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eduardofox2 / MHL_Hungria_script
Created February 15, 2020 13:12
Supplementary script for a colleague to beautify some plots for a press release regarding the scientific output of Brasil and Hungary of the latest years. [IN PORTUGUESE]
##############Script escrito por Eduardo G P Fox em 14/02/2019 on RStudio Version 1.1.456 (OSX 10.13.6)###################
#Relativo a um artigo enfatizando o impacto da ciência húngara em diversas áreas, comparando ao Brasil e Singapura
#Publicado em: https://olivre.com.br/
#idealizado pelo Prof. Marcelo Hermes de Lima (UnB) e Eduardo G P Fox (aspirante ao Butantan)
#Por favor enviem comentarios sobre este script para meu site pessoal
####(https://ofoxofox.wixsite.com/research) e/ou Twitter @ofoxofox######
#Pacotes R utilizados
library(ggplot2)
@eduardofox2
eduardofox2 / Solenopsins_tryp_raw_data
Last active June 10, 2020 17:20
Raw data from a paper
#********Script written by Eduardo GP Fox with R version 3.5.1 (1st Version: 2018-07-02; Final Version 2020-03-12), RStudio v.1.1.456*********
#Includes Raw Data, Statistical Analyses, and Scripts behind plots for the paper
#Venom alkaloids against Chagas disease parasite: Search for effective therapies, by Costa Silva et al. 2020
#Importing packages for data formatting and preparing plots
require(ggplot2)
require(plyr)
require(reshape2)
require(drc)
require(tidyr)
@eduardofox2
eduardofox2 / Wu&al_D_citri_2017
Created January 21, 2020 18:20
R Script & Raw Data behind the published paper 'Host and environmental factors influencing ‘Candidatus Liberibacter asiaticus’ acquisition in Diaphorina citri' by Wu et al. 2017
#Plotting and Stats analysis followed by formatted raw data behind the scientific paper
#Host and environmental factors influencing ‘Candidatus Liberibacter asiaticus’ acquisition in Diaphorina citri
#Published in https://doi.org/10.1002/ps.5060
#Script produced by Eduardo G P Fox in 2016, P.R. China, Guangzhou
#Making sure workshop image is clear for data input and montage
rm(list = ls())
#Import Data from separate Raw_Data file
@eduardofox2
eduardofox2 / D_citri_tristeza_script
Last active April 20, 2020 23:14
R script containing raw data, analysis and plotting of Figures in the scientific publication 'The psyllid Diaphorina citri as a vector of Citrus tristeza virus' by Wu et. al [in press]
#Written by Eduardo G. P. Fox in Rio de Janeiro, Brazil, 2018.
#Data pertains infection rates and relative viral DNA titers in host plants and insect vector of CTV citrus 'tristeza' virus
#Useful functions applied
#List preserving object names, from https://stackoverflow.com/questions/16951080/can-lists-be-created-that-name-themselves-based-on-input-object-names, credit: @BenBolker
namedList <- function(...) {
L <- list(...)
snm <- sapply(substitute(list(...)),deparse)[-1]
if (is.null(nm <- names(L))) nm <- snm
if (any(nonames <- nm=="")) nm[nonames] <- snm[nonames]
@eduardofox2
eduardofox2 / Wu&al_D_citri_2018
Created January 21, 2020 17:55
Data Analysis & Plotting behind the scientific publication 'Host Plant-Mediated Interactions Between ‘Candidatus Liberibacter asiaticus’ and Its Vector Diaphorina citri Kuwayama (Hemiptera: Liviidae)'
##Script prepared by Eduardo G. P. Fox & Wu Fengnian for a paper analysing infection by a pest insect##############
#Written on 2016 in P.R. China, Guangzhou
#Host Plant-Mediated Interactions Between ‘Candidatus Liberibacter asiaticus’ and Its Vector Diaphorina citri Kuwayama (Hemiptera: Liviidae)
#Published at https://doi.org/10.1093/jee/toy182
#Order of itens presented according with appearance on published paper.
#(1)Developmental period of different life stages of Diaphorina citri fed on healthy and “Candidatus Liberibacter asiaticus”-infected hosts
@eduardofox2
eduardofox2 / gist:8a59213b89da8d64389cc857bdf19675
Created January 21, 2020 17:01
R Script containing raw [numeric] data, statistical analyses, and plotting codes behind the scientific paper 'Fire Ant Venom Alkaloids Inhibit Biofilm Formation'
#Data analysis and plotting of figures for the paper
#Fire Ant Venom Alkaloids Inhibit Biofilm Formation
#available from www.ncbi.nlm.nih.gov/pmc/articles/PMC6669452/ or https://dx.doi.org/10.3390%2Ftoxins11070420
#############################Written by Eduardo G. P. Fox in 2017, Guangzhou, P.R.China########################
#Based on data provided by coauthors, after long negotiation against resistance to scripting & transparency
#Please direct questions/comments to profile at www.researchgate.net/profile/Eduardo_Fox or @ofoxofox (Twitter)
#Loading useful functions
#New Function to regress log10
@eduardofox2
eduardofox2 / Imagem_MHL
Created January 21, 2020 16:52
Image prepared for a friend, concerning 3 university scores over the years [In Portuguese]
library(ggplot2)
library(magick)
library(reshape2)
#Imagens de icons obtidas a partir da Wikipedia, creditos das imagens abaixo
#Por Massachusetts Institute of Technology - http://www.mit.edu/, vectorized by Mysid, Domínio público, https://commons.wikimedia.org/w/index.php?curid=9464159
#Por José Wasth Rodrigues - http://www.scs.usp.br/identidadevisual/?page_id=10, Domínio público, https://commons.wikimedia.org/w/index.php?curid=60453569
#Por B1mbo (talk) Este desenho vetorial foi criado com Inkscape, CC BY-SA 4.0, https://commons.wikimedia.org/w/index.php?curid=8400886#Usando ícones de bandeiras baixadas no meu computador (Ajustar locale para o de quem usar este script)
MIT_icon<-image_read('C:\\Users\\Eduardo\\Downloads\\1920px-MIT_logo.svg.png')
USP_icon<-image_read('C:\\Users\\Eduardo\\Downloads\\USP.svg.png')
@eduardofox2
eduardofox2 / Script_MHLeFOX_China
Last active January 18, 2020 19:13
R Script for a news press release in Brazil commenting on recent scientific output, focusing here on China vs. Brazil while commenting on the US as an outgroup. [IN PORTUGUESE]
##############Script escrito por Eduardo G P Fox em 10/12/2019 on Ri 386 Version 3.6.2 (Windows 10)###################
#Relativo a um artigo enfatizando o impacto da ciência chinesa em diversas subáreas, comparando ao Brasil e EUA
#Publicado em: https://olivre.com.br/a-incrivel-revolucao-da-ciencia-da-china
#idealizado pelo Prof. Marcelo Hermes de Lima (UnB) e Eduardo G P Fox (aspirante ao Butantan)
#Por favor enviem comentarios sobre este script para meu site pessoal
####(https://ofoxofox.wixsite.com/research) e/ou Twitter @ofoxofox######
#Pacotes R utilizados
library(ggplot2)
@eduardofox2
eduardofox2 / Script_Quimica_MHL
Last active January 18, 2020 19:35
R code prepared for a colleague to increase usability & transparency of scientometrics data regarding Chemistry in Brazil, as published in a news press commentary piece [IN PORTUGUESE]
##############Script escrito por Eduardo G P Fox em 30/12/2019 on Rstudio Version 1.1.456#########################
####Mozilla/5.0 (Macintosh; Intel Mac OS X 10_13_6)#######
#Relativo a um artigo enfatizando o impacto da ciência brasileira na Química e subáreas
#Publicado em: https://olivre.com.br/pesquisa-em-quimica-no-brasil-muita-quantidade-pouco-impacto
#idealizado pelos Profs. Marcelo Hermes de Lima (Bioquimica, UnB) e Marcos Eberlin (Quimica, USP)
#Por favor enviem comentarios sobre este script para meu site pessoal
####(https://ofoxofox.wixsite.com/research) e/ou Twitter @ofoxofox######
#Pacotes R utilizados
@eduardofox2
eduardofox2 / Script_astronomia_MHL2.txt
Created November 17, 2019 16:53
R code prepared for improving graphs & transparency of a colleague's scientometrics analysis, published at https://olivre.com.br/cientometria-da-astronomia [IN PORTUGUESE, by Marcelo Hermes de Lima]
##############Script R escrito por Eduardo G P Fox em 12/11/2019#########################
#Relativo a um artigo enfatizando o impacto da ciencia nacional em Astrologia, relativo a outros países #relacionados
#Publicado em: https://olivre.com.br/cientometria-da-astronomia
#idealizado pelos Profs. Marcelo Hermes de Lima (UnB) e Carlos Alberto de Oliveira Torres
#Por favor enviem comentarios sobre este script para meu site pessoal
####(https://ofoxofox.wixsite.com/research) e/ou Twitter @ofoxofox######
#Pacotes R utilizados
library(ggplot2)
library(stringr)