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egonw/Add Phenyl

Created November 20, 2008 17:40
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Add Phenyl
# just illustrative, and only works on a file only I have, but you get the idea
ui.open("/PeptideMimetics/10.cml")
oxygen = jcp.getModel().getAtomContainer().getAtom(11)
jcp.addAtom("C", oxygen)
newCarbon = jcp.getModel().getAtomContainer().getAtom(12)
jcp.addPhenyl(newCarbon)
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