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eharkins/tree_transform.json

Created February 16, 2019 00:45
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tree_transform.json
{
"$schema": "https://vega.github.io/schema/vega/v4.json",
"width": 1000,
"height": 1000,
"padding": 5,
"signals": [
{ "name": "sortby", "value": "none",
"bind": {"input": "select", "options": ["none", "data.lbi", "data.lbr"]} },
{ "name": "method", "value": "cluster",
"bind": {"input": "select", "options": ["tidy", "cluster"]} },
{ "name": "separation", "value": false, "bind": {"input": "checkbox"} }
],
"data": [
{
"name": "input",
"values": [
{
"distance": 0.09139,
"lbr": 0.0,
"nt_seq": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGCTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGCGTGGGTTAGCCGTATTAAGAGTTACAGTGAAGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTTTTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACCATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
"parent": "26",
"timepoint_multiplicities": [],
"multiplicity": 1,
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"timepoint": null,
"label": "V18_M02331_50_000000000-AE5LT_1_2107_11236_22995_5_2",
"aa_seq": "EVQLVESGGGLVQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLAWVSRIKSYSEGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYHFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 0.02345,
"affinity": null,
"lbi": 0.0010000000000654327,
"height": 1,
"type": "leaf",
"id": "V18_M02331_50_000000000-AE5LT_1_2107_11236_22995_5_2"
},
{
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"nt_seq": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTTTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAGGGGGCTGGAGTGGATTAGCCGTATTAAGAGTTTCAGTGAAGGTGGGACAACAGACTACGCTGCACTCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
"parent": "26",
"timepoint_multiplicities": [],
"multiplicity": 1,
"cluster_multiplicity": 1,
"timepoint": null,
"label": "V18_M02331_50_000000000-AE5LT_1_2104_23872_7848_5_1",
"aa_seq": "EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYSMNWVRQAPGRGLEWISRIKSFSEGGTTDYAALVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 0.01785,
"affinity": null,
"lbi": 0.001000000017694728,
"height": 2,
"type": "leaf",
"id": "V18_M02331_50_000000000-AE5LT_1_2104_23872_7848_5_1"
},
{
"distance": 0.06794,
"lbr": 0.31639400756536834,
"nt_seq": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTaCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAgCAACtaCATGAgCTGGGTCCGCCAGGCTCCAGGGAgGGGGCTGGAGTGGaTTAGCCGTATTAAGAGTTTCAGTGAAGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
"parent": "24",
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"multiplicity": null,
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"label": "26",
"aa_seq": "EVQLVESGGGLVQPGGSLRLSCAASGFTFSSNYMSWVRQAPGRGLEWISRIKSFSEGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
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"height": 1.5,
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"id": "26"
},
{
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"nt_seq": "NAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGTAGCCTCTGGATTCACCTTCAGTGACAACGAGATGATTTGGGTCCGCCAGGCTCCAGGGAGGGGGCTGGAATGGATTAGCCGTATTAAGCGTTTCGGTGAAGGTGGGACAACAGACTACGCTGCACTCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAATACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
"parent": "21",
"timepoint_multiplicities": [],
"multiplicity": 1,
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"timepoint": null,
"label": "V18_M02331_50_000000000-AE5LT_1_2102_20662_20072_5_1",
"aa_seq": "XVQLVESGGGLVKPGGSLRLSCVASGFTFSDNEMIWVRQAPGRGLEWISRIKRFGEGGTTDYAALVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 0.01684,
"affinity": null,
"lbi": 0.0010000000987583784,
"height": 3,
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"id": "V18_M02331_50_000000000-AE5LT_1_2102_20662_20072_5_1"
},
{
"distance": 0.11298,
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"nt_seq": "GACGTGCAGGTGTGGGCGTCTGTGGGTGGCTCTGTCCAGCCTGGGAGTTCTCTTAGACTCTCCTCTGCAGCCTCTGGATTCACCTTCAGTGACAACGAGATGATTTGGGTCCGCCAGGCTCCAGGGAGGGCGCTGGAGTGGAGTAGTCGTATTAAGAGTTTCAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTAACCGTCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACAACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
"parent": "29",
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"multiplicity": 1,
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"timepoint": null,
"label": "V18_M02331_50_000000000-AE5LT_1_1102_10571_11452_5_2",
"aa_seq": "DVQVWASVGGSVQPGSSLRLSSAASGFTFSDNEMIWVRQAPGRALEWSSRIKSFSDGGTTDYAAPVKGRLTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYNRYLTDVWGKGTTVTVSS",
"length": 0.04291,
"affinity": null,
"lbi": 0.001,
"height": 4,
"type": "leaf",
"id": "V18_M02331_50_000000000-AE5LT_1_1102_10571_11452_5_2"
},
{
"distance": 0.08639,
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"nt_seq": "NNNGTTCAGCTGGTGGAGTCTGGGGGAGTCGTGGTACAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACAACGAGATGATTTGGGTCCGCCGGGCTCCAGGGCGGGGGCTGGAGTGGCTTAGTCGTATTAAGAGTTTCAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
"parent": "29",
"timepoint_multiplicities": [],
"multiplicity": 1,
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"timepoint": null,
"label": "V18_M02331_50_000000000-AE5LT_1_2110_12127_9090_5_1",
"aa_seq": "XVQLVESGGVVVQPGGSLRLSCAASGFTFSDNEMIWVRRAPGRGLEWLSRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 0.01632,
"affinity": null,
"lbi": 0.0010000000923449293,
"height": 5,
"type": "leaf",
"id": "V18_M02331_50_000000000-AE5LT_1_2110_12127_9090_5_1"
},
{
"distance": 0.07007,
"lbr": 0.1748590843534337,
"nt_seq": "GAgGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTccAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACAACGAGATGATTTGGGTCCGCCAGGCTCCAGGGAGGGGGCTGGAGTGGATTAGTCGTATTAAGAGTTTCAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
"parent": "10",
"timepoint_multiplicities": [],
"multiplicity": null,
"cluster_multiplicity": null,
"timepoint": null,
"label": "29",
"aa_seq": "EVQLVESGGGLVQPGGSLRLSCAASGFTFSDNEMIWVRQAPGRGLEWISRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 0.00218,
"affinity": null,
"lbi": 0.003130053399208486,
"height": 4.5,
"type": "node",
"id": "29"
},
{
"distance": 0.09677,
"lbr": 0.0,
"nt_seq": "GAAGTGCAGTTGGTGGAGTCTGCGGGAGGTCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACAACGAGCTGATTTGGATCCGCCAGGCTCCAGGGAGGGGGCTGGAGTGGATTGGTCGTATTAAGAGTTTCAGTGATGGTGGGACAACAGACTACGCTGCACCCATGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGGCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
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"label": "V18_M02331_50_000000000-AE5LT_1_1110_26780_10494_5_2",
"aa_seq": "EVQLVESAGGLVKPGGSLRLSCAASGFTFSDNELIWIRQAPGRGLEWIGRIKSFSDGGTTDYAAPMKGRFTISRDDSKNTLFLQMNSLKIEDTGVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 0.02888,
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"lbi": 0.0010000000000003626,
"height": 6,
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"id": "V18_M02331_50_000000000-AE5LT_1_1110_26780_10494_5_2"
},
{
"distance": 0.06789,
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"nt_seq": "GAgGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTcAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACAACGAGATGATTTGGGTCCGCCAGGCTCCAGGGAGGGGGCTGGAGTGGATTAGTCGTATTAAGAGTTTCAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
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"label": "10",
"aa_seq": "EVQLVESGGGLVKPGGSLRLSCAASGFTFSDNEMIWVRQAPGRGLEWISRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
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"lbi": 0.003263534443685281,
"height": 5.25,
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},
{
"distance": 0.06533,
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"nt_seq": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTcAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACAACGAGATGATTTGGGTCCGCCAGGCTCCAGGGAGGGGGCTGGAGTGGATTAGCCGTATTAAGAGTTTCAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
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"aa_seq": "EVQLVESGGGLVKPGGSLRLSCAASGFTFSDNEMIWVRQAPGRGLEWISRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 6e-05,
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"height": 4.125,
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"id": "21"
},
{
"distance": 0.10868,
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"nt_seq": "GAGGCGCAACTGGTGGAGACTGGGGGAGGCTTGGTGACGTCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACCATCAGCGACAACGAGAAGATCAGGGGCCGCAAGGATACAGGGAGGGGGCTGGAGTGGAGCAGCCGTATTAAGAGTTTCAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGAGTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
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"label": "V18_M02331_50_000000000-AE5LT_1_2103_21184_3878_5_1",
"aa_seq": "EAQLVETGGGLVTSGGSLRLSCAASGFTISDNEKIRGRKDTGRGLEWSSRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYEFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 0.03678,
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"id": "V18_M02331_50_000000000-AE5LT_1_2103_21184_3878_5_1"
},
{
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"nt_seq": "GAGGCGCAACTGGTGGAGTCTGGGGGAGGCTTGGTGAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACAACGAGATGATTTGGGTCCGCCAGGCTCCAGGGAGGGGGCTGGAGTGGATTAGCCGTATTAAGAGTTTCAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTATTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGGGTGCAGACATACGATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCGCGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
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"label": "V18_M02331_50_000000000-AE5LT_1_1109_10481_20852_5_1",
"aa_seq": "EAQLVESGGGLVKPGGSLRLSCAASGFTFSDNEMIWVRQAPGRGLEWISRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLADVWGKGTTVTVSS",
"length": 0.00224,
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"height": 8,
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"id": "V18_M02331_50_000000000-AE5LT_1_1109_10481_20852_5_1"
},
{
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"nt_seq": "GAGGAGCAACTGGTGGAGTCTGGGGAAGGCCCGGTGAAGCCTGGGGGGTACCTTAGACTCTCCTGTGCAGCATCTGGATTCACCTTCAGTGACAACGAGAAGATCTGGGTCCGCCAGGCGCCAGGGAGGGGGCTGGAATGGGGTAGTCGTATTAAGAGTTACAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTTTTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGCGTGCAGACATACTATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
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"aa_seq": "EEQLVESGEGPVKPGGYLRLSCAASGFTFSDNEKIWVRQAPGRGLEWGSRIKSYSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYYFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
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"id": "V18_M02331_50_000000000-AE5LT_1_2102_21402_6239_5_1"
},
{
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"nt_seq": "GAGGCGCAACTGGTGGAGTCTGGGGGAGGCCTAGTGAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACAACGAGATGATCTGGGTCCGCCAGGCTCCAGGGAGGGGGCTGGAGTGGGTTAGTCGTATTAAGAGTTACAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTTTTTCTGCAAATGAACAGCCTGAAAATCGAGGATACAGCCGTGTATTATTGTAATACAGGCGTGCAGACATACTATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
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"label": "V18_M02331_50_000000000-AE5LT_1_1114_19267_12804_5_1",
"aa_seq": "EAQLVESGGGLVKPGGSLRLSCAASGFTFSDNEMIWVRQAPGRGLEWVSRIKSYSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYYFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 0.0045,
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"height": 10,
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"id": "V18_M02331_50_000000000-AE5LT_1_1114_19267_12804_5_1"
},
{
"distance": 0.12398999999999999,
"lbr": 0.0,
"nt_seq": "GAGGCGCAACTGGTGTACCTCTGGGTATGCCTGTCGATGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGCTTCACCTTCAGTGACAACGAGATGATCTGGGTCCGCCAGGCTCCAGGGAGGGGGCTGGAGTGGGTTAGTCGTATTAAGAGTTACAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTTTTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGCGTGCAGACATACTATTTTGGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGACTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
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"multiplicity": 1,
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"timepoint": null,
"label": "V18_M02331_50_000000000-AE5LT_1_1107_7396_12748_5_2",
"aa_seq": "EAQLVYLWVCLSMPGGSLRLSCAASGFTFSDNEMIWVRQAPGRGLEWVSRIKSYSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYYFGSDDYGQDYDRYLTDDWGKGTTVTVSS",
"length": 0.03084,
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"lbi": 0.0010000000000000443,
"height": 11,
"type": "leaf",
"id": "V18_M02331_50_000000000-AE5LT_1_1107_7396_12748_5_2"
},
{
"distance": 0.13031,
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"nt_seq": "GAGGCGCAACTGGTGGAGTCTGTGTGCGTCCTGTTCAATCCTGCTGGGTCCCTTATCCTCTCCTGTGCCGCCTCTGGTTTCACCTTCAGTGACAACGAGATGATCTGGGTCCGCCAGGCTCCAGTGAGGCGGCTGGAGTGGGTTAGTCGTATTAAGAGTTACAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACACTTTTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGCGTGCAGACATACTATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
"parent": "35",
"timepoint_multiplicities": [],
"multiplicity": 1,
"cluster_multiplicity": 1,
"timepoint": null,
"label": "V18_M02331_50_000000000-AE5LT_1_2115_17904_7991_5_1",
"aa_seq": "EAQLVESVCVLFNPAGSLILSCAASGFTFSDNEMIWVRQAPVRRLEWVSRIKSYSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYYFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
"length": 0.03716,
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"lbi": 0.001,
"height": 12,
"type": "leaf",
"id": "V18_M02331_50_000000000-AE5LT_1_2115_17904_7991_5_1"
},
{
"distance": 0.09315000000000001,
"lbr": 0.2373760999590176,
"nt_seq": "GAGGCGCAACTGGTGGAGTCTGGGGGAGGCCTGtTGAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGaTTCACCTTCAGTGACAACGAGATGATCTGGGTCCGCCAGGCTCCAGGGAGGGGGCTGGAGTGGGTTAGTCGTATTAAGAGTTACAGTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCGTCTCAAGAGATGATTCAAAAAACACCCTTTTTCTGCAAATGAACAGCCTGAAAATCGAGGACACAGCCGTGTATTATTGTAATACAGGCGTGCAGACATACTATTTTTGGAGTGACGATTATGGCCAAGACTACGACCGCTACCTCACGGACGTCTGGGGCAAGGGGACCACGGTCACCGTCTCCTCA",
"cluster_timepoint_multiplicities": [],
"parent": "14",
"timepoint_multiplicities": [],
"multiplicity": null,
"cluster_multiplicity": null,
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{
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{
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"aa_seq": "EAQLVESGGGLVKPGGSLRLSCAASGFTFSDNEMIWVRQAPGRGLEWVSRIKSYSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
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"aa_seq": "EAQLVESGGGLVKPGGSLRLSCAASGFTFSDNEMIWVRQAPGRGLEWISRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
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"aa_seq": "EAQLVESGGGSGKAEGSLCPSCAASGFTFSDNEMIWVRQAPGTGREWTSRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLILQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
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{
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{
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"aa_seq": "VAQLVESGGGSVKPGGSLRLACSSSGFTFSADELLWFLEAPARGLEWISRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLCLKMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
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{
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{
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"aa_seq": "EVQLVESGGGLVKPGGSLRLSCAASGFTFSDN*MSWVRQAPGRGLEWISRIKSFSDGGTTDYAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYDFWSDDYGQDYDRYLTDVWGKGTTVTVSS",
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"aa_seq": "EVQLVESGGGLVKPGGSLRLSCAVSGFTISDAWMSWVRQAPGKGLEWVGRIKSFSDGGTTDHAAPVKGRFTVSRDDSKNTLFLQMNSLKIEDTAVYYCNTGVQTYEFWSGDYGQDYDRYLTDVWGKGTTVTVSS",
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{
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"aa_seq": "EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCNTGVQTYDFWSDDYGDDYDRYLTDVWGKGTTVTVSS",
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}
]
},
{
"name": "tree",
"source": "input",
"transform": [
{
"type": "stratify",
"key": "id",
"parentKey": "parent"
},
{
"type": "tree",
"method": {"signal": "method"},
"separation": {"signal": "separation"},
"sort": {"field": {"signal": "sortby"}, "order": "ascending"},
"size": [{"signal": "width"}, {"signal": "height"}],
"as": ["y", "x_tree", "depth", "children"]
},
{"expr": "scale(\"time\", datum.distance)", "type": "formula", "as": "x"}
]
},
{
"name": "links",
"source": "tree",
"transform": [
{ "type": "treelinks" },
{ "type": "linkpath", "shape": "orthogonal", "orient": "horizontal" }
]
}
],
"scales": [
{
"name": "color",
"type": "ordinal",
"range": {"scheme": "category20"}
},
{
"name": "time",
"type": "linear",
"domain": {"data": "input", "field": "distance"},
"range": [0,{"signal": "width"}]
}
],
"marks": [
{
"type": "path",
"from": {"data": "links"},
"encode": {
"enter": {
"stroke": {"value": "#ccc"}
},
"update": {
"path": {"field": "path"}
}
}
},
{
"type": "symbol",
"from": {"data": "tree"},
"encode": {
"enter": {
"fill": {"scale": "color", "field": "id"},
"stroke": {"value": "white"},
"size": {"value": 100}
},
"update": {
"x": {"field": "x"},
"y": {"field": "y"}
}
}
}
]
}
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