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inputFileName= 'wt chm'; | |
dtin=importdata(strcat(inputFileName,'.csv')); | |
dBinMin=0; | |
dBinMax=6; | |
dBin = 0.1; | |
%first values then weights | |
dt=horzcat(dtin(:,2),dtin(:,1)); |
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// Providing an image and polyline, macro illustrates | |
// (creates a stack with animation) | |
// "Straighten" ROI function of ImageJ | |
// 2021.01.28 Eugene Katrukha / katpyxa at gmail dot com | |
if (nImages<1) | |
{ | |
exit("This macro needs an input image. Open something"); | |
} | |
if(selectionType()!=6) |
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import sys | |
from math import pi | |
from math import sqrt | |
from random import shuffle | |
from java.awt import Color | |
from ij import WindowManager | |
from ij.measure import ResultsTable | |
from ij.plugin.frame import RoiManager |
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//get folder with files | |
input = getDirectory("Input directory"); | |
//!!!define suffix of files here | |
suffix = ".tif"; | |
list = getFileList(input); | |
for (i = 0; i < list.length; i++) |
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//ImageJ macro making a tilted movie out of stack | |
//uses shear transform + rotation | |
//Eugene Katrukha katpyxa at gmail.com | |
requires("1.48h"); | |
sTitle=getTitle(); | |
sMovieTitle=sTitle+"_tilt_movie"; | |
setBatchMode(true); | |
//Dialog |
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/* | |
************* Temporal-Color Coder ******************************* | |
Color code the temporal changes. | |
Kota Miura (miura@embl.de) | |
Centre for Molecular and Cellular Imaging, EMBL Heidelberg, Germany | |
If you publish a paper using this macro, please acknowledge. |
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//ImageJ macro making a movie (stack) of zooming on selected rectangle (ROI) | |
//Eugene Katrukha katpyxa at gmail.com | |
requires("1.48h"); | |
//check if there is rectangular selection | |
if(selectionType() ==0) | |
{ | |
sTitle=getTitle(); | |
sMovieTitle=sTitle+"_zoom_movie"; | |
setBatchMode(true); |
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var system; | |
var input, button, greeting; | |
var diffusion; | |
var nParticleTotN; | |
var sigma; | |
var nLifetime; | |
var velocityx; | |
var velocityy; | |
function setup() { |
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clear all | |
%% READ IMAGE FROM FILE | |
I=imread('kymo.bmp'); | |
%maximum delay time (in frames) | |
nMaxTime = 60; | |