-
-
Save elvismdev/12ba4e6efc01730e193c to your computer and use it in GitHub Desktop.
/** | |
* Find all the genes from a DNA string file and using StorageResource class. | |
* | |
* @author (Elvis Morales) | |
* @version (1.0) | |
*/ | |
import edu.duke.*; | |
import java.io.File; | |
public class FindMultipleGenesStorage { | |
public int findStopIndex(String dna, int index) { | |
int stop1 = dna.indexOf("tga", index); | |
if ( stop1 == -1 || ( stop1-index ) % 3 != 0 ) { | |
stop1 = dna.length(); | |
} | |
int stop2 = dna.indexOf("taa", index); | |
if ( stop2 == -1 || ( stop2-index ) % 3 != 0 ) { | |
stop2 = dna.length(); | |
} | |
int stop3 = dna.indexOf("tag", index); | |
if ( stop3 == -1 || ( stop3-index ) % 3 != 0 ) { | |
stop3 = dna.length(); | |
} | |
return Math.min( stop1, Math.min(stop2, stop3) ); | |
} | |
public StorageResource storeAll(String dna) { | |
String dnaLow = dna.toLowerCase(); | |
int start = 0; | |
StorageResource genes = new StorageResource(); | |
while (true) { | |
int loc = dnaLow.indexOf( "atg", start ); | |
if ( loc == -1 ) { | |
break; | |
} | |
int stop = findStopIndex( dnaLow, loc+3 ); | |
if ( stop != dna.length() ) { | |
genes.add( dna.substring(loc, stop+3) ); | |
start = stop + 3; | |
} else { | |
start = start + 3; | |
} | |
} | |
return genes; | |
} | |
public void testStorageFinder() { | |
FileResource dnaFile = new FileResource(); | |
StorageResource genesFound = storeAll( dnaFile.asString() ); | |
System.out.println( "Number of genes found: "+genesFound.size() ); | |
printGenes( genesFound ); | |
} | |
public float cgRatio( String dna ) { | |
String dnaLow = dna.toLowerCase(); | |
int cgCount = 0; | |
int start = 0; | |
while (true) { | |
int pos = dnaLow.indexOf("c", start); | |
if (pos == -1) { | |
start = 0; | |
break; | |
} | |
cgCount += 1; | |
start = pos + 1; | |
} | |
while (true) { | |
int pos = dnaLow.indexOf("g", start); | |
if (pos == -1) { | |
start = 0; | |
break; | |
} | |
cgCount += 1; | |
start = pos + 1; | |
} | |
return ( (float) cgCount ) / dna.length(); | |
} | |
public void printGenes( StorageResource sr ) { | |
int sixtyCharQty = 0; | |
int highCgRatioQty = 0; | |
float cgRatioConst = (float) 0.35; | |
for ( String s : sr.data() ) { | |
if ( s.length() > 60 ) { | |
System.out.println( "String longer than 60 characters: "+s ); | |
sixtyCharQty++; | |
} | |
if ( cgRatio(s) > cgRatioConst ) { | |
System.out.println( "String with C-G-ratio higher than 0.35: "+s ); | |
highCgRatioQty++; | |
} | |
} | |
System.out.println( "60 characters qty: "+sixtyCharQty ); | |
System.out.println( "Strings with C-G-ratio higher than 0.35: "+highCgRatioQty ); | |
} | |
} |
SrijanBanik
commented
May 28, 2020
via email
Okay here are my answers
For Final Assignment Week 2
(NOTE: not the answer for practice quiz !!! )
TOTAL GENES = 69
Total number of strings with length greater than 60 : 23
Total number of strings with CG Ratio greater than 0.35 : 40
Longest gene length is : 489
Total number of occurances of CTG is : 224
Question 1 : turkey ,duck and quails
Question 2 :The method mystery is given a string and it returns a string which is the same string but with the first three T's removed.
Hope this clears the doubts !!!!...
Warning : Copying other's answer wont pay off your money and time efforts !!
GOOD LUCK!!!!
TOTAL GENES = 69
Total number of strings with length greater than 60 : 23
Total number of strings with CG Ratio greater than 0.35 : 40
Longest gene length is : 489
Total number of occurances of CTG is : 224
Cheers!Wrong answer
it is the correct answer it worked with me i passed it with 90%
yes this is the correct answer , worked for me and passed with 100% can u please share your code ? @citoyenu
public class Training {
public static void main(String[] args) { //String dna="AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTCACCCTTCTAACTGGACTCTGACCCTGATTGTTGAGGGCTGCAAAGAGGAAGAATTTTATTTACCGTCGCTGTGGCCCCGAGTTGTCCCAAAGCGAGGTAATGCCCGCAAGGTCTGTGCTGATCAGGACGCAGCTCTGCCTTCGGGGTGCCCCTGGACTGCCCGCCCGCCCGGGTCTGTGCTGAGGAGAACGCTGCTCCGCCTCCGCGGTACTCCGGACATATGTGCAGAGAAGAACGCAGCTGCGCCCTCGCCATGCTCTGCGAGTCTCTGCTGATGAGAACACAGCTTCACTTTCGCAAAGGCGCAGCGCCGGCGCAGGCGCGGAGGGGCGCGCAGCGCCGGCGCAGGCGCGGAGGGGCGCGCCCGAACCCGAACCCTAATGCCGTCATAAGAGCCCTAGGGAGACCTTAGGGAACAAGCATTAAACTGACACTCGATTCTGTAGCCGGCTCTGCCAAGAGACATGGCGTTGCGGTGATATGAGGGCAGGGGTCATGGAAGAAAGCCTTCTGGTTTTAGACCCACAGGAAGATCTGTGACGCGCTCTTGGGTAGAGCACACGTTGCTGGGCGTGCGCTTGAAAAGAGCCTAAGAAGAGGGGGCGTCTGGAAGGAACCGCAACGCCAAGGGAGGGTGTCCAGCCTTCCCGCTTCAACACCTGGACACATTCTGGAAAGTTTCCTAAGAAAGCCAGAAAAATAATTTAAAAAAAAATCCAGAGGCCAGACGGGCTAATGGGGCTTTACTGCGACTATCTGGCTTAATCCTCCAAACAACCTTGCCATACCAGCCCATCAGTCCTCTGAGACAGGTGAAGAACCTGAGGTCGCAGGAGGACACCCAGAAGGTCCAGAGAGAGCCTCCTAGGCCCCCCACCTCCCCCCGTGGCAGCTCCAACCCCAGCTTTTTCACTAGTAAGGCAGTCGGGCCCCTGGGCCACGCCCACTCCCCCAAGCGGGGAAGGAGCTTCGCGCTGCCGCTTGGCTGGGGACTGGGCACCGCCCTCCCGCGGCTCCTGAGCCGGCTGCCACCAGGGGGCGCGCCAGCGGTGTCCGGGAGCCTAGCGGCGCGTGTGCAGCGGCCAGTGCACCTGCTCTGGCCCTCGCCGCGGTCTCTGCCAGGACCCCGACGCCCAGCCTGACCCTGCCATTCAGCGGGGCTGCGGCTCCACGGCCTGCGACAGCAGCCCCACCTGGCATTCAGCGCGCTCCCGGGGGCAGAGGTCGCGGTGTCCTCACGCTGTGGTGCCGGCCTACAACCCCCACGCCGGGCTCGGGCCCGGCGGAGGAGGGCGATGCTCCCCGGGTAGGACAAACCGGTCACCTGGGCTGCGACGGCGGCTTAGGGGCAGAAGCGGCGGTCCAGGGCCGCCTGGCGCAGCAGCCTGTCCCAGCCGCGGTCCCTGCAGTCCCTCCCTGGCGGCTGCGCAGCCGTCCCACGACAGGGGCCATAAACTCTCCAGAGCGGAAAGCCGCACCCTGGTGGCCCGGCCCCGCGCCCAGACCTGGCGGCCGCTGGCACCTGACCCGCTGCATGGGTCTCCAGGGAGCTCGCTGCCCACCCGGCGCTGCAGGCTCGGCTCCCTCGTACACTCTCTGGTAGGTGCTAGGGACGACCCTATGGGCCAGCTTGCCATGCCCAGTCCCCAGGCCGCACCCACCCTGGCTCCCTGGGCTAGGGGACTGGCTCCTCCTGTGAGTCGTGGGTCTGGGAGGCAGGGGCGTTAGGGGAGAGTGAGGGACCGAGGGCAGCCCCTGCTGTGTGCACAGCGAGGTCGTGCACAGGCGTCTGTTGCAGAGCGTGCAGCTTCAGATGAGACTGGATTGCAGGTGGAGATGACTGTGGGTGCGCACACCTGGAGGTGAAGGGGAGGCAGCCTGTCTACCTGACCCATGAAATACAGGAGACTGTACCCCAGAAGCAGCGGGTTCACTGCTCCATTGATTAAGCAAGTCTGGGACACACATGTAGCTAAGCTGTGAGTTCTGTACCAGCGATCCCAACACCCACGCCCTCAGAAAGACACTGGTGTGGGGCCTGGGTGCTTGTCAGGCCTGAAAGTGGAGAGCACGGGCCAGAGACACTGAGTAGGGGGAACCCACCCTAGGGCTCTGAGGGACGACGATGTGGGGAGCTGGTGACAGAGCCTGAGCTGGCCCAATGTTGCACGGTGGGGACAGATTCGAGGTACAGTGGGGACTGGTGACCTCAGTTCCCAGTGTCCCAGCCTGGCCTCCCAGTCCACCCAGCAATTAGTGGGTGCTGCCCTGCAAAGACTCTGGGGGTGCCTCAGCCCTCCTCATCACACGTGACTGGTGACTTCTGTGTCCACCCGCACAATAAGAGGGATCTTCTCTCACTTTCAGGCAAGCCCAAGAAAGTCAGGGGCCTATGTGAGCCAAAGAGGAGAGAAGGTGATGCCTCAGCCCAGTGTTTCTGCCCCACCTCGCTTGTGGCCTTCGGAACTTGATTTGCACCGCAGGAAAATGGGCAATGAAAACCCCTCCCTAACTGGCTTCTCAGTCCACTCTGACCAGCCCACTGCACAGCGCCCACCCTGCAGCTCCAGGTACAGAGGCTGGGATGGCTCTGGGCTGACCTAAGGGCCTTCTGATGGCTCCAACCCTCGGGATGCCTCATGCTCACCCTTTGGCACCCACCTGACAGCTCAGCATCTCTGCTCTCTGCCATCCTCAATGCCTGCTCTAGACAAGCCCAAGTCCCCCAGGAGTGGCAGAGGGAACTGAGCCGAAAACTAAGTCTCGGCTCACTGAACCCCAAGTGGGCTGTCCAGCCTCGCCCTTCAGTTCACAACCCCAGGCAGGTTCCCTCCAGGGATGTGATCCCAGGGGCCACAGCAGCACATTCTGGCCTAACCTATCCACTATTTAAACAGTTACTGAAAAGGCCAGGATGGCCGTGGGCCCTGACATTAATCCCCTTTCTCTGTGAGGGGGCTGGGTTGGGTTTGCCATCCTGATGTCTTTGTGGAAAGAGCTGGCAGGTGAAGCAAGTCTCAGGGGCCAGCCATGGGACAAGGAACCTAGGACTGGCCTCTGCTGGAACCCTCTGAGGCCCCTGCGGACAGGAGGATCCAATGGAGGTCTAGCCACCCCTCCCAGGTTGGTGCTCACAGCCCCTCCCTGGCCCACTCCCTGCACACCTGCACCTGCTGGTCTCTGGGAGAGGAGCATCCATCCATCTTGTGCGCATAGCTTTCGGCTCCATTTTCATGAGGATGGTCTCCTTGGCAGAAATGCCCATTAGGGGATCCTGAGCCTGTGCTAGCTCTTCTCTAAGTGCCAAAGCCAGTGAGAGGGACTTGAAAACTCAAGACTTATTAACAGTATTTTCTGCATTTTGTGCTTTCAGGGTTGTTTTTTCCTTAAAATGTGTAAAAACAAACATTGAGATTTCTATCTTTTATATAATTTGGATTCTGTTATCACACGGACTTTTCCTGAAATTTATTTTTATGTATGTATATCAAACATTGAATTTCTGTTTTCTTCTTTACTGGAATTGTTAACTGTTTTATAGGCCAAATCTTTTAAAAAAAACACATCTCTCTAATTTCTCTAAACATTTCTAATTACATATATATTTACTATACCTAATACACTACTTTGGAATTCCTTGAGGCCTAAATGCATCGGGGTGCTCTGGTTTTGTTGTTGTTATTTCTGAATGACATTTACTTTGGTGCTCTTTATTTTGCGTATTTAAAACTATTAGATCGTGTGATTATATTTGACAGGTCTTAATTGACGCGCTGTTCAGCCCTTTGAGTTCGGTTGAGTTTTGGGTTGGAGAATTTTCTTCCACAAGGGATTGTCTTGGATTTTTCTGTTTCTCCCTCAATATCCACCTGGAAAACATTTCAATTAATTTATATTTACTTAAATATTTCTGTGCAAAAACTGTGTACAAAAGCCCCAAAGCATAATTTGTGCAGTTGAGCGCATGTTCTGTTGTTCAGCATTTATGGTGGTTGGTAGTGGAAAAGATTTTTAGAATATGTGGATTTTCGGGATATTCCCAGAAGCCCAGATAGCGACACTTTACCTTTGGAGGAATTACTTCTCAGAATATTGCACACAATCAATCGCCTTTGGAAGGAGCATATATCCCCAGCAAAAGCTCTGGTTTTTTGAAGTCTGTATTGTGTGTTACTTCCAGGAGAATATGCAATGATGACAATGTTATTAGATGATTCAAATATGAAGTGCTGTTATGCCAAACAATGAATCTTTGTGTTATACATTATGCCTAACTATAAATCTTTGTGTTATACATTTTAATGTCATTGGAGAGTACTCCTGTCTTCTTGGCATTATTGATAATTAGATTCTAATTGCTAATAAGTCAGAAAAATTAGGAACACCAAATTTCAGTTGTCTCAAAAGCACTCCTCTTATTAAATTTGGATGTTTACCTTTATCACATCAAAAGAAATATTGTTAGAAAGGTGTTTAATGTTTTGCAGATGGATAGATTACTGTTATTAGTTCTCATTTCATTGTTAATTTTTAAAACCATAAGGTTGGAAGTATCAATATGCCTTTCAATATACCTTAGTGGAATTTATTAAATTTTCATGGATGTCCTTTAGGGGGTTCAGGAAGTTATTTCTATTGCTAGATTTCTGGAAGATTTATCAGGAATGAGTGTCAGACATTGTCAGACGTCCATTGAAATCATCATGGTCTTTTCCTTTATTCTATTAATATGATGTATTACACTGATTGATTTTTAAATTTGTATTGGTAGGATAATTCCACTTGGTTATATTGTCTAACTTTTTTCTAATTTTCTTTCATTTTTATTACAGATGAGGCCTCACTCTGTCACCCAGGTTGGGGTGGAGTGGCACAGTCACAGCTCACTATAACCTCAAGCTCCTGGGCTCAAGTGATCCTGCCACCTCAGCCTCCTAAGTAGCTGGAACTACAGATGTGCACTGCCATGCCAGGCTTGTCTAACATTTTTATGTGTTGCTTCATCCAGTTTGCTAGAGTTTTTGGAGATTTCTGTCTTCATTCATGAGGGATAATAGTCTGCACTTTTATTTTCTTGTGATACTTTTGTCTGATTTGTTATCTGGGTAATACTGGCCTTGAAAATGAATTGATGTTTTCCTGCTTCTCTGCTTTGCAAGTGTTTGTGAAGGATTGGTTATTCATTAAGTGTTTAATAGAATTCACTAGTGAAGCTATGTGAGCCAGGGCTAGACTGATGAAGAGTTTTCATTAGTCTAATCTGTTTACTTGCTGTATAAGTACGCATATATTCTCTTTCTTCTTGATTTAATTTTACACTTTGTGTATAGCAGGGAATCTGTGTCTAATTTGTAGTATTTCATGCTTCTAGGTTTTCATGGCAGTTGAGATGTAAGAATAACAATAATGTTGGGAGAAGGAAGTTGTGGACAATCCATGAATATCCCAACATCTGTTGTAGGAAGGTTAAGATTACTTTTTTTTTTTTTGCTGTACTGAACTGAATACTCTTATTTATAATGTCAGACAAATGTAATGTTGTATATAAATAGAACTAGGAAAATGTGCCATTTGTCTTAGTATTTAATCAAGATGGAAGTCTGGGCCTACCTCCTCTCTTTTATTAATATGTAGACAGGACACCAACACAAATTAGAATGAAGACAAACAAAATGTTAGCAAATGAAGAATGGTATCAATTGGTTAAAATGTGATGAAATAGAGTGGTGAATATTTACATAGAATCCATGATGTGTTAGGTGCTATTTCAAGCTATTTGCACATATAGTTTTAATACCAATGACGTTAAAATGTATAACACAAAGATTCATATAAATAAAAATTACAACATTGTAAATAATATTAGGTGACACTAAAACTGTCATAGAAATACACATTTATATAAAACATAAAGTAACATGAAGTATTAAATTTTAGAAACTTTGATTACTAATCAGATGAACAACTGATTAGCCTTTTTATCCAGTAAAAAAGGCATACATATTATTTTCAAATTCCAGAGACAAATATTTTAAATATTGAAGTTGAAGACCTAAAAATGTGTCACTGACCTCATGGAAGTAGATATTCACTAGGTGATATTTTCTAGGCTCTCTGAAATTATATCAGAAAAATGTGAATTAGAATATAACCCATAAATAATATCTGGCCACATACAAAGTAATTGAAGATCAATTTAAATGGCTATTGGATTAAGAAATAGGGACTGAGGTAAATTTGCAGTGTCAGGGAGGATCTAAGGAGGAAGCATTGACACTGGAGCCCAAGGACCTGGGATCACAGAACAGATTCTACCAGTGCTAACTTACTGCTCCACAGAAAACATCAATTCTGCTCATGCGCAGGTACAATTCATCAAGAAAGGAATTACAACTTCAGAAATGTGTTCAAAATATATCCATACTTTGACATATTAATGAAGTAATCACATTCTACACATAACTACTCCATATGGAATACTGGGGAGGAGGTGTTCCAAATAAAGAGACTGAGGATTTCTCATGAGAACTCAGTGTCTGCTAGAAAATATCTAAGTAAAATATTTTACTTATGTGGAAAGTGTGGATGTTTGTGCATCAAAAGTTTCAAGAATCCCTAAAATTTACAATGGAGATGAGGAGAAAATATCAGAATTTCCCAGCACCAGAAATAAGGCAAGAAAAAATTCAGAGGGGTTGTAAATGTGAAAAGCCAATGGCTGGTCACACAGCAACATTGATAACCTTGTGCCTGGACAACTAGAATAAATACATAAACATACACATTGAAAATATTTCCAATATTAGATCTCCCTCATGTGAGAACTAAATTATAAAGATTGAAGCATAGAAGAAAATAAGCTACCAGAATAAATTTGATTACACATAAATTTCTGATATTGAAACTGTCACAAATGTTTAAGTTGGTAGTGGAAGACAAAGGACATATAATCTTGGGAGTCCTAAGGCCCTGCCCACTGCCAGTCCCTCCACACTACTACAGCTGATGCTTTCTGGAAATCACCACCTCCTGGCAGGAGCCCAACCAGCACAAATATAGAGCATTAAACCACCAAAGCTAAGGAGGCTCACAGAGTCTATTGCACCCTTCACCACCTCCACTGGAACAGGCGCTGGTATCCATGGCTCAGAGACCCAAAGATGGTTCACATCACAGGGCTCTATGCAGACAACCCCCAGTACCAGCCCAAAGCCACGTAGACCTGCTGGGTGGCTAGACCCAGAAGAGAGACAACAATCAATGCACTTTGGCTTACAGGAAGCCATGCCCATAGGAAAAAGGGGAGAGTACTACGTCAAGGGAACACCCCGTGGGATGAAAGAGTCTGAACAACAGTCTTCAGCCCTAGACCTTTCCTCTGACAGAGTCTACCAAAATGAGAAGGAACCAGAAAACCAACCCTGGTAATCTGACAAAACAAGAATCTTCAACACCCCCCAAAAAATCACACCAGTTCATCACCAATGGATCCAAACAAAGAAGAAATCACTGATTCATCTAAAAAAAAATTCAGGTTAGTTATTAAGCTAATCAGGGAGGGGCCAGAGAAAGATGAAGCCCAATGCAAGAAAATCCAAAAAATGATACAATACGTGAAGGGAGAATTATTCAAGGAAATAGATAGCTTAAATAAAAAAATAAAAAATCAGGAAACTTTGGACGTACTTTTAGAAATGTGAAATGCTCTGGAAAGTCTCAGCAATAGAATTGAACAAGTAGAAGAAAGAAATTCAGAATTCGAAGACAAGGTCTTTGATTTAACCCAATCCAATAAAGACAAAGAAAAAAGAATAAGAAAATATGAGCAAAGTCTCCAAGGAGTCTGGCATTCTGTTAAATGATGAAACCTAACACTAATTGGTGTACCTGAGGAAGAAGTGAATTCTAAAAGCCAGGAAAACATATTTGGGAGAATAATCTAGGAAAACTTCCATGGCCTTGTGAGAGACCTAGACATCCAAATACAAGAACCACAAATAACACCTGGGAAATTCATCACAAAAAGATCTTAGCCTAGGCACATTGTCATTAGGTTATCCAAAGTTAAGACAAAGGAAAGAATCTTAAGAGCTGTGAGACAGAAGCACTAGGTAACCTATAAAGGAAAACCTGTCAAATTAACAGCAGATTTCACAGCAGGAACCTTACAAGCTAGATGGGATTGGGGCCCTTTCTTCAGCCTCCTCAAACAAAACAATTATCAGCCAAGAATTTTGTATCCAGCAAAACTAAACATCATATATGAAGGAAAGATACAGTCATTTTCAGACAAACAAATGCTGACAGAATTTGCCATTACCAAGCCAGGACTCTAAGAACTGCTAAAAGGAGCTCTAAATCATGAAACAAATCCTGGAAACACATCAAAACAGAACTTCATTAACGCATAAATCACACAGGACCTATAAAACAAAAATACAAGTTAAAAAACAAAAACAAAGTACAGAGGCAACAAAGAGCATGATGAAAGCAATGGTACCTCACTTTTTAATACTAATGTTGGTTGTAAATGGCTTAAATGCTCCACTTACAAGATACAGAACCACAGAATGGATAACAACTCACCAACTAACTATCTGCTGCCTTCAGGAGACTCACCTAACACATAACGACTTACATAAACTTAAGGAAAGTGGTAGAAAAAGGCATTTCATGCAAATGGACACCAAAAGCAAGCAGCAGTAACTATTCTCATATGAGACAAAACAAACTTTAAAGCAACAGTAGCTAAAAGAGACAAAGAGAGACAGTATATCATCTGTCACCTGACAGTCTCATCCAACAGAAAAATATGACAATCCTAAACATATGTGAACCTAACACTGGAGCTCCCAAATTTATAAAACAATTACTAGTAGACATAAGAAATAAGATAGACAGCAACACAATAATAGTGGGGGACTTCAATACTCCACTGACAGCACTAGACAGGTCATCAAGACAGAAAGTCAACAAAGAAACAATGGATTTAAACTATACTTTGGAACAAATGGACTTAACAGATATATATAGAACATTTCATCCAACAACCACAGAATACACATTCTATTCAACAGCACATGGAATTTTCTCCAAGATAGACCATATGATAGGCCATAAAATGAGTCTCAATAAATTTAAGAAAATTGAAATTGTATCACGCACTCTCTCACATCACAATGGAATAAAACTGAAAATCAACTCCAAAAGGAATCTTCGAAACCATGCAAATACATGGAAATTAAATAACCTGCTCCTGAATGAGCATTGGGTGAAAAACGAAATCAAGATGGAAATGTAAAAAATTTCTTCGAACTGGATGACACAACCTATCAAGACCTCTGGGATACAGCAAAGGCAGTGCTAAGAGGAAAGTTTATAGCACTAAACACCTACGTCGAAAAGTCTGAAAGAGCACAGACAATCTAAGTTCACATCTCAGGGAACTAGAGAAGGAGGAACAAGCCAAACCCAATCCCAGCAAACAAAGGAAATAACCAAGATCAGAGCAGAACTAAATGAAATTGACACAACAACAACAACAACAAAAATACAAAACATAAATAAAACAAAAATTTGGTTATTTGAAAAGATA"; //int a = findAllGenes(dna); String dna ="ATGTGAATGATAAATGTAGTAA"; System.out.println("nombre de genes"+findAllGenes(dna)); } public static int findStopCodon(String stopCodon,String dna, int startIndex) { int stopIndex = dna.indexOf(stopCodon, startIndex+3); while (stopIndex != -1) { if((stopIndex-startIndex)%3 == 0) { return stopIndex; } else { stopIndex = dna.indexOf(stopCodon, stopIndex+1); } } return -1; } public static String writeGene(String dna,int where) { int startIndex = dna.indexOf("ATG",where); if(startIndex == -1) {return "";} int taaCodon = findStopCodon("TAA",dna,startIndex); int tgaCodon = findStopCodon("TGA",dna,startIndex); int tagCodon = findStopCodon("TAG",dna,startIndex); int minIndex = 0; if(taaCodon == -1 || (tgaCodon!=-1 && tgaCodon<taaCodon)) { minIndex = tgaCodon; } else {minIndex = taaCodon;} if(minIndex==-1 || (tagCodon!=-1 && tagCodon < minIndex)) { minIndex = tagCodon; } if(minIndex== -1) {return "";} return dna.substring(startIndex,minIndex+3); } public static int findAllGenes(String dna) { String gene = ""; int startIndex = 0; int count = 0; while(true) { if(testGene(dna)==1) { gene = writeGene(dna,startIndex); count +=1; System.out.println(gene); startIndex = dna.indexOf("ATG",dna.indexOf(gene))+gene.length(); } else { System.out.println("failed"); break; } } return count; } public static int testGene(String dna) { int a=0 ; for(int i=0; i<dna.length(); i++) { if(dna.charAt(i) == 'A' || dna.charAt(i) == 'T' || dna.charAt(i) == 'G' || dna.charAt(i) == 'C' ) {a = 1;} else {a = -1; break; } } return a;
}
}
-- you can add your functions below 👍
this code is 💩..
Q.1. ans=1
Q.2 ans=1
Q.3 ans=1
Thanks man!
TOTAL GENES = 69
Total number of strings with length greater than 60 : 23
Total number of strings with CG Ratio greater than 0.35 : 40
Longest gene length is : 489
Total number of occurances of CTG is : 224
Cheers!Wrong answer
it is the correct answer it worked with me i passed it with 90%
yes this is the correct answer , worked for me and passed with 100% can u please share your code ? @citoyenu
public class Training {
public static void main(String[] args) { //String dna="AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTCACCCTTCTAACTGGACTCTGACCCTGATTGTTGAGGGCTGCAAAGAGGAAGAATTTTATTTACCGTCGCTGTGGCCCCGAGTTGTCCCAAAGCGAGGTAATGCCCGCAAGGTCTGTGCTGATCAGGACGCAGCTCTGCCTTCGGGGTGCCCCTGGACTGCCCGCCCGCCCGGGTCTGTGCTGAGGAGAACGCTGCTCCGCCTCCGCGGTACTCCGGACATATGTGCAGAGAAGAACGCAGCTGCGCCCTCGCCATGCTCTGCGAGTCTCTGCTGATGAGAACACAGCTTCACTTTCGCAAAGGCGCAGCGCCGGCGCAGGCGCGGAGGGGCGCGCAGCGCCGGCGCAGGCGCGGAGGGGCGCGCCCGAACCCGAACCCTAATGCCGTCATAAGAGCCCTAGGGAGACCTTAGGGAACAAGCATTAAACTGACACTCGATTCTGTAGCCGGCTCTGCCAAGAGACATGGCGTTGCGGTGATATGAGGGCAGGGGTCATGGAAGAAAGCCTTCTGGTTTTAGACCCACAGGAAGATCTGTGACGCGCTCTTGGGTAGAGCACACGTTGCTGGGCGTGCGCTTGAAAAGAGCCTAAGAAGAGGGGGCGTCTGGAAGGAACCGCAACGCCAAGGGAGGGTGTCCAGCCTTCCCGCTTCAACACCTGGACACATTCTGGAAAGTTTCCTAAGAAAGCCAGAAAAATAATTTAAAAAAAAATCCAGAGGCCAGACGGGCTAATGGGGCTTTACTGCGACTATCTGGCTTAATCCTCCAAACAACCTTGCCATACCAGCCCATCAGTCCTCTGAGACAGGTGAAGAACCTGAGGTCGCAGGAGGACACCCAGAAGGTCCAGAGAGAGCCTCCTAGGCCCCCCACCTCCCCCCGTGGCAGCTCCAACCCCAGCTTTTTCACTAGTAAGGCAGTCGGGCCCCTGGGCCACGCCCACTCCCCCAAGCGGGGAAGGAGCTTCGCGCTGCCGCTTGGCTGGGGACTGGGCACCGCCCTCCCGCGGCTCCTGAGCCGGCTGCCACCAGGGGGCGCGCCAGCGGTGTCCGGGAGCCTAGCGGCGCGTGTGCAGCGGCCAGTGCACCTGCTCTGGCCCTCGCCGCGGTCTCTGCCAGGACCCCGACGCCCAGCCTGACCCTGCCATTCAGCGGGGCTGCGGCTCCACGGCCTGCGACAGCAGCCCCACCTGGCATTCAGCGCGCTCCCGGGGGCAGAGGTCGCGGTGTCCTCACGCTGTGGTGCCGGCCTACAACCCCCACGCCGGGCTCGGGCCCGGCGGAGGAGGGCGATGCTCCCCGGGTAGGACAAACCGGTCACCTGGGCTGCGACGGCGGCTTAGGGGCAGAAGCGGCGGTCCAGGGCCGCCTGGCGCAGCAGCCTGTCCCAGCCGCGGTCCCTGCAGTCCCTCCCTGGCGGCTGCGCAGCCGTCCCACGACAGGGGCCATAAACTCTCCAGAGCGGAAAGCCGCACCCTGGTGGCCCGGCCCCGCGCCCAGACCTGGCGGCCGCTGGCACCTGACCCGCTGCATGGGTCTCCAGGGAGCTCGCTGCCCACCCGGCGCTGCAGGCTCGGCTCCCTCGTACACTCTCTGGTAGGTGCTAGGGACGACCCTATGGGCCAGCTTGCCATGCCCAGTCCCCAGGCCGCACCCACCCTGGCTCCCTGGGCTAGGGGACTGGCTCCTCCTGTGAGTCGTGGGTCTGGGAGGCAGGGGCGTTAGGGGAGAGTGAGGGACCGAGGGCAGCCCCTGCTGTGTGCACAGCGAGGTCGTGCACAGGCGTCTGTTGCAGAGCGTGCAGCTTCAGATGAGACTGGATTGCAGGTGGAGATGACTGTGGGTGCGCACACCTGGAGGTGAAGGGGAGGCAGCCTGTCTACCTGACCCATGAAATACAGGAGACTGTACCCCAGAAGCAGCGGGTTCACTGCTCCATTGATTAAGCAAGTCTGGGACACACATGTAGCTAAGCTGTGAGTTCTGTACCAGCGATCCCAACACCCACGCCCTCAGAAAGACACTGGTGTGGGGCCTGGGTGCTTGTCAGGCCTGAAAGTGGAGAGCACGGGCCAGAGACACTGAGTAGGGGGAACCCACCCTAGGGCTCTGAGGGACGACGATGTGGGGAGCTGGTGACAGAGCCTGAGCTGGCCCAATGTTGCACGGTGGGGACAGATTCGAGGTACAGTGGGGACTGGTGACCTCAGTTCCCAGTGTCCCAGCCTGGCCTCCCAGTCCACCCAGCAATTAGTGGGTGCTGCCCTGCAAAGACTCTGGGGGTGCCTCAGCCCTCCTCATCACACGTGACTGGTGACTTCTGTGTCCACCCGCACAATAAGAGGGATCTTCTCTCACTTTCAGGCAAGCCCAAGAAAGTCAGGGGCCTATGTGAGCCAAAGAGGAGAGAAGGTGATGCCTCAGCCCAGTGTTTCTGCCCCACCTCGCTTGTGGCCTTCGGAACTTGATTTGCACCGCAGGAAAATGGGCAATGAAAACCCCTCCCTAACTGGCTTCTCAGTCCACTCTGACCAGCCCACTGCACAGCGCCCACCCTGCAGCTCCAGGTACAGAGGCTGGGATGGCTCTGGGCTGACCTAAGGGCCTTCTGATGGCTCCAACCCTCGGGATGCCTCATGCTCACCCTTTGGCACCCACCTGACAGCTCAGCATCTCTGCTCTCTGCCATCCTCAATGCCTGCTCTAGACAAGCCCAAGTCCCCCAGGAGTGGCAGAGGGAACTGAGCCGAAAACTAAGTCTCGGCTCACTGAACCCCAAGTGGGCTGTCCAGCCTCGCCCTTCAGTTCACAACCCCAGGCAGGTTCCCTCCAGGGATGTGATCCCAGGGGCCACAGCAGCACATTCTGGCCTAACCTATCCACTATTTAAACAGTTACTGAAAAGGCCAGGATGGCCGTGGGCCCTGACATTAATCCCCTTTCTCTGTGAGGGGGCTGGGTTGGGTTTGCCATCCTGATGTCTTTGTGGAAAGAGCTGGCAGGTGAAGCAAGTCTCAGGGGCCAGCCATGGGACAAGGAACCTAGGACTGGCCTCTGCTGGAACCCTCTGAGGCCCCTGCGGACAGGAGGATCCAATGGAGGTCTAGCCACCCCTCCCAGGTTGGTGCTCACAGCCCCTCCCTGGCCCACTCCCTGCACACCTGCACCTGCTGGTCTCTGGGAGAGGAGCATCCATCCATCTTGTGCGCATAGCTTTCGGCTCCATTTTCATGAGGATGGTCTCCTTGGCAGAAATGCCCATTAGGGGATCCTGAGCCTGTGCTAGCTCTTCTCTAAGTGCCAAAGCCAGTGAGAGGGACTTGAAAACTCAAGACTTATTAACAGTATTTTCTGCATTTTGTGCTTTCAGGGTTGTTTTTTCCTTAAAATGTGTAAAAACAAACATTGAGATTTCTATCTTTTATATAATTTGGATTCTGTTATCACACGGACTTTTCCTGAAATTTATTTTTATGTATGTATATCAAACATTGAATTTCTGTTTTCTTCTTTACTGGAATTGTTAACTGTTTTATAGGCCAAATCTTTTAAAAAAAACACATCTCTCTAATTTCTCTAAACATTTCTAATTACATATATATTTACTATACCTAATACACTACTTTGGAATTCCTTGAGGCCTAAATGCATCGGGGTGCTCTGGTTTTGTTGTTGTTATTTCTGAATGACATTTACTTTGGTGCTCTTTATTTTGCGTATTTAAAACTATTAGATCGTGTGATTATATTTGACAGGTCTTAATTGACGCGCTGTTCAGCCCTTTGAGTTCGGTTGAGTTTTGGGTTGGAGAATTTTCTTCCACAAGGGATTGTCTTGGATTTTTCTGTTTCTCCCTCAATATCCACCTGGAAAACATTTCAATTAATTTATATTTACTTAAATATTTCTGTGCAAAAACTGTGTACAAAAGCCCCAAAGCATAATTTGTGCAGTTGAGCGCATGTTCTGTTGTTCAGCATTTATGGTGGTTGGTAGTGGAAAAGATTTTTAGAATATGTGGATTTTCGGGATATTCCCAGAAGCCCAGATAGCGACACTTTACCTTTGGAGGAATTACTTCTCAGAATATTGCACACAATCAATCGCCTTTGGAAGGAGCATATATCCCCAGCAAAAGCTCTGGTTTTTTGAAGTCTGTATTGTGTGTTACTTCCAGGAGAATATGCAATGATGACAATGTTATTAGATGATTCAAATATGAAGTGCTGTTATGCCAAACAATGAATCTTTGTGTTATACATTATGCCTAACTATAAATCTTTGTGTTATACATTTTAATGTCATTGGAGAGTACTCCTGTCTTCTTGGCATTATTGATAATTAGATTCTAATTGCTAATAAGTCAGAAAAATTAGGAACACCAAATTTCAGTTGTCTCAAAAGCACTCCTCTTATTAAATTTGGATGTTTACCTTTATCACATCAAAAGAAATATTGTTAGAAAGGTGTTTAATGTTTTGCAGATGGATAGATTACTGTTATTAGTTCTCATTTCATTGTTAATTTTTAAAACCATAAGGTTGGAAGTATCAATATGCCTTTCAATATACCTTAGTGGAATTTATTAAATTTTCATGGATGTCCTTTAGGGGGTTCAGGAAGTTATTTCTATTGCTAGATTTCTGGAAGATTTATCAGGAATGAGTGTCAGACATTGTCAGACGTCCATTGAAATCATCATGGTCTTTTCCTTTATTCTATTAATATGATGTATTACACTGATTGATTTTTAAATTTGTATTGGTAGGATAATTCCACTTGGTTATATTGTCTAACTTTTTTCTAATTTTCTTTCATTTTTATTACAGATGAGGCCTCACTCTGTCACCCAGGTTGGGGTGGAGTGGCACAGTCACAGCTCACTATAACCTCAAGCTCCTGGGCTCAAGTGATCCTGCCACCTCAGCCTCCTAAGTAGCTGGAACTACAGATGTGCACTGCCATGCCAGGCTTGTCTAACATTTTTATGTGTTGCTTCATCCAGTTTGCTAGAGTTTTTGGAGATTTCTGTCTTCATTCATGAGGGATAATAGTCTGCACTTTTATTTTCTTGTGATACTTTTGTCTGATTTGTTATCTGGGTAATACTGGCCTTGAAAATGAATTGATGTTTTCCTGCTTCTCTGCTTTGCAAGTGTTTGTGAAGGATTGGTTATTCATTAAGTGTTTAATAGAATTCACTAGTGAAGCTATGTGAGCCAGGGCTAGACTGATGAAGAGTTTTCATTAGTCTAATCTGTTTACTTGCTGTATAAGTACGCATATATTCTCTTTCTTCTTGATTTAATTTTACACTTTGTGTATAGCAGGGAATCTGTGTCTAATTTGTAGTATTTCATGCTTCTAGGTTTTCATGGCAGTTGAGATGTAAGAATAACAATAATGTTGGGAGAAGGAAGTTGTGGACAATCCATGAATATCCCAACATCTGTTGTAGGAAGGTTAAGATTACTTTTTTTTTTTTTGCTGTACTGAACTGAATACTCTTATTTATAATGTCAGACAAATGTAATGTTGTATATAAATAGAACTAGGAAAATGTGCCATTTGTCTTAGTATTTAATCAAGATGGAAGTCTGGGCCTACCTCCTCTCTTTTATTAATATGTAGACAGGACACCAACACAAATTAGAATGAAGACAAACAAAATGTTAGCAAATGAAGAATGGTATCAATTGGTTAAAATGTGATGAAATAGAGTGGTGAATATTTACATAGAATCCATGATGTGTTAGGTGCTATTTCAAGCTATTTGCACATATAGTTTTAATACCAATGACGTTAAAATGTATAACACAAAGATTCATATAAATAAAAATTACAACATTGTAAATAATATTAGGTGACACTAAAACTGTCATAGAAATACACATTTATATAAAACATAAAGTAACATGAAGTATTAAATTTTAGAAACTTTGATTACTAATCAGATGAACAACTGATTAGCCTTTTTATCCAGTAAAAAAGGCATACATATTATTTTCAAATTCCAGAGACAAATATTTTAAATATTGAAGTTGAAGACCTAAAAATGTGTCACTGACCTCATGGAAGTAGATATTCACTAGGTGATATTTTCTAGGCTCTCTGAAATTATATCAGAAAAATGTGAATTAGAATATAACCCATAAATAATATCTGGCCACATACAAAGTAATTGAAGATCAATTTAAATGGCTATTGGATTAAGAAATAGGGACTGAGGTAAATTTGCAGTGTCAGGGAGGATCTAAGGAGGAAGCATTGACACTGGAGCCCAAGGACCTGGGATCACAGAACAGATTCTACCAGTGCTAACTTACTGCTCCACAGAAAACATCAATTCTGCTCATGCGCAGGTACAATTCATCAAGAAAGGAATTACAACTTCAGAAATGTGTTCAAAATATATCCATACTTTGACATATTAATGAAGTAATCACATTCTACACATAACTACTCCATATGGAATACTGGGGAGGAGGTGTTCCAAATAAAGAGACTGAGGATTTCTCATGAGAACTCAGTGTCTGCTAGAAAATATCTAAGTAAAATATTTTACTTATGTGGAAAGTGTGGATGTTTGTGCATCAAAAGTTTCAAGAATCCCTAAAATTTACAATGGAGATGAGGAGAAAATATCAGAATTTCCCAGCACCAGAAATAAGGCAAGAAAAAATTCAGAGGGGTTGTAAATGTGAAAAGCCAATGGCTGGTCACACAGCAACATTGATAACCTTGTGCCTGGACAACTAGAATAAATACATAAACATACACATTGAAAATATTTCCAATATTAGATCTCCCTCATGTGAGAACTAAATTATAAAGATTGAAGCATAGAAGAAAATAAGCTACCAGAATAAATTTGATTACACATAAATTTCTGATATTGAAACTGTCACAAATGTTTAAGTTGGTAGTGGAAGACAAAGGACATATAATCTTGGGAGTCCTAAGGCCCTGCCCACTGCCAGTCCCTCCACACTACTACAGCTGATGCTTTCTGGAAATCACCACCTCCTGGCAGGAGCCCAACCAGCACAAATATAGAGCATTAAACCACCAAAGCTAAGGAGGCTCACAGAGTCTATTGCACCCTTCACCACCTCCACTGGAACAGGCGCTGGTATCCATGGCTCAGAGACCCAAAGATGGTTCACATCACAGGGCTCTATGCAGACAACCCCCAGTACCAGCCCAAAGCCACGTAGACCTGCTGGGTGGCTAGACCCAGAAGAGAGACAACAATCAATGCACTTTGGCTTACAGGAAGCCATGCCCATAGGAAAAAGGGGAGAGTACTACGTCAAGGGAACACCCCGTGGGATGAAAGAGTCTGAACAACAGTCTTCAGCCCTAGACCTTTCCTCTGACAGAGTCTACCAAAATGAGAAGGAACCAGAAAACCAACCCTGGTAATCTGACAAAACAAGAATCTTCAACACCCCCCAAAAAATCACACCAGTTCATCACCAATGGATCCAAACAAAGAAGAAATCACTGATTCATCTAAAAAAAAATTCAGGTTAGTTATTAAGCTAATCAGGGAGGGGCCAGAGAAAGATGAAGCCCAATGCAAGAAAATCCAAAAAATGATACAATACGTGAAGGGAGAATTATTCAAGGAAATAGATAGCTTAAATAAAAAAATAAAAAATCAGGAAACTTTGGACGTACTTTTAGAAATGTGAAATGCTCTGGAAAGTCTCAGCAATAGAATTGAACAAGTAGAAGAAAGAAATTCAGAATTCGAAGACAAGGTCTTTGATTTAACCCAATCCAATAAAGACAAAGAAAAAAGAATAAGAAAATATGAGCAAAGTCTCCAAGGAGTCTGGCATTCTGTTAAATGATGAAACCTAACACTAATTGGTGTACCTGAGGAAGAAGTGAATTCTAAAAGCCAGGAAAACATATTTGGGAGAATAATCTAGGAAAACTTCCATGGCCTTGTGAGAGACCTAGACATCCAAATACAAGAACCACAAATAACACCTGGGAAATTCATCACAAAAAGATCTTAGCCTAGGCACATTGTCATTAGGTTATCCAAAGTTAAGACAAAGGAAAGAATCTTAAGAGCTGTGAGACAGAAGCACTAGGTAACCTATAAAGGAAAACCTGTCAAATTAACAGCAGATTTCACAGCAGGAACCTTACAAGCTAGATGGGATTGGGGCCCTTTCTTCAGCCTCCTCAAACAAAACAATTATCAGCCAAGAATTTTGTATCCAGCAAAACTAAACATCATATATGAAGGAAAGATACAGTCATTTTCAGACAAACAAATGCTGACAGAATTTGCCATTACCAAGCCAGGACTCTAAGAACTGCTAAAAGGAGCTCTAAATCATGAAACAAATCCTGGAAACACATCAAAACAGAACTTCATTAACGCATAAATCACACAGGACCTATAAAACAAAAATACAAGTTAAAAAACAAAAACAAAGTACAGAGGCAACAAAGAGCATGATGAAAGCAATGGTACCTCACTTTTTAATACTAATGTTGGTTGTAAATGGCTTAAATGCTCCACTTACAAGATACAGAACCACAGAATGGATAACAACTCACCAACTAACTATCTGCTGCCTTCAGGAGACTCACCTAACACATAACGACTTACATAAACTTAAGGAAAGTGGTAGAAAAAGGCATTTCATGCAAATGGACACCAAAAGCAAGCAGCAGTAACTATTCTCATATGAGACAAAACAAACTTTAAAGCAACAGTAGCTAAAAGAGACAAAGAGAGACAGTATATCATCTGTCACCTGACAGTCTCATCCAACAGAAAAATATGACAATCCTAAACATATGTGAACCTAACACTGGAGCTCCCAAATTTATAAAACAATTACTAGTAGACATAAGAAATAAGATAGACAGCAACACAATAATAGTGGGGGACTTCAATACTCCACTGACAGCACTAGACAGGTCATCAAGACAGAAAGTCAACAAAGAAACAATGGATTTAAACTATACTTTGGAACAAATGGACTTAACAGATATATATAGAACATTTCATCCAACAACCACAGAATACACATTCTATTCAACAGCACATGGAATTTTCTCCAAGATAGACCATATGATAGGCCATAAAATGAGTCTCAATAAATTTAAGAAAATTGAAATTGTATCACGCACTCTCTCACATCACAATGGAATAAAACTGAAAATCAACTCCAAAAGGAATCTTCGAAACCATGCAAATACATGGAAATTAAATAACCTGCTCCTGAATGAGCATTGGGTGAAAAACGAAATCAAGATGGAAATGTAAAAAATTTCTTCGAACTGGATGACACAACCTATCAAGACCTCTGGGATACAGCAAAGGCAGTGCTAAGAGGAAAGTTTATAGCACTAAACACCTACGTCGAAAAGTCTGAAAGAGCACAGACAATCTAAGTTCACATCTCAGGGAACTAGAGAAGGAGGAACAAGCCAAACCCAATCCCAGCAAACAAAGGAAATAACCAAGATCAGAGCAGAACTAAATGAAATTGACACAACAACAACAACAACAAAAATACAAAACATAAATAAAACAAAAATTTGGTTATTTGAAAAGATA"; //int a = findAllGenes(dna); String dna ="ATGTGAATGATAAATGTAGTAA"; System.out.println("nombre de genes"+findAllGenes(dna)); } public static int findStopCodon(String stopCodon,String dna, int startIndex) { int stopIndex = dna.indexOf(stopCodon, startIndex+3); while (stopIndex != -1) { if((stopIndex-startIndex)%3 == 0) { return stopIndex; } else { stopIndex = dna.indexOf(stopCodon, stopIndex+1); } } return -1; } public static String writeGene(String dna,int where) { int startIndex = dna.indexOf("ATG",where); if(startIndex == -1) {return "";} int taaCodon = findStopCodon("TAA",dna,startIndex); int tgaCodon = findStopCodon("TGA",dna,startIndex); int tagCodon = findStopCodon("TAG",dna,startIndex); int minIndex = 0; if(taaCodon == -1 || (tgaCodon!=-1 && tgaCodon<taaCodon)) { minIndex = tgaCodon; } else {minIndex = taaCodon;} if(minIndex==-1 || (tagCodon!=-1 && tagCodon < minIndex)) { minIndex = tagCodon; } if(minIndex== -1) {return "";} return dna.substring(startIndex,minIndex+3); } public static int findAllGenes(String dna) { String gene = ""; int startIndex = 0; int count = 0; while(true) { if(testGene(dna)==1) { gene = writeGene(dna,startIndex); count +=1; System.out.println(gene); startIndex = dna.indexOf("ATG",dna.indexOf(gene))+gene.length(); } else { System.out.println("failed"); break; } } return count; } public static int testGene(String dna) { int a=0 ; for(int i=0; i<dna.length(); i++) { if(dna.charAt(i) == 'A' || dna.charAt(i) == 'T' || dna.charAt(i) == 'G' || dna.charAt(i) == 'C' ) {a = 1;} else {a = -1; break; } } return a;
}
}
-- you can add your functions below +1this code is ..
sorry dude your IDE is poop
Q.1. ans=1
Q.2 ans=1
Q.3 ans=1
Correct Answer
Quize Using Storage Resource week 2
Q1. -->ans 1
Q2 --> ans 1
Q3 --> ans 1
Q4-->return ((double) countcg)/dna.length();
Q5-->The code start=pos+1;should go immediately after the line containing countcg+=1
100% successful!
Q.1. ans=1
Q.2 ans=1
Q.3 ans=1Correct Answer
Aapne bachaliya bhai
/**
import edu.duke.*;
public class part1 {
public int findStopCodon(String dna,int startIndex,String stopcodon ){
int currIndex = dna.indexOf(stopcodon,startIndex+3);
while(currIndex!=-1){
if((currIndex-startIndex)%3==0){
return currIndex;
}
else{
currIndex = dna.indexOf(stopcodon,currIndex+1);
}
}
return dna.length();
}
public String findGene(String dna ){
int startIndex = dna.indexOf("ATG");
if(startIndex==-1){
return "" ;
}
int indexTAA = findStopCodon(dna,startIndex,"TAA");
int indexTAG = findStopCodon(dna,startIndex,"TAG");
int indexTGA = findStopCodon(dna,startIndex,"TGA");
int temp= Math.min(indexTAA,indexTAG);
int firstStopCodon = Math.min(temp,indexTGA);
if(firstStopCodon==dna.length()){
return "";
}
String resultString = dna.substring(startIndex,firstStopCodon+3);//line 40
return resultString;
}
public StorageResource getAllGene(String dna){
StorageResource geneList = new StorageResource();
int startIndex = 0;
while(true){
String currentGene = findGene(dna);//line 50
if(currentGene.length()==0){
break;
}else{
geneList.add(currentGene);
startIndex = dna.indexOf(currentGene,startIndex)+currentGene.length();
dna = dna.substring(startIndex,dna.length());
}
}
return geneList;
}
public double cgRatio(String dna){
StorageResource gene = getAllGene(dna);
double cgratio = 0;
for(String g: gene.data()){
int cOcc=0,oOcc=0,startIndexC=0,startIndexO=0;
double count=0;
while(cOcc!=-1||oOcc!=-1){
cOcc=dna.indexOf("C",startIndexC);
if(cOcc!=-1){
count++;
startIndexC=cOcc+1;
}
oOcc=dna.indexOf("G",startIndexO);
if(oOcc!=-1){
count++;
startIndexO=oOcc+1;
}
}
double dnaLength = dna.length();
cgratio = count/dnaLength;
return cgratio;
}
return cgratio;
}
public int countCTG(String dna){
int count =0, ctgOcc =0,startIndexCTG=0;
while (ctgOcc!=-1){
ctgOcc=dna.indexOf("CTG",startIndexCTG);
if(ctgOcc!=-1){
count++;
startIndexCTG=ctgOcc+3;
}
}
return count;
}
public void processGenes(StorageResource sr){
int count = 0,countCg = 0,countgene=1;
int temp=0;
for( String g: sr.data()){
StorageResource geneList=getAllGene(g); //line 116
for(String gList:geneList.data()){
System.out.println("gene "+countgene +" cointained is "+gList);
if(gList.length()>60){
System.out.println("The gene with a length longer then 60 is "+gList);
count++;
}
if(temp<gList.length()){
temp=gList.length();
}
else{
temp=temp;
}
countgene++;
double cgRatio=cgRatio(gList);
if( cgRatio>0.35)
{
countCg++;
System.out.println("the "+countCg+" cg ratio is "+cgRatio);
}
}
int numberOfCTG=countCTG(g);
System.out.println("the number of time CTG appears is "+numberOfCTG);
}
System.out.println("the number of string with length longer then 60 is "+count);
System.out.println("the no of string with cgratio greater then 0.35 "+countCg);
System.out.println("the longest length of gene in the dna is "+temp);
}
public void testProcessGene(){
FileResource fr=new FileResource("reviewTest.fa");
String dna1 = fr.asString();
String dna = dna1.toUpperCase();
System.out.println(dna);
StorageResource sr= new StorageResource();
sr.add(dna);
processGenes(sr);//line 152
}
}
// reviewTest.fa=https://users.cs.duke.edu/~rodger/GRch38dnapart.fa
//please help me why my answere is not correct where is the bug in my code
// I am getting total no of gene 34 and the answere is 69 help me
//Total number of strings with length greater than 60 : 23(I am getting 11)
//Total number of strings with CG Ratio greater than 0.35 : 40(i am getting 25)
//Longest gene length is : 489 (i got this right)
//Total number of occurances of CTG is : 224 (i got this right)
please help me
TOTAL GENES = 69
Total number of strings with length greater than 60 : 23
Total number of strings with CG Ratio greater than 0.35 : 40
Longest gene length is : 489
Total number of occurances of CTG is : 224Cheers!
Thanks! All correct. Actually I was stuck at the longest gene length.
can i get week 3 practice quiz and final quiz answer ?
TOTAL GENES = 69
Total number of strings with length greater than 60 : 23
Total number of strings with CG Ratio greater than 0.35 : 40
Longest gene length is : 489
Total number of occurances of CTG is : 224Cheers!
Can I get your code bro?
Week 3 assignment answers please
How many genes are there in the file brca1line.fa?
Ans 1
How many genes are there in the file brca1line.fa that are longer than 60?
Ans 1
How many genes are there in the file brca1line.fa that have a C-G-ratio greater than 0.35?
Ans 1
How many genes are there in the file brca1line.fa?
Ans 1
How many genes are there in the file brca1line.fa that are longer than 60?
Ans 1
How many genes are there in the file brca1line.fa that have a C-G-ratio greater than 0.35?
Ans 1
Right one
TOTAL GENES = 69
Total number of strings with length greater than 60 : 23
Total number of strings with CG Ratio greater than 0.35 : 40
Longest gene length is : 489
Total number of occurances of CTG is : 224Cheers!
Hey, can you please send the code...
TOTAL GENES = 69
Total number of strings with length greater than 60 : 23
Total number of strings with CG Ratio greater than 0.35 : 40
Longest gene length is : 489
Total number of occurances of CTG is : 224Cheers!
Wrong answers
I don't understand why the answers are all ones, I'm finding some valid genes with my code and having them verified with my bare eyes.