| { | |
| "basics": { | |
| "name": "Eliseo Papa", | |
| "label": "Director AI Engineering at AstraZeneca", | |
| "picture": "", | |
| "email": "elipapa@noreply.users.github.com", | |
| "phone": "", | |
| "website": "", | |
| "summary": "I trained as a biomedical engineer and then as a clinician. Now I use my background to connect the dots between medicine and engineering. I work on building AI and data science product that can speed up the drug development process and bring medicines in the hands of patients faster.", | |
| "location": { |
Xavier Amatriaian created some of the best basic tutorials:
the biggest one was from a recsys summer school: https://www.slideshare.net/xamat/recommender-systems-machine-learning-summer-school-2014-cmu (2 hr video here: 2hr video )
He has been prolific afterwards:
| # pip install ontoma | |
| from ontoma.interface import OnToma | |
| ot = OnToma() | |
| # the following will download the latest EFO OBO file from github | |
| # and output a tab separated files of labels <=> codes to a file | |
| for k,v in ot.efo_to_name.items(): | |
| print(k,v,file=open('efolabel.txt','a'),sep="\t") |
| ''' | |
| standalone script to create a genes JSON object. | |
| ''' | |
| #!/usr/bin/env python3 | |
| import os | |
| import time | |
| import pandas as pd | |
| from sqlalchemy import create_engine |
| apiVersion: v1 | |
| kind: Service | |
| metadata: | |
| name: apiproxysvc-node | |
| labels: | |
| name: apiproxysvc-node | |
| spec: | |
| type: NodePort | |
| ports: | |
| - name: http |
| apiVersion: extensions/v1beta1 | |
| kind: Deployment | |
| metadata: | |
| name: apiproxy-eu | |
| spec: | |
| replicas: 1 | |
| template: | |
| metadata: | |
| labels: | |
| name: apiproxy-eu |
| # Sensible Bash - An attempt at saner Bash defaults | |
| # Repository: https://github.com/mrzool/bash-sensible | |
| ## GENERAL OPTIONS ## | |
| set -o noclobber | |
| shopt -s checkwinsize | |
| PROMPT_DIRTRIM=2 | |
| bind Space:magic-space | |
| shopt -s globstar 2> /dev/null | |
| shopt -s nocaseglob; |
| #!/usr/bin/env bash | |
| # assuming your ES is at http://localhost:9200 | |
| # set all existing indices to 0 replicas | |
| curl -XPUT "http://localhost:9200/_settings" --data '{"index":{"number_of_replicas": 0}}' | |
| # set marvel index to default 0 replicas | |
| curl -XPUT "http://localhost:9200/_template/custom_marvel" --data '{ | |
| "template": ".marvel*", |
| # Inspirations: | |
| # http://mutelight.org/practical-tmux | |
| # http://zanshin.net/2013/09/05/my-tmux-configuration/ | |
| # http://files.floriancrouzat.net/dotfiles/.tmux.conf | |
| # http://stackoverflow.com/questions/9628435/tmux-status-bar-configuration | |
| # https://github.com/Lokaltog/powerline | |
| # https://github.com/remiprev/teamocil | |
| # http://superuser.com/questions/74492/whats-the-best-prefix-escape-sequence-for-screen-or-tmux | |
| # http://blog.hawkhost.com/2010/07/02/tmux-%E2%80%93-the-terminal-multiplexer-part-2/ | |
| # |
People experimenting with kubernetes clusters on the GKE not necessarily have money to keep a full cluster on at all time. GKE clusters can be easily resized, but this still incurs in the full instance cost when the cluster is up.
Google has added preemptible instances that are ideal for many