/UrfoldServer/urfold_runs/cath_pipeline/h5_restructure/k8/', 'kubernetes_owner': 'default', 'runCwlInternalJobsOnWorkers': False, 'disableCaching': False, 'linkImports': True, 'moveExports': False, 'provisioner': None, 'nodeTypes': [], 'minNodes': None, 'maxNodes': [21], 'targetTime': 1, 'betaInertia': 0.1, 'scaleInterval': 60, 'preemptableCompensation': 0.0, 'nodeStorage': 50, 'nodeStorageOverrides': [], 'metrics': False, 'maxPreemptableServiceJobs': 9223372036854775807, 'maxServiceJobs': 9223372036854775807, 'deadlockWait': 60, 'deadlockCheckInterval': 30, 'defaultMemory': 2147483648, 'defaultCores': 1, 'defaultDisk': 2147483648, 'readGlobalFileMutableByDefault': False, 'defaultPreemptable': False, 'maxCores': 9223372036854775807, 'maxMemory': 9223372036854775807, 'maxDisk': 9223372036854775807, 'retryCount': 4, 'enableUnlimitedPreemptableRetries': False, 'doubleMem': False, 'maxJobDuration': 9223372036854775807, 'rescueJobsFrequency': 60, 'environment': {'TOIL_S3_HOST': 'minio.minio-tenant-1.svc.cluster.local', 'TOIL_S3_PORT': '80', 'TOIL_S3_USE_SSL': 'False', 'HS_ENDPOINT': 'http://hsds.default.svc.cluster.local:5101', 'HS_USERNAME': 'ed4bu@virginia.edu', 'HS_PASSWORD': '13e571b7f8e41419c63aa7a0f3a33e29'}, 'disableChaining': False, 'disableJobStoreChecksumVerification': False, 'maxLogFileSize': 64000, 'writeLogs': None, 'writeLogsGzip': None, 'writeLogsFromAllJobs': False, 'sseKey': None, 'servicePollingInterval': 60, 'useAsync': True, 'forceDockerAppliance': False, 'statusWait': 3600, 'disableProgress': False, 'debugWorker': False, 'disableWorkerOutputCapture': False, 'badWorker': 0.0, 'badWorkerFailInterval': 0.01, 'cwl': False, 'cleanWorkDir': 'always', 'toilS3Host': 'minio.minio-tenant-1.svc.cluster.local', 'toilS3Port': '80', 'toilS3UseSSL': 'False', 'hs_endpoint': 'http://hsds.default.svc.cluster.local:5101', 'hs_username': 'ed4bu@virginia.edu', 'hs_password': '13e571b7f8e41419c63aa7a0f3a33e29'}
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.common] ROOT JOB IS 800f85f9-ae03-4450-ab3a-5349b389b5ec
[2021-12-21T04:33:21+0000] [MainThread] [I] [toil.realtimeLogger] Starting real-time logging.
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.toilState] Found job to run: 800f85f9-ae03-4450-ab3a-5349b389b5ec, with command: True, with checkpoint: False, with services: False, with no next successors: False
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.bus] _buildToilState sent: JobUpdatedMessage(job_id='800f85f9-ae03-4450-ab3a-5349b389b5ec', result_status=0)
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.leader] Found 1 jobs to start and 0 jobs with successors to run
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.leader] Checked batch system has no running jobs and no updated jobs
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.serviceManager] Initializing service manager
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.leader] Built the jobs list, currently have 1 jobs to update and 0 jobs issued
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.leader] Updating status of job 'start_toil' 800f85f9-ae03-4450-ab3a-5349b389b5ec v1 with result status: 0
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [1], 'value': [['0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9']], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] got 1 rows
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] completed iteration, returning: 1 rows
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] Checking logs [('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9')] {'name': '0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'ownerID': 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 'encrypted': 'False', 'version': 0, 'checksum': None, 'numChunks': 1, 'chunks': None, '000': 'VXt9'}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.aws.utils] Creating binary from 1 chunks: [(0, 'VXt9')]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.aws.utils] Creating binary from b'VXt9'
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.aws.baseS3JobStore] Checking checsum for FileInfo(fileID='0e1e20d3-7689-4a71-9222-5e4d31fc8f88', ownerID='bfcf5286-4bc7-41ef-a85d-9ab415b69d53', encrypted=False, version='0', previousVersion='0', content=b'{}', checksum=None, _numContentChunks=1) bound to <toil.jobStores.hsdsJobStore.HSDSJobStore object at 0x7f0a27d2a490>: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.aws.baseS3JobStore] CONENT TO SAVE: b'{}'
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] items1=[['0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'e77fc3aa-d232-4255-ae04-f64ee8eb0bfa', 0, '0', '', 1, '000', 'VXt9']]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] items2=[['0e1e20d3-7689-4a71-9222-5e4d31fc8f88'
  'e77fc3aa-d232-4255-ae04-f64ee8eb0bfa' '0' '0' '' '1' '000' 'VXt9']]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] all_fields={'version', 'numChunks', 'ownerID', 'checksum', '000', 'encrypted'}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] named_fields={'version', 'numChunks', 'ownerID', 'checksum', 'encrypted'}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] chunk_fields={'000'}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] items3=[('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'e77fc3aa-d232-4255-ae04-f64ee8eb0bfa', 0, '0', '', 1, '000', 'VXt9')]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] attributes={'000': b'VXt9', 'numChunks': 1, 'ownerID': UUID('e77fc3aa-d232-4255-ae04-f64ee8eb0bfa'), 'encrypted': False, 'version': '0', 'checksum': ''}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] params: {'query': "file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'", 'select': '[0:10]'}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET params query:file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [1], 'value': [['0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9']], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] got 1 rows
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] completed iteration, returning: 1 rows
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] Query: file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [MainThread] [D] [toil.batchSystems.kubernetes] Launched job: default-toil-69a1cf6a-9ecf-4c5b-97f1-cd82ce0deee5-0
[2021-12-21T04:33:21+0000] [MainThread] [I] [toil.leader] Issued job 'start_toil' 800f85f9-ae03-4450-ab3a-5349b389b5ec v1 with job batch system ID: 0 and cores: 1, disk: 2.0 Gi, and memory: 2.0 Gi
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] params: {'query': "file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'", 'select': '[0:10]'}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET params query:file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [1], 'value': [['0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'bfcf5286-4bc7-41ef-a85d-9ab415b69d53', 0, 0, 0, 1, '000', 'VXt9']], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] got 1 rows
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] completed iteration, returning: 1 rows
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] PUT params: {'query': "file_id=='0e1e20d3-7689-4a71-9222-5e4d31fc8f88'", 'select': '[0:10]'}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] PUT: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value format: json [159 bytes]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] PUT returning: <Response [200]>
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] PUT rsp status_code: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] dataset.__getitem__
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] arg: Ellipsis type: <class 'ellipsis'>
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] new_dtype: [('file_id', 'O'), ('ownerID', 'O'), ('encrypted', 'i1'), ('version', 'O'), ('checksum', 'O'), ('numChunks', '<i4'), ('chunkName', 'O'), ('chunkValue', 'O')]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] selection_constructor
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] dataset shape: (10,)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] mshape: (10,)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] single_element: False
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] not settng nonstrict
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] selection._sel: ((0,), (10,), (1,), (False,))
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] selection: start (0,) stop [10] step (1,)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] split_dim: 0
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] chunks_per_page: 1
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] mshape_split_dim: 0
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] chunk size for split_dim: 8192
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] num_rows: 8192
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] paged read, chunks_per_page: 1 max_chunks: 1, num_pages: 1
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] page_number: 0
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] start: [0]  stop: [10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] page_stop: 10
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] page_mshape: (10,)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET params select:[0:10:1]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] returning binary content, length: 1997
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] binary response, 1997 bytes
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] slices: [slice(0, 10, None)]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] new page_start: [10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] done = True
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] got arr: (10,), cleaning up shape!
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [toil.jobStores.hsdsJobStore] All files (0e1e20d3-7689-4a71-9222-5e4d31fc8f88; True): [('a77581f6-ad82-5142-acb7-5a6b01eab3fb', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, '83c70c92-daf0-43c5-a779-759fdf793ada', 'sha1$ff8e450fda10698c36f2b287cc7714001fda9f68', 0, '000', 0)
 ('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'e77fc3aa-d232-4255-ae04-f64ee8eb0bfa', 0, '0', 0, 1, '000', 'VXt9')
 ('79bad63b-c331-5212-a0d2-d06a788c4b3c', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTE=')
 ('6681340b-9a30-5117-9d8c-f805c4e9ebd8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXEAAAAAAAAAjA10b2lsLnJlc291cmNllIwQTW9kdWxlRGVzY3JpcHRvcpSTlIwlL29wdC92ZW52L2xpYi9weXRob24zLjgvc2l0ZS1wYWNrYWdlc5SMG21vbG1pbWljLmdlbmVyYXRlX2RhdGEubWFpbpSIh5SBlC4=')
 ('74127688-75d6-5d33-a0c0-70a46674cec8', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'f0f80579-a3f3-44cc-8300-99044d375db5', 'sha1$4f8fcf9c6b400c9426039896ac00fc859f650cb1', 0, '000', 0)
 ('01c37f76-e635-5f9c-ad18-6ed1ae1b2e2a', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 'df154660-6a51-4726-b275-bd209607ccf6', 'sha1$825ad8f956d241a90e62b4eafe59256d6f52e9c0', 0, '000', 0)
 ('1b52fa8c-d515-4d60-bf65-b892585dcdb5', 0, 0, 0, 0, 1, '000', 'VYAFlbwAAAAAAAAAjAh0b2lsLmpvYpSMGlVuZnVsZmlsbGVkUHJvbWlzZVNlbnRpbmVslJOUKYGUfZQojBFmdWxmaWxsaW5nSm9iTmFtZZSMQSdzdGFydF90b2lsJyBUZW1wb3JhcnlJRChkNGU0MmIxMC1iNTI3LTQyNDYtYjM0Yy1lZWEzZmQ0NzE1YTcpIHYwlIwHZmlsZV9pZJSMJDFiNTJmYThjLWQ1MTUtNGQ2MC1iZjY1LWI4OTI1ODVkY2RiNZR1Yi4=')
 ('de90cdf4-4065-5763-8ae2-b71758c6f931', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VYAFlXQAAAAAAAAAjAh0b2lsLmpvYpSMB1Byb21pc2WUk5SMLnMzaHNkczp1cy1lYXN0LTE6L2hvbWUvZWQ0YnUvY2F0aC1wYXBlci10ZXN0LTCUjCQxYjUyZmE4Yy1kNTE1LTRkNjAtYmY2NS1iODkyNTg1ZGNkYjWUhpRSlC4=')
 ('9561e9e7-682b-40e7-9b4e-4dc62981eb99', '800f85f9-ae03-4450-ab3a-5349b389b5ec', 0, 'a5859510-3e20-4207-973e-384efabe4360', 'sha1$4e56ec673838425e0b9d886dd628d58ec34baea2', 0, '000', 0)
 ('a09ece78-f7f5-580e-bcf3-59b8e4b7c1fa', '891f7db6-e4d9-4221-a58e-ab6cc4395f94', 0, 0, 0, 1, '000', 'VTgwMGY4NWY5LWFlMDMtNDQ1MC1hYjNhLTUzNDliMzg5YjVlYw==')]; New items: [('0e1e20d3-7689-4a71-9222-5e4d31fc8f88', 'e77fc3aa-d232-4255-ae04-f64ee8eb0bfa', 0, '0', '', 1, '000', 'VXt9')]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:21+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:21+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:22+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:22+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:23+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:23+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:24+0000] [MainThread] [I] [toil.leader] 1 jobs are running, 0 jobs are issued and waiting to run
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:24+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:24+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:24+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:24+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:24+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:24+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:24+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:24+0000] [MainThread] [D] [toil-rt] Using alternate endpoint http://minio.minio-tenant-1.svc.cluster.local:80
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:24+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:24+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:24+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:25+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:25+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:26+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:26+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:27+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:27+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:28+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:28+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:29+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:29+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:30+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:30+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:31+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:31+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:32+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:32+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:33+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:33+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:34+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:34+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:35+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:35+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:36+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:36+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:37+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:37+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:38+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:38+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:39+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:39+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:39+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:39+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:39+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:39+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:39+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:39+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:40+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:40+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:41+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:41+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:42+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:42+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:43+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:43+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:44+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:44+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:45+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:45+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:46+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:46+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:47+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:47+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:48+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:48+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:49+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:49+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:50+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:50+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:51+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:51+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:52+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:52+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:53+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:53+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:54+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:54+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:54+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:54+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:54+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:54+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:54+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:54+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:55+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:55+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:56+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:56+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:57+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:57+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:58+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:58+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:33:59+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:33:59+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:00+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:00+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:01+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:01+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:02+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:02+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:03+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:03+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:04+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:04+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:05+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:05+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:06+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:06+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:07+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:07+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:08+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:08+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:08+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:08+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:08+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:08+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:08+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:08+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:08+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:09+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:09+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] got 0 rows
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] completed iteration, returning: 0 rows
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] group.__getitem__(files)
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] __get_link_json(files)
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] getObjByUuid(d-2e0c2ba1-ba058526-5da5-8a4220-725831)
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831 [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] rsp_json: {'id': 'd-2e0c2ba1-ba058526-5da5-8a4220-725831', 'root': 'g-2e0c2ba1-ba058526-a684-a32932-8d0dae', 'shape': {'class': 'H5S_SIMPLE', 'dims': [10], 'maxdims': [0]}, 'type': {'class': 'H5T_COMPOUND', 'fields': [{'name': 'file_id', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'ownerID', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'encrypted', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I8LE'}}, {'name': 'version', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'checksum', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'numChunks', 'type': {'class': 'H5T_INTEGER', 'base': 'H5T_STD_I32LE'}}, {'name': 'chunkName', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}, {'name': 'chunkValue', 'type': {'class': 'H5T_STRING', 'length': 'H5T_VARIABLE', 'charSet': 'H5T_CSET_UTF8', 'strPad': 'H5T_STR_NULLTERM'}}]}, 'creationProperties': {'filters': [{'class': 'H5Z_FILTER_DEFLATE', 'id': 1, 'level': 9, 'name': 'gzip'}]}, 'layout': {'class': 'H5D_CHUNKED', 'dims': [8192]}, 'attributeCount': 0, 'created': 1640061185, 'lastModified': 1640061185, 'domain': '/home/ed4bu/cath-paper-test-0-jobstore.h5', 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'attributes', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/attributes?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'data', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] req - cursor: 0 page_size: 10
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] query param: [0:10]
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] params: {'query': "ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'", 'select': '[0:10]'}
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] use basic auth with username: ed4bu@virginia.edu
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] GET: /datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5] bucket: None
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] GET: http://hsds.default.svc.cluster.local:5101/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value [/home/ed4bu/cath-paper-test-0-jobstore.h5]
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] GET params query:ownerID=='bfcf5286-4bc7-41ef-a85d-9ab415b69d53'
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] GET params select:[0:10]
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root] status: 200
[2021-12-21T04:34:10+0000] [Thread-14 ] [D] [root] rsp_json: {'index': [], 'value': [], 'hrefs': [{'rel': 'self', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831/value?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'root', 'href': 'http://hsds.hdf.test/groups/g-2e0c2ba1-ba058526-a684-a32932-8d0dae?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'home', 'href': 'http://hsds.hdf.test/?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}, {'rel': 'owner', 'href': 'http://hsds.hdf.test/datasets/d-2e0c2ba1-ba058526-5da5-8a4220-725831?domain=/home/ed4bu/cath-paper-test-0-jobstore.h5'}]}
[2021-12-21T04:34:10+0000] [Thread-14 ] [I] [root]