Skip to content

Instantly share code, notes, and snippets.

@elgartmi
elgartmi / guess_Nextera_Barcodes_v1.py
Last active January 28, 2017 16:08
Identify Nextera barcodes from Illumina Index FASTQ files (without prior knowledge)
from __future__ import print_function
from itertools import islice
import sys
Nextera_S_barcodes=['CTCTCTAT','GCGTAAGA','TATCCTCT','AGAGTAGA','GTAAGGAG','ACTGCATA','AAGGAGTA','CTAAGCCT']
Nextera_N_barcodes=['TAAGGCGA','CGTACTAG','AGGCAGAA','TCCTGAGC','GGACTCCT','TAGGCATG','CTCTCTAC','CAGAGAGG',
'GCTACGCT','CGAGGCTG','AAGAGGCA','GTAGAGGA']
def eprint(*args, **kwargs):
print(*args, file=sys.stderr, **kwargs)