Eileen Li eileenforwhat
eileenforwhat
/ setups.py
Created
April 29, 2016 00:13
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| def _setup_extr_quant_review(self): | |
| self.extr_review = create_process_definition( | |
| ips.POST_EXTR_QUANT_REVIEW) | |
| self.extrs = [ | |
| 'EXTR_1', | |
| ] | |
| self.add_consumables( | |
| ips.QUANTED_EXTR_PLATES, |
eileenforwhat
/ teests.py
Created
April 28, 2016 23:38
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| @mock_autoapp_server(settings.WETLAB_OPS_URL) | |
| def test_extr_quant_review_no_rewinds(self, mock_wetlab_ops): | |
| mock_wetlab_ops.register_post('/rest/labware_op/', {'uuid': None}) | |
| extr_review = create_process_definition( | |
| ips.POST_EXTR_QUANT_REVIEW) | |
| extrs = [ | |
| 'EXTR_1', | |
| ] |
eileenforwhat
/ gdna data processing output
Last active
April 5, 2016 21:48
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| "standards": { | |
| "D12": { | |
| "concentration_expected": 200, | |
| "fluor": 28479, | |
| "concentration": 213.24527824730268 | |
| }, | |
| "H02": { | |
| "concentration_expected": 100, | |
| "fluor": 12931, | |
| "concentration": 96.67480511716742 |
eileenforwhat
/ processdata
Last active
March 1, 2016 18:18
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| { | |
| "qc_data": { | |
| "r_squared": 0.998, | |
| "standards": { | |
| "D02": { | |
| "concentration_expected": 3.6, | |
| "fluor": 9205, | |
| "concentration": 3.6459860268209003 | |
| }, | |
| "D01": { |
eileenforwhat
/ output
Created
February 23, 2016 08:42
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| Pasting code; enter '--' alone on the line to stop or use Ctrl-D. | |
| :from predicate.debug import patch_with_orm_eval | |
| :from predicate.predicate import get_values_list | |
| :print l.pools.values_list('consumableinpool__left') | |
| :print get_values_list(l, 'pools__consumableinpool__left') | |
| :print P(**l.current_pool_filter).filter(l.pools.all()) | |
| :with patch_with_orm_eval(): | |
| : print P(**l.current_pool_filter).filter(l.pools.all()) | |
| : | |
| :-- |
eileenforwhat
/ profile
Created
February 17, 2016 01:06
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| 331835 function calls (329253 primitive calls) in 6.968 seconds | |
| Ordered by: cumulative time, function name | |
| ncalls tottime percall cumtime percall filename:lineno(function) | |
| 1 0.000 0.000 6.969 6.969 <ipython-input-1-65eb18958b15>:12(profile_samples_rewind_options) | |
| 1 0.000 0.000 6.969 6.969 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/test.py:165(post) | |
| 1 0.000 0.000 6.969 6.969 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/test.py:88(post) | |
| 1 0.000 0.000 6.969 6.969 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/compat.py:206(generic) | |
| 1 0.000 0.000 6.968 6.968 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/test.py:154(request) |
eileenforwhat
/ speedup
Created
February 16, 2016 17:07
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| 564392 function calls (561010 primitive calls) in 19.461 seconds | |
| Ordered by: cumulative time, function name | |
| ncalls tottime percall cumtime percall filename:lineno(function) | |
| 1 0.000 0.000 19.466 19.466 <ipython-input-1-6a7c865ae4fd>:21(profile_rewind_batch_samples) | |
| 1 0.000 0.000 19.466 19.466 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/test.py:165(post) | |
| 1 0.000 0.000 19.466 19.466 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/test.py:88(post) | |
| 1 0.000 0.000 19.465 19.465 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/compat.py:206(generic) | |
| 1 0.000 0.000 19.465 19.465 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/test.py:154(request) |
eileenforwhat
/ profile
Created
February 16, 2016 06:03
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| 6762194 function calls (6718103 primitive calls) in 126.013 seconds | |
| Ordered by: cumulative time, function name | |
| ncalls tottime percall cumtime percall filename:lineno(function) | |
| 1 0.001 0.001 126.071 126.071 <ipython-input-1-6a7c865ae4fd>:21(profile_rewind_batch_samples) | |
| 1 0.000 0.000 126.070 126.070 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/test.py:165(post) | |
| 1 0.000 0.000 126.070 126.070 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/test.py:88(post) | |
| 1 0.000 0.000 126.070 126.070 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/compat.py:206(generic) | |
| 1 0.000 0.000 126.070 126.070 /Users/eileen/testv-nfs/auto_pipeline/venv/lib/python2.7/site-packages/rest_framework/test.py:154(request) |
eileenforwhat
/ output2
Created
February 11, 2016 01:26
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| { | |
| u 'qc_data': { | |
| u 'unknowns': { | |
| u 'H09': [{ | |
| u 'fluor': 57459.0, | |
| u 'concentration': 656.9792311737676, | |
| u 'source_coor': [16, 17], | |
| u 'dest_coor': [8, 9] | |
| }, { | |
| u 'fluor': 55717.0, |
eileenforwhat
/ output.json
Created
February 10, 2016 01:50
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| { | |
| u 'qc_data': { | |
| u 'unknowns': { | |
| u 'H09': [{ | |
| u 'fluor': 38069.0, | |
| u 'concentration': -627.6861089327767, | |
| u 'source_coor': [16, 17], | |
| u 'dest_coor': [8, 9] | |
| }, { |