Writing a CiteULike plugin for FigShare...

datadryad.output.txt

$ ./driver.tcl parse http://www.datadryad.org/resource/doi:10.5061/dryad.fr43s
parsing http://www.datadryad.org/resource/doi:10.5061/dryad.fr43s

keywords -> Ecological Genetics; Fish; Genomics/Proteomics; Life History Evolution; Empirical Population Genetics; Wildlife Management
linkouts -> {DRYAD {} 10.5061/dryad.fr43s {} {}} {DOI {} 10.5061/dryad.fr43s {} {}}
year -> 2014
type -> GEN
plugin_version -> 1
publisher -> Dryad Digital Repository
day -> 10
title -> Data from: Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar)
status -> ok
abstract -> Delaying sexual maturation can lead to larger body size and higher reproductive success, but carries an increased risk of death before reproducing. Classical life history theory predicts that trade-offs between reproductive success and survival should lead to the evolution of an optimal strategy in a given population. However, variation in mating strategies generally persists, and in general, there remains a poor understanding of genetic and physiological mechanisms underlying this variation. One extreme case of this is in the Atlantic salmon (Salmo salar), which can show variation in the age at which they return from their marine migration to spawn (i.e. their “sea age”). This results in large size differences between strategies, with direct implications for individual fitness. Here, we used an Illumina Infinium SNP-array to identify regions of the genome associated with variation in sea age in a large population of Atlantic salmon in Northern Europe, implementing individual-based genome-wide association studies (GWAS) and population-based FST outlier analyses. We identified several regions of the genome which vary in association with phenotype and/or selection between sea ages, with nearby genes having functions related to muscle development, metabolism, immune response and mate choice. In addition, we found that individuals of different sea ages belong to different, yet sympatric populations in this system, indicating that reproductive isolation may be driven by divergence between stable strategies. Overall, this study demonstrates how genome-wide methodologies can be integrated with samples collected from wild, structured populations to understand their ecology and evolution in a natural context.
month -> 06
authors -> {Johnston Susan SE {Johnston, Susan E.}} {Orell Panu P {Orell, Panu}} {Pritchard Victoria VL {Pritchard, Victoria L.}} {Kent Matthew MP {Kent, Matthew P.}} {Lien Sigbjørn S {Lien, Sigbjørn}} {Niemelä Eero E {Niemelä, Eero}} {Erkinaro Jaakko J {Erkinaro, Jaakko}} {Primmer Craig C {Primmer, Craig}}
plugin -> datadryad

figshare.output.txt

$ ./driver.tcl parse http://figshare.com/articles/Summary_of_the_Spring_2014_NSC_Database_Survey/1195888
parsing http://figshare.com/articles/Summary_of_the_Spring_2014_NSC_Database_Survey/1195888

year -> 2014
linkouts -> {DOI {} 10.6084/m9.figshare.1195888 {} {}} {FIGSHR {} Summary_of_the_Spring_2014_NSC_Database_Survey/1195888 {} {}}
type -> GEN
plugin_version -> 1
publisher -> figshare
day -> 07
title -> Summary of the Spring 2014 NSC Database Survey
status -> ok
abstract -> The NanoSafety Cluster Database working group organized in Spring 2014 a survey for the community to summarize the current state of databases and including questions of a more technical nature. This survey is a first in a biannual continuous effort and attempt to collect, organise and share up-to-date information about NanoSafety related databases worldwide. For example, it included questions about application programming interfaces, database schema, supported input and output formats, etc. This document summarizes the responses we received before August 2014.
month -> 10
authors -> {Mustad Axel AP {Axel P. Mustad}} {Smeets Bart B {Bart Smeets}} {Jeliazkova Nina N {Nina Jeliazkova}} {Jeliazkov Vedrin V {Vedrin Jeliazkov}} {Willighagen Egon E {Egon Willighagen}}
plugin -> figshare

zenodo.output.txt

$ ./driver.tcl parse https://zenodo.org/record/12839
parsing https://zenodo.org/record/12839

year -> 2014
linkouts -> {ZENODO {} 12839 {} {}} {DOI {} 10.5281/zenodo.12839 {} {}}
type -> GEN
plugin_version -> 1
publisher -> ZENODO
day -> 24
title -> BridgeDb: BridgeDb v2.0.0 released
status -> ok
month -> 11
authors -> {Brenninkmeijer Christian CY {Christian Y. Brenninkmeijer}} {Summer-Kutmon Martina M {Martina Summer-Kutmon}} {Willighagen Egon E {Egon Willighagen}} {Pico Alexander A {Alexander Pico}}
plugin -> zenodo