Created
May 30, 2024 05:37
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error log file from CI run PR_2608
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Begin genesis.sh at Thu May 30 05:17:33 UTC 2024 | |
+ genesis.sh[7]: source /work2/noaa/stmp/CI/HERCULES/2608/gfs/ush/load_fv3gfs_modules.sh | |
++ load_fv3gfs_modules.sh[4]: [[ NO == \N\O ]] | |
++ load_fv3gfs_modules.sh[5]: echo 'Loading modules quietly...' | |
Loading modules quietly... | |
++ load_fv3gfs_modules.sh[6]: set +x | |
Running "module reset". Resetting modules to system default. The following $MODULEPATH directories have been removed: None | |
Currently Loaded Modules: | |
1) contrib/0.1 41) grib-util/1.3.0 | |
2) intel-oneapi-compilers/2023.1.0 42) g2tmpl/1.10.2 | |
3) stack-intel/2021.9.0 43) gsi-ncdiag/1.1.2 | |
4) intel-oneapi-mpi/2021.9.0 44) crtm-fix/2.4.0.1_emc | |
5) stack-intel-oneapi-mpi/2021.9.0 45) git-lfs/3.1.2 | |
6) intel-oneapi-mkl/2023.1.0 46) crtm/2.4.0.1 | |
7) zlib/1.2.13 47) openblas/0.3.24 | |
8) pigz/2.7 48) py-setuptools/63.4.3 | |
9) zstd/1.5.2 49) py-numpy/1.23.4 | |
10) tar/1.34 50) bufr/11.7.0 | |
11) gettext/0.21.1 51) gmake/4.2.1 | |
12) libxcrypt/4.4.35 52) wgrib2/2.0.8 | |
13) sqlite/3.43.2 53) py-f90nml/1.4.3 | |
14) util-linux-uuid/2.38.1 54) py-cftime/1.0.3.4 | |
15) python/3.11.6 55) py-netcdf4/1.5.8 | |
16) libjpeg/2.1.0 56) libyaml/0.2.5 | |
17) jasper/2.0.32 57) py-pyyaml/6.0 | |
18) libpng/1.6.37 58) py-markupsafe/2.1.3 | |
19) openjpeg/2.3.1 59) py-jinja2/3.1.2 | |
20) eccodes/2.32.0 60) py-bottleneck/1.3.7 | |
21) fftw/3.3.10 61) py-numexpr/2.8.4 | |
22) nghttp2/1.57.0 62) py-et-xmlfile/1.0.1 | |
23) curl/8.4.0 63) py-openpyxl/3.1.2 | |
24) proj/9.2.1 64) py-pytz/2023.3 | |
25) udunits/2.2.28 65) py-pyxlsb/1.0.10 | |
26) cdo/2.2.0 66) py-xlrd/2.0.1 | |
27) hdf5/1.14.0 67) py-xlsxwriter/3.1.7 | |
28) snappy/1.1.10 68) py-xlwt/1.3.0 | |
29) c-blosc/1.21.5 69) py-pandas/1.5.3 | |
30) netcdf-c/4.9.2 70) py-six/1.16.0 | |
31) netcdf-fortran/4.6.1 71) py-python-dateutil/2.8.2 | |
32) antlr/2.7.7 72) g2c/1.6.4 | |
33) gsl/2.7.1 73) netcdf-cxx4/4.3.1 | |
34) nco/5.0.6 74) met/9.1.3 | |
35) bacio/2.4.1 75) metplus/3.1.1 | |
36) w3emc/2.10.0 76) py-packaging/23.1 | |
37) prod_util/2.1.1 77) py-xarray/2023.7.0 | |
38) g2/3.4.5 78) prepobs/1.0.1 | |
39) sp/2.5.0 79) fit2obs/1.1.1 | |
40) ip/4.3.0 80) module_base.hercules | |
+ genesis.sh[8]: status=0 | |
+ genesis.sh[9]: (( status != 0 )) | |
+ genesis.sh[11]: export job=genesis | |
+ genesis.sh[11]: job=genesis | |
+ genesis.sh[12]: export jobid=genesis.494904 | |
+ genesis.sh[12]: jobid=genesis.494904 | |
+ genesis.sh[17]: /work2/noaa/stmp/CI/HERCULES/2608/gfs/jobs/JGFS_ATMOS_CYCLONE_GENESIS | |
Begin JGFS_ATMOS_CYCLONE_GENESIS at Thu May 30 05:17:35 UTC 2024 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[4]: source /work2/noaa/stmp/CI/HERCULES/2608/gfs/ush/jjob_header.sh -e genesis -c 'base genesis' | |
++ jjob_header.sh[44]: OPTIND=1 | |
++ jjob_header.sh[45]: getopts c:e: option | |
++ jjob_header.sh[46]: case "${option}" in | |
++ jjob_header.sh[48]: env_job=genesis | |
++ jjob_header.sh[45]: getopts c:e: option | |
++ jjob_header.sh[46]: case "${option}" in | |
++ jjob_header.sh[47]: read -ra configs | |
++ jjob_header.sh[45]: getopts c:e: option | |
++ jjob_header.sh[59]: shift 4 | |
++ jjob_header.sh[61]: [[ -z genesis ]] | |
++ jjob_header.sh[69]: export DATA=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/genesis.494904 | |
++ jjob_header.sh[69]: DATA=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/genesis.494904 | |
++ jjob_header.sh[70]: [[ YES == \Y\E\S ]] | |
++ jjob_header.sh[71]: rm -rf /work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/genesis.494904 | |
++ jjob_header.sh[73]: mkdir -p /work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/genesis.494904 | |
++ jjob_header.sh[74]: cd /work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/genesis.494904 | |
++ jjob_header.sh[80]: export cycle=t12z | |
++ jjob_header.sh[80]: cycle=t12z | |
++ jjob_header.sh[81]: setpdy.sh | |
sed: can't read /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/date/t12z: No such file or directory | |
completed cleanly | |
completed cleanly | |
Source PDY script to export PDYm7, ..., PDY, ..., PDYp7 variables. | |
++ jjob_header.sh[82]: source ./PDY | |
+++ PDY[1]: export PDYm7=20210316 | |
+++ PDY[1]: PDYm7=20210316 | |
+++ PDY[2]: export PDYm6=20210317 | |
+++ PDY[2]: PDYm6=20210317 | |
+++ PDY[3]: export PDYm5=20210318 | |
+++ PDY[3]: PDYm5=20210318 | |
+++ PDY[4]: export PDYm4=20210319 | |
+++ PDY[4]: PDYm4=20210319 | |
+++ PDY[5]: export PDYm3=20210320 | |
+++ PDY[5]: PDYm3=20210320 | |
+++ PDY[6]: export PDYm2=20210321 | |
+++ PDY[6]: PDYm2=20210321 | |
+++ PDY[7]: export PDYm1=20210322 | |
+++ PDY[7]: PDYm1=20210322 | |
+++ PDY[8]: export PDY=20210323 | |
+++ PDY[8]: PDY=20210323 | |
+++ PDY[9]: export PDYp1=20210324 | |
+++ PDY[9]: PDYp1=20210324 | |
+++ PDY[10]: export PDYp2=20210325 | |
+++ PDY[10]: PDYp2=20210325 | |
+++ PDY[11]: export PDYp3=20210326 | |
+++ PDY[11]: PDYp3=20210326 | |
+++ PDY[12]: export PDYp4=20210327 | |
+++ PDY[12]: PDYp4=20210327 | |
+++ PDY[13]: export PDYp5=20210328 | |
+++ PDY[13]: PDYp5=20210328 | |
+++ PDY[14]: export PDYp6=20210329 | |
+++ PDY[14]: PDYp6=20210329 | |
+++ PDY[15]: export PDYp7=20210330 | |
+++ PDY[15]: PDYp7=20210330 | |
++ jjob_header.sh[88]: export pid=496076 | |
++ jjob_header.sh[88]: pid=496076 | |
++ jjob_header.sh[89]: export pgmout=OUTPUT.496076 | |
++ jjob_header.sh[89]: pgmout=OUTPUT.496076 | |
++ jjob_header.sh[90]: export pgmerr=errfile | |
++ jjob_header.sh[90]: pgmerr=errfile | |
++ jjob_header.sh[96]: export EXPDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c | |
++ jjob_header.sh[96]: EXPDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c | |
++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
++ jjob_header.sh[98]: source /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.base | |
+++ config.base[6]: echo 'BEGIN: config.base' | |
BEGIN: config.base | |
+++ config.base[9]: export machine=HERCULES | |
+++ config.base[9]: machine=HERCULES | |
+++ config.base[12]: export RUN_ENVIR=emc | |
+++ config.base[12]: RUN_ENVIR=emc | |
+++ config.base[15]: export ACCOUNT=nems | |
+++ config.base[15]: ACCOUNT=nems | |
+++ config.base[16]: export QUEUE=batch | |
+++ config.base[16]: QUEUE=batch | |
+++ config.base[17]: export QUEUE_SERVICE=batch | |
+++ config.base[17]: QUEUE_SERVICE=batch | |
+++ config.base[18]: export PARTITION_BATCH=hercules | |
+++ config.base[18]: PARTITION_BATCH=hercules | |
+++ config.base[19]: export PARTITION_SERVICE=service | |
+++ config.base[19]: PARTITION_SERVICE=service | |
+++ config.base[22]: export HPSS_PROJECT=emc-global | |
+++ config.base[22]: HPSS_PROJECT=emc-global | |
+++ config.base[25]: export HOMEgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs | |
+++ config.base[25]: HOMEgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs | |
+++ config.base[26]: export EXECgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/exec | |
+++ config.base[26]: EXECgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/exec | |
+++ config.base[27]: export FIXgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix | |
+++ config.base[27]: FIXgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix | |
+++ config.base[28]: export PARMgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/parm | |
+++ config.base[28]: PARMgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/parm | |
+++ config.base[29]: export SCRgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/scripts | |
+++ config.base[29]: SCRgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/scripts | |
+++ config.base[30]: export USHgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/ush | |
+++ config.base[30]: USHgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/ush | |
+++ config.base[32]: export FIXam=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/am | |
+++ config.base[32]: FIXam=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/am | |
+++ config.base[33]: export FIXaer=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/aer | |
+++ config.base[33]: FIXaer=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/aer | |
+++ config.base[34]: export FIXcpl=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/cpl | |
+++ config.base[34]: FIXcpl=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/cpl | |
+++ config.base[35]: export FIXlut=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/lut | |
+++ config.base[35]: FIXlut=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/lut | |
+++ config.base[36]: export FIXorog=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/orog | |
+++ config.base[36]: FIXorog=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/orog | |
+++ config.base[37]: export FIXcice=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/cice | |
+++ config.base[37]: FIXcice=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/cice | |
+++ config.base[38]: export FIXmom=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/mom6 | |
+++ config.base[38]: FIXmom=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/mom6 | |
+++ config.base[39]: export FIXreg2grb2=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/reg2grb2 | |
+++ config.base[39]: FIXreg2grb2=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/reg2grb2 | |
+++ config.base[40]: export FIXugwd=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/ugwd | |
+++ config.base[40]: FIXugwd=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/ugwd | |
+++ config.base[41]: export FIXgdas=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/gdas | |
+++ config.base[41]: FIXgdas=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/gdas | |
+++ config.base[46]: export PACKAGEROOT=/work/noaa/global/glopara/nwpara | |
+++ config.base[46]: PACKAGEROOT=/work/noaa/global/glopara/nwpara | |
+++ config.base[47]: export COMROOT=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT | |
+++ config.base[47]: COMROOT=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT | |
+++ config.base[48]: export COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat | |
+++ config.base[48]: COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat | |
+++ config.base[49]: export DMPDIR=/work/noaa/rstprod/dump | |
+++ config.base[49]: DMPDIR=/work/noaa/rstprod/dump | |
+++ config.base[50]: export BASE_CPLIC=/work/noaa/global/glopara/data/ICSDIR/prototype_ICs | |
+++ config.base[50]: BASE_CPLIC=/work/noaa/global/glopara/data/ICSDIR/prototype_ICs | |
+++ config.base[54]: export COMINecmwf=/work/noaa/global/glopara/data/external_gempak/ecmwf | |
+++ config.base[54]: COMINecmwf=/work/noaa/global/glopara/data/external_gempak/ecmwf | |
+++ config.base[55]: export COMINnam=/work/noaa/global/glopara/data/external_gempak/nam | |
+++ config.base[55]: COMINnam=/work/noaa/global/glopara/data/external_gempak/nam | |
+++ config.base[56]: export COMINukmet=/work/noaa/global/glopara/data/external_gempak/ukmet | |
+++ config.base[56]: COMINukmet=/work/noaa/global/glopara/data/external_gempak/ukmet | |
+++ config.base[59]: export HOMEDIR=/work/noaa/global/mterry | |
+++ config.base[59]: HOMEDIR=/work/noaa/global/mterry | |
+++ config.base[60]: export STMP=/work/noaa/stmp/mterry/HERCULES | |
+++ config.base[60]: STMP=/work/noaa/stmp/mterry/HERCULES | |
+++ config.base[61]: export PTMP=/work/noaa/stmp/mterry/HERCULES | |
+++ config.base[61]: PTMP=/work/noaa/stmp/mterry/HERCULES | |
+++ config.base[62]: export NOSCRUB=/work/noaa/global/mterry | |
+++ config.base[62]: NOSCRUB=/work/noaa/global/mterry | |
+++ config.base[65]: export BASE_GIT=/work/noaa/global/glopara/git_rocky9 | |
+++ config.base[65]: BASE_GIT=/work/noaa/global/glopara/git_rocky9 | |
+++ config.base[68]: export DO_GOES=NO | |
+++ config.base[68]: DO_GOES=NO | |
+++ config.base[69]: export DO_BUFRSND=NO | |
+++ config.base[69]: DO_BUFRSND=NO | |
+++ config.base[70]: export DO_GEMPAK=NO | |
+++ config.base[70]: DO_GEMPAK=NO | |
+++ config.base[71]: export DO_AWIPS=NO | |
+++ config.base[71]: DO_AWIPS=NO | |
+++ config.base[72]: export DO_NPOESS=NO | |
+++ config.base[72]: DO_NPOESS=NO | |
+++ config.base[73]: export DO_TRACKER=YES | |
+++ config.base[73]: DO_TRACKER=YES | |
+++ config.base[74]: export DO_GENESIS=YES | |
+++ config.base[74]: DO_GENESIS=YES | |
+++ config.base[75]: export DO_GENESIS_FSU=NO | |
+++ config.base[75]: DO_GENESIS_FSU=NO | |
+++ config.base[76]: export DO_VERFOZN=YES | |
+++ config.base[76]: DO_VERFOZN=YES | |
+++ config.base[77]: export DO_VERFRAD=YES | |
+++ config.base[77]: DO_VERFRAD=YES | |
+++ config.base[78]: export DO_VMINMON=YES | |
+++ config.base[78]: DO_VMINMON=YES | |
+++ config.base[79]: export DO_MOS=NO | |
+++ config.base[79]: DO_MOS=NO | |
+++ config.base[85]: export REALTIME=YES | |
+++ config.base[85]: REALTIME=YES | |
+++ config.base[88]: export MODE=forecast-only | |
+++ config.base[88]: MODE=forecast-only | |
+++ config.base[97]: export FIXgsi=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/gsi | |
+++ config.base[97]: FIXgsi=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/gsi | |
+++ config.base[98]: export HOMEpost=/work2/noaa/stmp/CI/HERCULES/2608/gfs | |
+++ config.base[98]: HOMEpost=/work2/noaa/stmp/CI/HERCULES/2608/gfs | |
+++ config.base[99]: export HOMEobsproc=/work/noaa/global/glopara/git_rocky9/obsproc/v1.1.2 | |
+++ config.base[99]: HOMEobsproc=/work/noaa/global/glopara/git_rocky9/obsproc/v1.1.2 | |
+++ config.base[102]: export 'NCP=/bin/cp -p' | |
+++ config.base[102]: NCP='/bin/cp -p' | |
+++ config.base[103]: export NMV=/bin/mv | |
+++ config.base[103]: NMV=/bin/mv | |
+++ config.base[104]: export 'NLN=/bin/ln -sf' | |
+++ config.base[104]: NLN='/bin/ln -sf' | |
+++ config.base[105]: export VERBOSE=YES | |
+++ config.base[105]: VERBOSE=YES | |
+++ config.base[106]: export KEEPDATA=NO | |
+++ config.base[106]: KEEPDATA=NO | |
+++ config.base[107]: export DEBUG_POSTSCRIPT=NO | |
+++ config.base[107]: DEBUG_POSTSCRIPT=NO | |
+++ config.base[108]: export CHGRP_RSTPROD=YES | |
+++ config.base[108]: CHGRP_RSTPROD=YES | |
+++ config.base[109]: export 'CHGRP_CMD=chgrp rstprod' | |
+++ config.base[109]: CHGRP_CMD='chgrp rstprod' | |
+++ config.base[110]: export NCDUMP=/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/netcdf-c-4.9.2-tslbcfy/bin/ncdump | |
+++ config.base[110]: NCDUMP=/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/netcdf-c-4.9.2-tslbcfy/bin/ncdump | |
+++ config.base[111]: export NCLEN=/work2/noaa/stmp/CI/HERCULES/2608/gfs/ush/getncdimlen | |
+++ config.base[111]: NCLEN=/work2/noaa/stmp/CI/HERCULES/2608/gfs/ush/getncdimlen | |
+++ config.base[114]: export BASE_ENV=/work2/noaa/stmp/CI/HERCULES/2608/gfs/env | |
+++ config.base[114]: BASE_ENV=/work2/noaa/stmp/CI/HERCULES/2608/gfs/env | |
+++ config.base[115]: export BASE_JOB=/work2/noaa/stmp/CI/HERCULES/2608/gfs/jobs/rocoto | |
+++ config.base[115]: BASE_JOB=/work2/noaa/stmp/CI/HERCULES/2608/gfs/jobs/rocoto | |
+++ config.base[118]: export SDATE=2021032312 | |
+++ config.base[118]: SDATE=2021032312 | |
+++ config.base[119]: export EDATE=2021032312 | |
+++ config.base[119]: EDATE=2021032312 | |
+++ config.base[120]: export EXP_WARM_START=.false. | |
+++ config.base[120]: EXP_WARM_START=.false. | |
+++ config.base[121]: export assim_freq=6 | |
+++ config.base[121]: assim_freq=6 | |
+++ config.base[122]: export PSLOT=C48_ATM_94b5af9c | |
+++ config.base[122]: PSLOT=C48_ATM_94b5af9c | |
+++ config.base[123]: export EXPDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c | |
+++ config.base[123]: EXPDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c | |
+++ config.base[124]: export ROTDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c | |
+++ config.base[124]: ROTDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c | |
+++ config.base[125]: export ROTDIR_DUMP=YES | |
+++ config.base[125]: ROTDIR_DUMP=YES | |
+++ config.base[126]: export DUMP_SUFFIX= | |
+++ config.base[126]: DUMP_SUFFIX= | |
+++ config.base[127]: [[ 2021032312 -ge 2019092100 ]] | |
+++ config.base[127]: [[ 2021032312 -le 2019110700 ]] | |
+++ config.base[130]: export DATAROOT=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c | |
+++ config.base[130]: DATAROOT=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c | |
+++ config.base[131]: export RUNDIR=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c | |
+++ config.base[131]: RUNDIR=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c | |
+++ config.base[132]: export ARCDIR=/work/noaa/global/mterry/archive/C48_ATM_94b5af9c | |
+++ config.base[132]: ARCDIR=/work/noaa/global/mterry/archive/C48_ATM_94b5af9c | |
+++ config.base[133]: export ATARDIR=/work/noaa/global/mterry/archive_rotdir/C48_ATM_94b5af9c | |
+++ config.base[133]: ATARDIR=/work/noaa/global/mterry/archive_rotdir/C48_ATM_94b5af9c | |
+++ config.base[136]: export envir=prod | |
+++ config.base[136]: envir=prod | |
+++ config.base[137]: export NET=gfs | |
+++ config.base[137]: NET=gfs | |
+++ config.base[138]: export RUN=gfs | |
+++ config.base[138]: RUN=gfs | |
+++ config.base[144]: source /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.com | |
++++ config.com[4]: echo 'BEGIN: config.com' | |
BEGIN: config.com | |
++++ config.com[37]: [[ emc == \n\c\o ]] | |
++++ config.com[41]: COM_OBS_TMPL='${ROTDIR}/${RUN}.${YMD}/${HH}/obs' | |
++++ config.com[42]: COM_RTOFS_TMPL='${DMPDIR}' | |
++++ config.com[44]: declare -rx COM_OBS_TMPL COM_RTOFS_TMPL | |
++++ config.com[45]: declare -rx 'COM_OBSDMP_TMPL=${DMPDIR}/${DUMP}${DUMP_SUFFIX}.${YMD}/${HH}/atmos' | |
++++ config.com[47]: COM_BASE='${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}' | |
++++ config.com[49]: declare -rx 'COM_TOP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}' | |
++++ config.com[51]: declare -rx 'COM_CONF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/conf' | |
++++ config.com[52]: declare -rx 'COM_ATMOS_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/input' | |
++++ config.com[53]: declare -rx 'COM_ATMOS_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/restart' | |
++++ config.com[54]: declare -rx 'COM_ATMOS_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/atmos' | |
++++ config.com[55]: declare -rx 'COM_SNOW_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow' | |
++++ config.com[56]: declare -rx 'COM_ATMOS_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/history' | |
++++ config.com[57]: declare -rx 'COM_ATMOS_MASTER_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/master' | |
++++ config.com[58]: declare -rx 'COM_ATMOS_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2' | |
++++ config.com[59]: declare -rx 'COM_ATMOS_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2/${GRID}' | |
++++ config.com[60]: declare -rx 'COM_ATMOS_BUFR_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr' | |
++++ config.com[61]: declare -rx 'COM_ATMOS_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}' | |
++++ config.com[62]: declare -rx 'COM_ATMOS_GENESIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital' | |
++++ config.com[63]: declare -rx 'COM_ATMOS_TRACK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks' | |
++++ config.com[64]: declare -rx 'COM_ATMOS_GOES_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/goes_sim' | |
++++ config.com[65]: declare -rx 'COM_ATMOS_IMAGERY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/imagery' | |
++++ config.com[66]: declare -rx 'COM_ATMOS_OZNMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon' | |
++++ config.com[67]: declare -rx 'COM_ATMOS_RADMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/radmon' | |
++++ config.com[68]: declare -rx 'COM_ATMOS_MINMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/minmon' | |
++++ config.com[69]: declare -rx 'COM_ATMOS_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/wmo' | |
++++ config.com[71]: declare -rx 'COM_WAVE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/restart' | |
++++ config.com[72]: declare -rx 'COM_WAVE_PREP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/prep' | |
++++ config.com[73]: declare -rx 'COM_WAVE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/history' | |
++++ config.com[74]: declare -rx 'COM_WAVE_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gridded' | |
++++ config.com[75]: declare -rx 'COM_WAVE_STATION_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/station' | |
++++ config.com[76]: declare -rx 'COM_WAVE_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gempak' | |
++++ config.com[77]: declare -rx 'COM_WAVE_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/wmo' | |
++++ config.com[79]: declare -rx 'COM_OCEAN_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/history' | |
++++ config.com[80]: declare -rx 'COM_OCEAN_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/restart' | |
++++ config.com[81]: declare -rx 'COM_OCEAN_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/input' | |
++++ config.com[82]: declare -rx 'COM_OCEAN_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ocean' | |
++++ config.com[83]: declare -rx 'COM_OCEAN_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/netcdf' | |
++++ config.com[84]: declare -rx 'COM_OCEAN_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2' | |
++++ config.com[85]: declare -rx 'COM_OCEAN_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}' | |
++++ config.com[87]: declare -rx 'COM_ICE_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ice' | |
++++ config.com[88]: declare -rx 'COM_ICE_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/input' | |
++++ config.com[89]: declare -rx 'COM_ICE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/history' | |
++++ config.com[90]: declare -rx 'COM_ICE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/restart' | |
++++ config.com[91]: declare -rx 'COM_ICE_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/netcdf' | |
++++ config.com[92]: declare -rx 'COM_ICE_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2' | |
++++ config.com[93]: declare -rx 'COM_ICE_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}' | |
++++ config.com[95]: declare -rx 'COM_CHEM_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/chem/history' | |
++++ config.com[96]: declare -rx 'COM_CHEM_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem' | |
++++ config.com[98]: declare -rx 'COM_MED_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/med/restart' | |
+++ config.base[147]: export 'ERRSCRIPT=eval [[ $err = 0 ]]' | |
+++ config.base[147]: ERRSCRIPT='eval [[ $err = 0 ]]' | |
+++ config.base[148]: export LOGSCRIPT= | |
+++ config.base[148]: LOGSCRIPT= | |
+++ config.base[151]: export 'REDOUT=1>' | |
+++ config.base[151]: REDOUT='1>' | |
+++ config.base[152]: export 'REDERR=2>' | |
+++ config.base[152]: REDERR='2>' | |
+++ config.base[154]: export SENDECF=NO | |
+++ config.base[154]: SENDECF=NO | |
+++ config.base[155]: export SENDSDM=NO | |
+++ config.base[155]: SENDSDM=NO | |
+++ config.base[156]: export SENDDBN_NTC=NO | |
+++ config.base[156]: SENDDBN_NTC=NO | |
+++ config.base[157]: export SENDDBN=NO | |
+++ config.base[157]: SENDDBN=NO | |
+++ config.base[158]: export DBNROOT=/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/prod-util-2.1.1-ddlo2cq/fakedbn | |
+++ config.base[158]: DBNROOT=/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/prod-util-2.1.1-ddlo2cq/fakedbn | |
+++ config.base[161]: export APP=ATM | |
+++ config.base[161]: APP=ATM | |
+++ config.base[163]: shopt -s extglob | |
+++ config.base[165]: case "${RUN}" in | |
+++ config.base[172]: shopt -u extglob | |
+++ config.base[175]: export DO_ATM=YES | |
+++ config.base[175]: DO_ATM=YES | |
+++ config.base[176]: export DO_COUPLED=NO | |
+++ config.base[176]: DO_COUPLED=NO | |
+++ config.base[177]: export DO_WAVE=NO | |
+++ config.base[177]: DO_WAVE=NO | |
+++ config.base[178]: export DO_OCN=NO | |
+++ config.base[178]: DO_OCN=NO | |
+++ config.base[179]: export DO_ICE=NO | |
+++ config.base[179]: DO_ICE=NO | |
+++ config.base[180]: export DO_AERO=NO | |
+++ config.base[180]: DO_AERO=NO | |
+++ config.base[181]: export AERO_FCST_CDUMP= | |
+++ config.base[181]: AERO_FCST_CDUMP= | |
+++ config.base[182]: export AERO_ANL_CDUMP= | |
+++ config.base[182]: AERO_ANL_CDUMP= | |
+++ config.base[183]: export WAVE_CDUMP= | |
+++ config.base[183]: WAVE_CDUMP= | |
+++ config.base[184]: export DOBNDPNT_WAVE=NO | |
+++ config.base[184]: DOBNDPNT_WAVE=NO | |
+++ config.base[185]: export DOIBP_WAV=NO | |
+++ config.base[185]: DOIBP_WAV=NO | |
+++ config.base[186]: export FRAC_GRID=.true. | |
+++ config.base[186]: FRAC_GRID=.true. | |
+++ config.base[187]: export DO_NEST=NO | |
+++ config.base[187]: DO_NEST=NO | |
+++ config.base[188]: [[ NO == \Y\E\S ]] | |
+++ config.base[192]: export ntiles=6 | |
+++ config.base[192]: ntiles=6 | |
+++ config.base[196]: export OPS_RES=C768 | |
+++ config.base[196]: OPS_RES=C768 | |
+++ config.base[199]: export LEVS=128 | |
+++ config.base[199]: LEVS=128 | |
+++ config.base[200]: export CASE=C48 | |
+++ config.base[200]: CASE=C48 | |
+++ config.base[201]: export CASE_ENS=@CASEENS@ | |
+++ config.base[201]: CASE_ENS=@CASEENS@ | |
+++ config.base[202]: export OCNRES=500 | |
+++ config.base[202]: OCNRES=500 | |
+++ config.base[203]: export ICERES=500 | |
+++ config.base[203]: ICERES=500 | |
+++ config.base[206]: case "${CASE}" in | |
+++ config.base[208]: export waveGRD=uglo_100km | |
+++ config.base[208]: waveGRD=uglo_100km | |
+++ config.base[225]: case "${APP}" in | |
+++ config.base[266]: [[ gfs =~ gdas ]] | |
+++ config.base[269]: [[ gfs =~ gfs ]] | |
+++ config.base[270]: export FHCYC=24 | |
+++ config.base[270]: FHCYC=24 | |
+++ config.base[274]: export FHMIN=0 | |
+++ config.base[274]: FHMIN=0 | |
+++ config.base[275]: export FHMAX=9 | |
+++ config.base[275]: FHMAX=9 | |
+++ config.base[276]: export FHOUT=3 | |
+++ config.base[276]: FHOUT=3 | |
+++ config.base[277]: export FHOUT_OCNICE=3 | |
+++ config.base[277]: FHOUT_OCNICE=3 | |
+++ config.base[280]: export EUPD_CYC=gdas | |
+++ config.base[280]: EUPD_CYC=gdas | |
+++ config.base[283]: export gfs_cyc=1 | |
+++ config.base[283]: gfs_cyc=1 | |
+++ config.base[286]: export FHMIN_GFS=0 | |
+++ config.base[286]: FHMIN_GFS=0 | |
+++ config.base[287]: export FHMAX_GFS=120 | |
+++ config.base[287]: FHMAX_GFS=120 | |
+++ config.base[288]: export FHOUT_GFS=3 | |
+++ config.base[288]: FHOUT_GFS=3 | |
+++ config.base[289]: export FHMAX_HF_GFS=0 | |
+++ config.base[289]: FHMAX_HF_GFS=0 | |
+++ config.base[290]: export FHOUT_HF_GFS=1 | |
+++ config.base[290]: FHOUT_HF_GFS=1 | |
+++ config.base[291]: export FHOUT_OCNICE_GFS=6 | |
+++ config.base[291]: FHOUT_OCNICE_GFS=6 | |
+++ config.base[292]: export FHMIN_WAV=0 | |
+++ config.base[292]: FHMIN_WAV=0 | |
+++ config.base[293]: export FHOUT_WAV=3 | |
+++ config.base[293]: FHOUT_WAV=3 | |
+++ config.base[294]: export FHMAX_HF_WAV=120 | |
+++ config.base[294]: FHMAX_HF_WAV=120 | |
+++ config.base[295]: export FHOUT_HF_WAV=1 | |
+++ config.base[295]: FHOUT_HF_WAV=1 | |
+++ config.base[296]: export FHMAX_WAV=9 | |
+++ config.base[296]: FHMAX_WAV=9 | |
+++ config.base[297]: export FHMAX_WAV_GFS=120 | |
+++ config.base[297]: FHMAX_WAV_GFS=120 | |
+++ config.base[298]: (( gfs_cyc != 0 )) | |
+++ config.base[299]: export STEP_GFS=24 | |
+++ config.base[299]: STEP_GFS=24 | |
+++ config.base[304]: export ILPOST=1 | |
+++ config.base[304]: ILPOST=1 | |
+++ config.base[305]: (( FHMAX_HF_GFS < 120 )) | |
+++ config.base[306]: export ILPOST=3 | |
+++ config.base[306]: ILPOST=3 | |
+++ config.base[310]: export restart_interval_gfs=12 | |
+++ config.base[310]: restart_interval_gfs=12 | |
+++ config.base[315]: export QUILTING=.true. | |
+++ config.base[315]: QUILTING=.true. | |
+++ config.base[316]: export OUTPUT_GRID=gaussian_grid | |
+++ config.base[316]: OUTPUT_GRID=gaussian_grid | |
+++ config.base[317]: export WRITE_DOPOST=.true. | |
+++ config.base[317]: WRITE_DOPOST=.true. | |
+++ config.base[318]: export WRITE_NSFLIP=.true. | |
+++ config.base[318]: WRITE_NSFLIP=.true. | |
+++ config.base[321]: export DOIAU=YES | |
+++ config.base[321]: DOIAU=YES | |
+++ config.base[322]: export IAUFHRS=3,6,9 | |
+++ config.base[322]: IAUFHRS=3,6,9 | |
+++ config.base[323]: export IAU_FHROT=3 | |
+++ config.base[323]: IAU_FHROT=3 | |
+++ config.base[324]: export IAU_DELTHRS=6 | |
+++ config.base[324]: IAU_DELTHRS=6 | |
+++ config.base[325]: export IAU_OFFSET=6 | |
+++ config.base[325]: IAU_OFFSET=6 | |
+++ config.base[326]: export DOIAU_ENKF=YES | |
+++ config.base[326]: DOIAU_ENKF=YES | |
+++ config.base[327]: export IAUFHRS_ENKF=3,6,9 | |
+++ config.base[327]: IAUFHRS_ENKF=3,6,9 | |
+++ config.base[328]: export IAU_DELTHRS_ENKF=6 | |
+++ config.base[328]: IAU_DELTHRS_ENKF=6 | |
+++ config.base[331]: export lobsdiag_forenkf=.true. | |
+++ config.base[331]: lobsdiag_forenkf=.true. | |
+++ config.base[339]: export imp_physics=8 | |
+++ config.base[339]: imp_physics=8 | |
+++ config.base[343]: export DO_JEDIATMVAR=NO | |
+++ config.base[343]: DO_JEDIATMVAR=NO | |
+++ config.base[344]: export DO_JEDIATMENS=NO | |
+++ config.base[344]: DO_JEDIATMENS=NO | |
+++ config.base[345]: export DO_JEDIOCNVAR=NO | |
+++ config.base[345]: DO_JEDIOCNVAR=NO | |
+++ config.base[346]: export DO_JEDISNOWDA=NO | |
+++ config.base[346]: DO_JEDISNOWDA=NO | |
+++ config.base[347]: export DO_MERGENSST=NO | |
+++ config.base[347]: DO_MERGENSST=NO | |
+++ config.base[350]: export DOHYBVAR=@DOHYBVAR@ | |
+++ config.base[350]: DOHYBVAR=@DOHYBVAR@ | |
+++ config.base[351]: export NMEM_ENS=0 | |
+++ config.base[351]: NMEM_ENS=0 | |
+++ config.base[352]: export SMOOTH_ENKF=NO | |
+++ config.base[352]: SMOOTH_ENKF=NO | |
+++ config.base[353]: export l4densvar=.true. | |
+++ config.base[353]: l4densvar=.true. | |
+++ config.base[354]: export lwrite4danl=.true. | |
+++ config.base[354]: lwrite4danl=.true. | |
+++ config.base[355]: export DO_CALC_INCREMENT=NO | |
+++ config.base[355]: DO_CALC_INCREMENT=NO | |
+++ config.base[358]: export NMEM_ENS_GFS=30 | |
+++ config.base[358]: NMEM_ENS_GFS=30 | |
+++ config.base[359]: export NMEM_ENS_GFS_OFFSET=20 | |
+++ config.base[359]: NMEM_ENS_GFS_OFFSET=20 | |
+++ config.base[360]: export DO_CALC_INCREMENT_ENKF_GFS=NO | |
+++ config.base[360]: DO_CALC_INCREMENT_ENKF_GFS=NO | |
+++ config.base[363]: [[ @DOHYBVAR@ = \Y\E\S ]] | |
+++ config.base[377]: [[ @DOHYBVAR@ == \N\O ]] | |
+++ config.base[385]: export ENKF_SPREAD=YES | |
+++ config.base[385]: ENKF_SPREAD=YES | |
+++ config.base[388]: [[ forecast-only = \c\y\c\l\e\d ]] | |
+++ config.base[388]: [[ YES = \N\O ]] | |
+++ config.base[388]: [[ forecast-only = \f\o\r\e\c\a\s\t\-\o\n\l\y ]] | |
+++ config.base[388]: [[ .false. = \.\f\a\l\s\e\. ]] | |
+++ config.base[389]: export IAU_OFFSET=0 | |
+++ config.base[389]: IAU_OFFSET=0 | |
+++ config.base[390]: export IAU_FHROT=0 | |
+++ config.base[390]: IAU_FHROT=0 | |
+++ config.base[391]: export IAUFHRS=6 | |
+++ config.base[391]: IAUFHRS=6 | |
+++ config.base[394]: [[ YES = \N\O ]] | |
+++ config.base[398]: [[ YES == \Y\E\S ]] | |
+++ config.base[399]: export restart_interval_enkfgdas=3 | |
+++ config.base[399]: restart_interval_enkfgdas=3 | |
+++ config.base[404]: export restart_interval_enkfgfs=3 | |
+++ config.base[404]: restart_interval_enkfgfs=3 | |
+++ config.base[406]: [[ YES == \Y\E\S ]] | |
+++ config.base[407]: export restart_interval_gdas=3 | |
+++ config.base[407]: restart_interval_gdas=3 | |
+++ config.base[412]: export GSI_SOILANAL=NO | |
+++ config.base[412]: GSI_SOILANAL=NO | |
+++ config.base[415]: export DONST=YES | |
+++ config.base[415]: DONST=YES | |
+++ config.base[416]: [[ YES = \Y\E\S ]] | |
+++ config.base[416]: export 'FNTSFA= ' | |
+++ config.base[416]: FNTSFA=' ' | |
+++ config.base[419]: export nst_anl=.true. | |
+++ config.base[419]: nst_anl=.true. | |
+++ config.base[422]: export MAKE_NSSTBUFR=NO | |
+++ config.base[422]: MAKE_NSSTBUFR=NO | |
+++ config.base[425]: export MAKE_ACFTBUFR=NO | |
+++ config.base[425]: MAKE_ACFTBUFR=NO | |
+++ config.base[428]: export 'INCREMENTS_TO_ZERO='\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
+++ config.base[428]: INCREMENTS_TO_ZERO=''\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
+++ config.base[431]: export 'INCVARS_ZERO_STRAT='\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
+++ config.base[431]: INCVARS_ZERO_STRAT=''\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
+++ config.base[432]: export INCVARS_EFOLD=5 | |
+++ config.base[432]: INCVARS_EFOLD=5 | |
+++ config.base[437]: export netcdf_diag=.true. | |
+++ config.base[437]: netcdf_diag=.true. | |
+++ config.base[438]: export binary_diag=.false. | |
+++ config.base[438]: binary_diag=.false. | |
+++ config.base[441]: export DO_METP=NO | |
+++ config.base[441]: DO_METP=NO | |
+++ config.base[442]: export DO_FIT2OBS=YES | |
+++ config.base[442]: DO_FIT2OBS=YES | |
+++ config.base[443]: export DO_VRFY_OCEANDA=NO | |
+++ config.base[443]: DO_VRFY_OCEANDA=NO | |
+++ config.base[446]: export HPSSARCH=NO | |
+++ config.base[446]: HPSSARCH=NO | |
+++ config.base[447]: export LOCALARCH=NO | |
+++ config.base[447]: LOCALARCH=NO | |
+++ config.base[448]: [[ NO = \Y\E\S ]] | |
+++ config.base[452]: export ARCH_CYC=00 | |
+++ config.base[452]: ARCH_CYC=00 | |
+++ config.base[453]: export ARCH_WARMICFREQ=4 | |
+++ config.base[453]: ARCH_WARMICFREQ=4 | |
+++ config.base[454]: export ARCH_FCSTICFREQ=1 | |
+++ config.base[454]: ARCH_FCSTICFREQ=1 | |
+++ config.base[457]: export FITSARC=YES | |
+++ config.base[457]: FITSARC=YES | |
+++ config.base[458]: export FHMAX_FITS=132 | |
+++ config.base[458]: FHMAX_FITS=132 | |
+++ config.base[459]: [[ 132 -gt 120 ]] | |
+++ config.base[459]: export FHMAX_FITS=120 | |
+++ config.base[459]: FHMAX_FITS=120 | |
+++ config.base[462]: [[ NO = \Y\E\S ]] | |
+++ config.base[469]: export NUM_SND_COLLECTIVES=9 | |
+++ config.base[469]: NUM_SND_COLLECTIVES=9 | |
+++ config.base[471]: echo 'END: config.base' | |
END: config.base | |
++ jjob_header.sh[99]: status=0 | |
++ jjob_header.sh[100]: (( status != 0 )) | |
++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
++ jjob_header.sh[98]: source /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.genesis | |
+++ config.genesis[4]: echo 'BEGIN: config.genesis' | |
BEGIN: config.genesis | |
+++ config.genesis[7]: . /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.resources genesis | |
++++ config.resources[7]: (( 1 != 1 )) | |
++++ config.resources[31]: step=genesis | |
++++ config.resources[33]: echo 'BEGIN: config.resources' | |
BEGIN: config.resources | |
++++ config.resources[35]: case ${machine} in | |
++++ config.resources[40]: npe_node_max=80 | |
++++ config.resources[72]: export npe_node_max | |
++++ config.resources[74]: case ${step} in | |
++++ config.resources[855]: export wtime_genesis=00:25:00 | |
++++ config.resources[855]: wtime_genesis=00:25:00 | |
++++ config.resources[856]: export npe_genesis=1 | |
++++ config.resources[856]: npe_genesis=1 | |
++++ config.resources[857]: export nth_genesis=1 | |
++++ config.resources[857]: nth_genesis=1 | |
++++ config.resources[858]: export npe_node_genesis=1 | |
++++ config.resources[858]: npe_node_genesis=1 | |
++++ config.resources[859]: export memory_genesis=10G | |
++++ config.resources[859]: memory_genesis=10G | |
++++ config.resources[1300]: echo 'END: config.resources' | |
END: config.resources | |
+++ config.genesis[10]: . /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.tropcy | |
++++ config.tropcy[4]: echo 'BEGIN: config.tropcy' | |
BEGIN: config.tropcy | |
++++ config.tropcy[7]: export HOMEens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg | |
++++ config.tropcy[7]: HOMEens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg | |
++++ config.tropcy[9]: export SENDCOM=YES | |
++++ config.tropcy[9]: SENDCOM=YES | |
++++ config.tropcy[11]: export FHOUT_CYCLONE=6 | |
++++ config.tropcy[11]: FHOUT_CYCLONE=6 | |
++++ config.tropcy[12]: FHMAX_CYCLONE=120 | |
++++ config.tropcy[13]: export FHMAX_CYCLONE | |
++++ config.tropcy[15]: echo 'END: config.tropcy' | |
END: config.tropcy | |
+++ config.genesis[12]: echo 'END: config.genesis' | |
END: config.genesis | |
++ jjob_header.sh[99]: status=0 | |
++ jjob_header.sh[100]: (( status != 0 )) | |
++ jjob_header.sh[110]: source /work2/noaa/stmp/CI/HERCULES/2608/gfs/env/HERCULES.env genesis | |
+++ HERCULES.env[3]: [[ 1 -ne 1 ]] | |
+++ HERCULES.env[13]: step=genesis | |
+++ HERCULES.env[15]: export 'launcher=srun -l --export=ALL' | |
+++ HERCULES.env[15]: launcher='srun -l --export=ALL' | |
+++ HERCULES.env[16]: export 'mpmd_opt=--multi-prog --output=mpmd.%j.%t.out' | |
+++ HERCULES.env[16]: mpmd_opt='--multi-prog --output=mpmd.%j.%t.out' | |
+++ HERCULES.env[19]: export MPI_BUFS_PER_PROC=2048 | |
+++ HERCULES.env[19]: MPI_BUFS_PER_PROC=2048 | |
+++ HERCULES.env[20]: export MPI_BUFS_PER_HOST=2048 | |
+++ HERCULES.env[20]: MPI_BUFS_PER_HOST=2048 | |
+++ HERCULES.env[21]: export MPI_GROUP_MAX=256 | |
+++ HERCULES.env[21]: MPI_GROUP_MAX=256 | |
+++ HERCULES.env[22]: export MPI_MEMMAP_OFF=1 | |
+++ HERCULES.env[22]: MPI_MEMMAP_OFF=1 | |
+++ HERCULES.env[23]: export MP_STDOUTMODE=ORDERED | |
+++ HERCULES.env[23]: MP_STDOUTMODE=ORDERED | |
+++ HERCULES.env[24]: export KMP_AFFINITY=scatter | |
+++ HERCULES.env[24]: KMP_AFFINITY=scatter | |
+++ HERCULES.env[25]: export OMP_STACKSIZE=2048000 | |
+++ HERCULES.env[25]: OMP_STACKSIZE=2048000 | |
+++ HERCULES.env[26]: export NTHSTACK=1024000000 | |
+++ HERCULES.env[26]: NTHSTACK=1024000000 | |
+++ HERCULES.env[28]: export I_MPI_EXTRA_FILESYSTEM=1 | |
+++ HERCULES.env[28]: I_MPI_EXTRA_FILESYSTEM=1 | |
+++ HERCULES.env[29]: export I_MPI_EXTRA_FILESYSTEM_LIST=lustre | |
+++ HERCULES.env[29]: I_MPI_EXTRA_FILESYSTEM_LIST=lustre | |
+++ HERCULES.env[31]: ulimit -s unlimited | |
+++ HERCULES.env[32]: ulimit -a | |
real-time non-blocking time (microseconds, -R) unlimited | |
core file size (blocks, -c) 0 | |
data seg size (kbytes, -d) unlimited | |
scheduling priority (-e) 0 | |
file size (blocks, -f) unlimited | |
pending signals (-i) 2042963 | |
max locked memory (kbytes, -l) unlimited | |
max memory size (kbytes, -m) 10485760 | |
open files (-n) 131072 | |
pipe size (512 bytes, -p) 8 | |
POSIX message queues (bytes, -q) 819200 | |
real-time priority (-r) 0 | |
stack size (kbytes, -s) unlimited | |
cpu time (seconds, -t) unlimited | |
max user processes (-u) 1028798 | |
virtual memory (kbytes, -v) unlimited | |
file locks (-x) unlimited | |
+++ HERCULES.env[34]: case ${step} in | |
+++ HERCULES.env[334]: echo 'WARNING: The job step genesis does not specify Hercules-specific resources' | |
WARNING: The job step genesis does not specify Hercules-specific resources | |
++ jjob_header.sh[111]: status=0 | |
++ jjob_header.sh[112]: (( status != 0 )) | |
+ JGFS_ATMOS_CYCLONE_GENESIS[9]: [[ HERCULES == \h\e\r\c\u\l\e\s ]] | |
+ JGFS_ATMOS_CYCLONE_GENESIS[14]: export cmodel=gfs | |
+ JGFS_ATMOS_CYCLONE_GENESIS[14]: cmodel=gfs | |
+ JGFS_ATMOS_CYCLONE_GENESIS[19]: export SENDDBN=NO | |
+ JGFS_ATMOS_CYCLONE_GENESIS[19]: SENDDBN=NO | |
+ JGFS_ATMOS_CYCLONE_GENESIS[20]: export SENDECF=NO | |
+ JGFS_ATMOS_CYCLONE_GENESIS[20]: SENDECF=NO | |
+ JGFS_ATMOS_CYCLONE_GENESIS[25]: export HOMEens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg | |
+ JGFS_ATMOS_CYCLONE_GENESIS[25]: HOMEens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg | |
+ JGFS_ATMOS_CYCLONE_GENESIS[26]: export EXECens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/exec | |
+ JGFS_ATMOS_CYCLONE_GENESIS[26]: EXECens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/exec | |
+ JGFS_ATMOS_CYCLONE_GENESIS[27]: export FIXens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/fix | |
+ JGFS_ATMOS_CYCLONE_GENESIS[27]: FIXens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/fix | |
+ JGFS_ATMOS_CYCLONE_GENESIS[28]: export USHens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/ush | |
+ JGFS_ATMOS_CYCLONE_GENESIS[28]: USHens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/ush | |
+ JGFS_ATMOS_CYCLONE_GENESIS[29]: export SCRIPTens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/scripts | |
+ JGFS_ATMOS_CYCLONE_GENESIS[29]: SCRIPTens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/scripts | |
+ JGFS_ATMOS_CYCLONE_GENESIS[34]: YMD=20210323 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[34]: HH=12 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[34]: declare_from_tmpl -rx COM_ATMOS_GENESIS | |
+ bash_utils.sh[35]: [[ NO == \N\O ]] | |
+ bash_utils.sh[35]: set +x | |
declare_from_tmpl :: COM_ATMOS_GENESIS=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_GENESIS[35]: YMD=20210323 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[35]: HH=12 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[35]: GRID=0p25 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[35]: declare_from_tmpl -rx COM_ATMOS_GRIB_0p25:COM_ATMOS_GRIB_GRID_TMPL | |
+ bash_utils.sh[35]: [[ NO == \N\O ]] | |
+ bash_utils.sh[35]: set +x | |
declare_from_tmpl :: COM_ATMOS_GRIB_0p25=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[39]: export COMIN=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[39]: COMIN=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[40]: export gfsdir=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[40]: gfsdir=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[41]: export COMINgfs=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[41]: COMINgfs=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[43]: export COMINgenvit=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_GENESIS[43]: COMINgenvit=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_GENESIS[44]: export COMOUTgenvit=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_GENESIS[44]: COMOUTgenvit=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_GENESIS[45]: export COMOUT=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_GENESIS[45]: COMOUT=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_GENESIS[47]: export COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat | |
+ JGFS_ATMOS_CYCLONE_GENESIS[47]: COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat | |
+ JGFS_ATMOS_CYCLONE_GENESIS[49]: mkdir -m 775 -p /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_GENESIS[51]: export JYYYY=2021 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[51]: JYYYY=2021 | |
+ JGFS_ATMOS_CYCLONE_GENESIS[57]: /work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/scripts/exgfs_tc_genesis.sh | |
/work2/noaa/stmp/CI/HERCULES/2608/gfs/jobs/JGFS_ATMOS_CYCLONE_GENESIS: line 57: /work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/scripts/exgfs_tc_genesis.sh: No such file or directory | |
+ JGFS_ATMOS_CYCLONE_GENESIS[1]: postamble JGFS_ATMOS_CYCLONE_GENESIS 1717046255 127 | |
+ preamble.sh[70]: set +x | |
End JGFS_ATMOS_CYCLONE_GENESIS at 05:18:01 with error code 127 (time elapsed: 00:00:26) | |
+ genesis.sh[1]: postamble genesis.sh 1717046253 127 | |
+ preamble.sh[70]: set +x | |
End genesis.sh at 05:18:01 with error code 127 (time elapsed: 00:00:28) |
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Begin tracker.sh at Thu May 30 05:17:34 UTC 2024 | |
+ tracker.sh[7]: source /work2/noaa/stmp/CI/HERCULES/2608/gfs/ush/load_fv3gfs_modules.sh | |
++ load_fv3gfs_modules.sh[4]: [[ NO == \N\O ]] | |
++ load_fv3gfs_modules.sh[5]: echo 'Loading modules quietly...' | |
Loading modules quietly... | |
++ load_fv3gfs_modules.sh[6]: set +x | |
Running "module reset". Resetting modules to system default. The following $MODULEPATH directories have been removed: None | |
Currently Loaded Modules: | |
1) contrib/0.1 41) grib-util/1.3.0 | |
2) intel-oneapi-compilers/2023.1.0 42) g2tmpl/1.10.2 | |
3) stack-intel/2021.9.0 43) gsi-ncdiag/1.1.2 | |
4) intel-oneapi-mpi/2021.9.0 44) crtm-fix/2.4.0.1_emc | |
5) stack-intel-oneapi-mpi/2021.9.0 45) git-lfs/3.1.2 | |
6) intel-oneapi-mkl/2023.1.0 46) crtm/2.4.0.1 | |
7) zlib/1.2.13 47) openblas/0.3.24 | |
8) pigz/2.7 48) py-setuptools/63.4.3 | |
9) zstd/1.5.2 49) py-numpy/1.23.4 | |
10) tar/1.34 50) bufr/11.7.0 | |
11) gettext/0.21.1 51) gmake/4.2.1 | |
12) libxcrypt/4.4.35 52) wgrib2/2.0.8 | |
13) sqlite/3.43.2 53) py-f90nml/1.4.3 | |
14) util-linux-uuid/2.38.1 54) py-cftime/1.0.3.4 | |
15) python/3.11.6 55) py-netcdf4/1.5.8 | |
16) libjpeg/2.1.0 56) libyaml/0.2.5 | |
17) jasper/2.0.32 57) py-pyyaml/6.0 | |
18) libpng/1.6.37 58) py-markupsafe/2.1.3 | |
19) openjpeg/2.3.1 59) py-jinja2/3.1.2 | |
20) eccodes/2.32.0 60) py-bottleneck/1.3.7 | |
21) fftw/3.3.10 61) py-numexpr/2.8.4 | |
22) nghttp2/1.57.0 62) py-et-xmlfile/1.0.1 | |
23) curl/8.4.0 63) py-openpyxl/3.1.2 | |
24) proj/9.2.1 64) py-pytz/2023.3 | |
25) udunits/2.2.28 65) py-pyxlsb/1.0.10 | |
26) cdo/2.2.0 66) py-xlrd/2.0.1 | |
27) hdf5/1.14.0 67) py-xlsxwriter/3.1.7 | |
28) snappy/1.1.10 68) py-xlwt/1.3.0 | |
29) c-blosc/1.21.5 69) py-pandas/1.5.3 | |
30) netcdf-c/4.9.2 70) py-six/1.16.0 | |
31) netcdf-fortran/4.6.1 71) py-python-dateutil/2.8.2 | |
32) antlr/2.7.7 72) g2c/1.6.4 | |
33) gsl/2.7.1 73) netcdf-cxx4/4.3.1 | |
34) nco/5.0.6 74) met/9.1.3 | |
35) bacio/2.4.1 75) metplus/3.1.1 | |
36) w3emc/2.10.0 76) py-packaging/23.1 | |
37) prod_util/2.1.1 77) py-xarray/2023.7.0 | |
38) g2/3.4.5 78) prepobs/1.0.1 | |
39) sp/2.5.0 79) fit2obs/1.1.1 | |
40) ip/4.3.0 80) module_base.hercules | |
+ tracker.sh[8]: status=0 | |
+ tracker.sh[9]: (( status != 0 )) | |
+ tracker.sh[11]: export job=tracker | |
+ tracker.sh[11]: job=tracker | |
+ tracker.sh[12]: export jobid=tracker.495671 | |
+ tracker.sh[12]: jobid=tracker.495671 | |
+ tracker.sh[17]: /work2/noaa/stmp/CI/HERCULES/2608/gfs/jobs/JGFS_ATMOS_CYCLONE_TRACKER | |
Begin JGFS_ATMOS_CYCLONE_TRACKER at Thu May 30 05:17:36 UTC 2024 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[4]: source /work2/noaa/stmp/CI/HERCULES/2608/gfs/ush/jjob_header.sh -e tracker -c 'base tracker' | |
++ jjob_header.sh[44]: OPTIND=1 | |
++ jjob_header.sh[45]: getopts c:e: option | |
++ jjob_header.sh[46]: case "${option}" in | |
++ jjob_header.sh[48]: env_job=tracker | |
++ jjob_header.sh[45]: getopts c:e: option | |
++ jjob_header.sh[46]: case "${option}" in | |
++ jjob_header.sh[47]: read -ra configs | |
++ jjob_header.sh[45]: getopts c:e: option | |
++ jjob_header.sh[59]: shift 4 | |
++ jjob_header.sh[61]: [[ -z tracker ]] | |
++ jjob_header.sh[69]: export DATA=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/tracker.495671 | |
++ jjob_header.sh[69]: DATA=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/tracker.495671 | |
++ jjob_header.sh[70]: [[ YES == \Y\E\S ]] | |
++ jjob_header.sh[71]: rm -rf /work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/tracker.495671 | |
++ jjob_header.sh[73]: mkdir -p /work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/tracker.495671 | |
++ jjob_header.sh[74]: cd /work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/tracker.495671 | |
++ jjob_header.sh[80]: export cycle=t12z | |
++ jjob_header.sh[80]: cycle=t12z | |
++ jjob_header.sh[81]: setpdy.sh | |
sed: can't read /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/date/t12z: No such file or directory | |
completed cleanly | |
completed cleanly | |
Source PDY script to export PDYm7, ..., PDY, ..., PDYp7 variables. | |
++ jjob_header.sh[82]: source ./PDY | |
+++ PDY[1]: export PDYm7=20210316 | |
+++ PDY[1]: PDYm7=20210316 | |
+++ PDY[2]: export PDYm6=20210317 | |
+++ PDY[2]: PDYm6=20210317 | |
+++ PDY[3]: export PDYm5=20210318 | |
+++ PDY[3]: PDYm5=20210318 | |
+++ PDY[4]: export PDYm4=20210319 | |
+++ PDY[4]: PDYm4=20210319 | |
+++ PDY[5]: export PDYm3=20210320 | |
+++ PDY[5]: PDYm3=20210320 | |
+++ PDY[6]: export PDYm2=20210321 | |
+++ PDY[6]: PDYm2=20210321 | |
+++ PDY[7]: export PDYm1=20210322 | |
+++ PDY[7]: PDYm1=20210322 | |
+++ PDY[8]: export PDY=20210323 | |
+++ PDY[8]: PDY=20210323 | |
+++ PDY[9]: export PDYp1=20210324 | |
+++ PDY[9]: PDYp1=20210324 | |
+++ PDY[10]: export PDYp2=20210325 | |
+++ PDY[10]: PDYp2=20210325 | |
+++ PDY[11]: export PDYp3=20210326 | |
+++ PDY[11]: PDYp3=20210326 | |
+++ PDY[12]: export PDYp4=20210327 | |
+++ PDY[12]: PDYp4=20210327 | |
+++ PDY[13]: export PDYp5=20210328 | |
+++ PDY[13]: PDYp5=20210328 | |
+++ PDY[14]: export PDYp6=20210329 | |
+++ PDY[14]: PDYp6=20210329 | |
+++ PDY[15]: export PDYp7=20210330 | |
+++ PDY[15]: PDYp7=20210330 | |
++ jjob_header.sh[88]: export pid=496261 | |
++ jjob_header.sh[88]: pid=496261 | |
++ jjob_header.sh[89]: export pgmout=OUTPUT.496261 | |
++ jjob_header.sh[89]: pgmout=OUTPUT.496261 | |
++ jjob_header.sh[90]: export pgmerr=errfile | |
++ jjob_header.sh[90]: pgmerr=errfile | |
++ jjob_header.sh[96]: export EXPDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c | |
++ jjob_header.sh[96]: EXPDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c | |
++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
++ jjob_header.sh[98]: source /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.base | |
+++ config.base[6]: echo 'BEGIN: config.base' | |
BEGIN: config.base | |
+++ config.base[9]: export machine=HERCULES | |
+++ config.base[9]: machine=HERCULES | |
+++ config.base[12]: export RUN_ENVIR=emc | |
+++ config.base[12]: RUN_ENVIR=emc | |
+++ config.base[15]: export ACCOUNT=nems | |
+++ config.base[15]: ACCOUNT=nems | |
+++ config.base[16]: export QUEUE=batch | |
+++ config.base[16]: QUEUE=batch | |
+++ config.base[17]: export QUEUE_SERVICE=batch | |
+++ config.base[17]: QUEUE_SERVICE=batch | |
+++ config.base[18]: export PARTITION_BATCH=hercules | |
+++ config.base[18]: PARTITION_BATCH=hercules | |
+++ config.base[19]: export PARTITION_SERVICE=service | |
+++ config.base[19]: PARTITION_SERVICE=service | |
+++ config.base[22]: export HPSS_PROJECT=emc-global | |
+++ config.base[22]: HPSS_PROJECT=emc-global | |
+++ config.base[25]: export HOMEgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs | |
+++ config.base[25]: HOMEgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs | |
+++ config.base[26]: export EXECgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/exec | |
+++ config.base[26]: EXECgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/exec | |
+++ config.base[27]: export FIXgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix | |
+++ config.base[27]: FIXgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix | |
+++ config.base[28]: export PARMgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/parm | |
+++ config.base[28]: PARMgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/parm | |
+++ config.base[29]: export SCRgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/scripts | |
+++ config.base[29]: SCRgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/scripts | |
+++ config.base[30]: export USHgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/ush | |
+++ config.base[30]: USHgfs=/work2/noaa/stmp/CI/HERCULES/2608/gfs/ush | |
+++ config.base[32]: export FIXam=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/am | |
+++ config.base[32]: FIXam=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/am | |
+++ config.base[33]: export FIXaer=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/aer | |
+++ config.base[33]: FIXaer=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/aer | |
+++ config.base[34]: export FIXcpl=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/cpl | |
+++ config.base[34]: FIXcpl=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/cpl | |
+++ config.base[35]: export FIXlut=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/lut | |
+++ config.base[35]: FIXlut=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/lut | |
+++ config.base[36]: export FIXorog=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/orog | |
+++ config.base[36]: FIXorog=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/orog | |
+++ config.base[37]: export FIXcice=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/cice | |
+++ config.base[37]: FIXcice=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/cice | |
+++ config.base[38]: export FIXmom=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/mom6 | |
+++ config.base[38]: FIXmom=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/mom6 | |
+++ config.base[39]: export FIXreg2grb2=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/reg2grb2 | |
+++ config.base[39]: FIXreg2grb2=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/reg2grb2 | |
+++ config.base[40]: export FIXugwd=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/ugwd | |
+++ config.base[40]: FIXugwd=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/ugwd | |
+++ config.base[41]: export FIXgdas=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/gdas | |
+++ config.base[41]: FIXgdas=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/gdas | |
+++ config.base[46]: export PACKAGEROOT=/work/noaa/global/glopara/nwpara | |
+++ config.base[46]: PACKAGEROOT=/work/noaa/global/glopara/nwpara | |
+++ config.base[47]: export COMROOT=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT | |
+++ config.base[47]: COMROOT=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT | |
+++ config.base[48]: export COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat | |
+++ config.base[48]: COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat | |
+++ config.base[49]: export DMPDIR=/work/noaa/rstprod/dump | |
+++ config.base[49]: DMPDIR=/work/noaa/rstprod/dump | |
+++ config.base[50]: export BASE_CPLIC=/work/noaa/global/glopara/data/ICSDIR/prototype_ICs | |
+++ config.base[50]: BASE_CPLIC=/work/noaa/global/glopara/data/ICSDIR/prototype_ICs | |
+++ config.base[54]: export COMINecmwf=/work/noaa/global/glopara/data/external_gempak/ecmwf | |
+++ config.base[54]: COMINecmwf=/work/noaa/global/glopara/data/external_gempak/ecmwf | |
+++ config.base[55]: export COMINnam=/work/noaa/global/glopara/data/external_gempak/nam | |
+++ config.base[55]: COMINnam=/work/noaa/global/glopara/data/external_gempak/nam | |
+++ config.base[56]: export COMINukmet=/work/noaa/global/glopara/data/external_gempak/ukmet | |
+++ config.base[56]: COMINukmet=/work/noaa/global/glopara/data/external_gempak/ukmet | |
+++ config.base[59]: export HOMEDIR=/work/noaa/global/mterry | |
+++ config.base[59]: HOMEDIR=/work/noaa/global/mterry | |
+++ config.base[60]: export STMP=/work/noaa/stmp/mterry/HERCULES | |
+++ config.base[60]: STMP=/work/noaa/stmp/mterry/HERCULES | |
+++ config.base[61]: export PTMP=/work/noaa/stmp/mterry/HERCULES | |
+++ config.base[61]: PTMP=/work/noaa/stmp/mterry/HERCULES | |
+++ config.base[62]: export NOSCRUB=/work/noaa/global/mterry | |
+++ config.base[62]: NOSCRUB=/work/noaa/global/mterry | |
+++ config.base[65]: export BASE_GIT=/work/noaa/global/glopara/git_rocky9 | |
+++ config.base[65]: BASE_GIT=/work/noaa/global/glopara/git_rocky9 | |
+++ config.base[68]: export DO_GOES=NO | |
+++ config.base[68]: DO_GOES=NO | |
+++ config.base[69]: export DO_BUFRSND=NO | |
+++ config.base[69]: DO_BUFRSND=NO | |
+++ config.base[70]: export DO_GEMPAK=NO | |
+++ config.base[70]: DO_GEMPAK=NO | |
+++ config.base[71]: export DO_AWIPS=NO | |
+++ config.base[71]: DO_AWIPS=NO | |
+++ config.base[72]: export DO_NPOESS=NO | |
+++ config.base[72]: DO_NPOESS=NO | |
+++ config.base[73]: export DO_TRACKER=YES | |
+++ config.base[73]: DO_TRACKER=YES | |
+++ config.base[74]: export DO_GENESIS=YES | |
+++ config.base[74]: DO_GENESIS=YES | |
+++ config.base[75]: export DO_GENESIS_FSU=NO | |
+++ config.base[75]: DO_GENESIS_FSU=NO | |
+++ config.base[76]: export DO_VERFOZN=YES | |
+++ config.base[76]: DO_VERFOZN=YES | |
+++ config.base[77]: export DO_VERFRAD=YES | |
+++ config.base[77]: DO_VERFRAD=YES | |
+++ config.base[78]: export DO_VMINMON=YES | |
+++ config.base[78]: DO_VMINMON=YES | |
+++ config.base[79]: export DO_MOS=NO | |
+++ config.base[79]: DO_MOS=NO | |
+++ config.base[85]: export REALTIME=YES | |
+++ config.base[85]: REALTIME=YES | |
+++ config.base[88]: export MODE=forecast-only | |
+++ config.base[88]: MODE=forecast-only | |
+++ config.base[97]: export FIXgsi=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/gsi | |
+++ config.base[97]: FIXgsi=/work2/noaa/stmp/CI/HERCULES/2608/gfs/fix/gsi | |
+++ config.base[98]: export HOMEpost=/work2/noaa/stmp/CI/HERCULES/2608/gfs | |
+++ config.base[98]: HOMEpost=/work2/noaa/stmp/CI/HERCULES/2608/gfs | |
+++ config.base[99]: export HOMEobsproc=/work/noaa/global/glopara/git_rocky9/obsproc/v1.1.2 | |
+++ config.base[99]: HOMEobsproc=/work/noaa/global/glopara/git_rocky9/obsproc/v1.1.2 | |
+++ config.base[102]: export 'NCP=/bin/cp -p' | |
+++ config.base[102]: NCP='/bin/cp -p' | |
+++ config.base[103]: export NMV=/bin/mv | |
+++ config.base[103]: NMV=/bin/mv | |
+++ config.base[104]: export 'NLN=/bin/ln -sf' | |
+++ config.base[104]: NLN='/bin/ln -sf' | |
+++ config.base[105]: export VERBOSE=YES | |
+++ config.base[105]: VERBOSE=YES | |
+++ config.base[106]: export KEEPDATA=NO | |
+++ config.base[106]: KEEPDATA=NO | |
+++ config.base[107]: export DEBUG_POSTSCRIPT=NO | |
+++ config.base[107]: DEBUG_POSTSCRIPT=NO | |
+++ config.base[108]: export CHGRP_RSTPROD=YES | |
+++ config.base[108]: CHGRP_RSTPROD=YES | |
+++ config.base[109]: export 'CHGRP_CMD=chgrp rstprod' | |
+++ config.base[109]: CHGRP_CMD='chgrp rstprod' | |
+++ config.base[110]: export NCDUMP=/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/netcdf-c-4.9.2-tslbcfy/bin/ncdump | |
+++ config.base[110]: NCDUMP=/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/netcdf-c-4.9.2-tslbcfy/bin/ncdump | |
+++ config.base[111]: export NCLEN=/work2/noaa/stmp/CI/HERCULES/2608/gfs/ush/getncdimlen | |
+++ config.base[111]: NCLEN=/work2/noaa/stmp/CI/HERCULES/2608/gfs/ush/getncdimlen | |
+++ config.base[114]: export BASE_ENV=/work2/noaa/stmp/CI/HERCULES/2608/gfs/env | |
+++ config.base[114]: BASE_ENV=/work2/noaa/stmp/CI/HERCULES/2608/gfs/env | |
+++ config.base[115]: export BASE_JOB=/work2/noaa/stmp/CI/HERCULES/2608/gfs/jobs/rocoto | |
+++ config.base[115]: BASE_JOB=/work2/noaa/stmp/CI/HERCULES/2608/gfs/jobs/rocoto | |
+++ config.base[118]: export SDATE=2021032312 | |
+++ config.base[118]: SDATE=2021032312 | |
+++ config.base[119]: export EDATE=2021032312 | |
+++ config.base[119]: EDATE=2021032312 | |
+++ config.base[120]: export EXP_WARM_START=.false. | |
+++ config.base[120]: EXP_WARM_START=.false. | |
+++ config.base[121]: export assim_freq=6 | |
+++ config.base[121]: assim_freq=6 | |
+++ config.base[122]: export PSLOT=C48_ATM_94b5af9c | |
+++ config.base[122]: PSLOT=C48_ATM_94b5af9c | |
+++ config.base[123]: export EXPDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c | |
+++ config.base[123]: EXPDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c | |
+++ config.base[124]: export ROTDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c | |
+++ config.base[124]: ROTDIR=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c | |
+++ config.base[125]: export ROTDIR_DUMP=YES | |
+++ config.base[125]: ROTDIR_DUMP=YES | |
+++ config.base[126]: export DUMP_SUFFIX= | |
+++ config.base[126]: DUMP_SUFFIX= | |
+++ config.base[127]: [[ 2021032312 -ge 2019092100 ]] | |
+++ config.base[127]: [[ 2021032312 -le 2019110700 ]] | |
+++ config.base[130]: export DATAROOT=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c | |
+++ config.base[130]: DATAROOT=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c | |
+++ config.base[131]: export RUNDIR=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c | |
+++ config.base[131]: RUNDIR=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c | |
+++ config.base[132]: export ARCDIR=/work/noaa/global/mterry/archive/C48_ATM_94b5af9c | |
+++ config.base[132]: ARCDIR=/work/noaa/global/mterry/archive/C48_ATM_94b5af9c | |
+++ config.base[133]: export ATARDIR=/work/noaa/global/mterry/archive_rotdir/C48_ATM_94b5af9c | |
+++ config.base[133]: ATARDIR=/work/noaa/global/mterry/archive_rotdir/C48_ATM_94b5af9c | |
+++ config.base[136]: export envir=prod | |
+++ config.base[136]: envir=prod | |
+++ config.base[137]: export NET=gfs | |
+++ config.base[137]: NET=gfs | |
+++ config.base[138]: export RUN=gfs | |
+++ config.base[138]: RUN=gfs | |
+++ config.base[144]: source /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.com | |
++++ config.com[4]: echo 'BEGIN: config.com' | |
BEGIN: config.com | |
++++ config.com[37]: [[ emc == \n\c\o ]] | |
++++ config.com[41]: COM_OBS_TMPL='${ROTDIR}/${RUN}.${YMD}/${HH}/obs' | |
++++ config.com[42]: COM_RTOFS_TMPL='${DMPDIR}' | |
++++ config.com[44]: declare -rx COM_OBS_TMPL COM_RTOFS_TMPL | |
++++ config.com[45]: declare -rx 'COM_OBSDMP_TMPL=${DMPDIR}/${DUMP}${DUMP_SUFFIX}.${YMD}/${HH}/atmos' | |
++++ config.com[47]: COM_BASE='${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}' | |
++++ config.com[49]: declare -rx 'COM_TOP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}' | |
++++ config.com[51]: declare -rx 'COM_CONF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/conf' | |
++++ config.com[52]: declare -rx 'COM_ATMOS_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/input' | |
++++ config.com[53]: declare -rx 'COM_ATMOS_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/restart' | |
++++ config.com[54]: declare -rx 'COM_ATMOS_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/atmos' | |
++++ config.com[55]: declare -rx 'COM_SNOW_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow' | |
++++ config.com[56]: declare -rx 'COM_ATMOS_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/history' | |
++++ config.com[57]: declare -rx 'COM_ATMOS_MASTER_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/master' | |
++++ config.com[58]: declare -rx 'COM_ATMOS_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2' | |
++++ config.com[59]: declare -rx 'COM_ATMOS_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2/${GRID}' | |
++++ config.com[60]: declare -rx 'COM_ATMOS_BUFR_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr' | |
++++ config.com[61]: declare -rx 'COM_ATMOS_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}' | |
++++ config.com[62]: declare -rx 'COM_ATMOS_GENESIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital' | |
++++ config.com[63]: declare -rx 'COM_ATMOS_TRACK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks' | |
++++ config.com[64]: declare -rx 'COM_ATMOS_GOES_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/goes_sim' | |
++++ config.com[65]: declare -rx 'COM_ATMOS_IMAGERY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/imagery' | |
++++ config.com[66]: declare -rx 'COM_ATMOS_OZNMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon' | |
++++ config.com[67]: declare -rx 'COM_ATMOS_RADMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/radmon' | |
++++ config.com[68]: declare -rx 'COM_ATMOS_MINMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/minmon' | |
++++ config.com[69]: declare -rx 'COM_ATMOS_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/wmo' | |
++++ config.com[71]: declare -rx 'COM_WAVE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/restart' | |
++++ config.com[72]: declare -rx 'COM_WAVE_PREP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/prep' | |
++++ config.com[73]: declare -rx 'COM_WAVE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/history' | |
++++ config.com[74]: declare -rx 'COM_WAVE_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gridded' | |
++++ config.com[75]: declare -rx 'COM_WAVE_STATION_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/station' | |
++++ config.com[76]: declare -rx 'COM_WAVE_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gempak' | |
++++ config.com[77]: declare -rx 'COM_WAVE_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/wmo' | |
++++ config.com[79]: declare -rx 'COM_OCEAN_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/history' | |
++++ config.com[80]: declare -rx 'COM_OCEAN_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/restart' | |
++++ config.com[81]: declare -rx 'COM_OCEAN_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/input' | |
++++ config.com[82]: declare -rx 'COM_OCEAN_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ocean' | |
++++ config.com[83]: declare -rx 'COM_OCEAN_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/netcdf' | |
++++ config.com[84]: declare -rx 'COM_OCEAN_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2' | |
++++ config.com[85]: declare -rx 'COM_OCEAN_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}' | |
++++ config.com[87]: declare -rx 'COM_ICE_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ice' | |
++++ config.com[88]: declare -rx 'COM_ICE_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/input' | |
++++ config.com[89]: declare -rx 'COM_ICE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/history' | |
++++ config.com[90]: declare -rx 'COM_ICE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/restart' | |
++++ config.com[91]: declare -rx 'COM_ICE_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/netcdf' | |
++++ config.com[92]: declare -rx 'COM_ICE_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2' | |
++++ config.com[93]: declare -rx 'COM_ICE_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}' | |
++++ config.com[95]: declare -rx 'COM_CHEM_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/chem/history' | |
++++ config.com[96]: declare -rx 'COM_CHEM_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem' | |
++++ config.com[98]: declare -rx 'COM_MED_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/med/restart' | |
+++ config.base[147]: export 'ERRSCRIPT=eval [[ $err = 0 ]]' | |
+++ config.base[147]: ERRSCRIPT='eval [[ $err = 0 ]]' | |
+++ config.base[148]: export LOGSCRIPT= | |
+++ config.base[148]: LOGSCRIPT= | |
+++ config.base[151]: export 'REDOUT=1>' | |
+++ config.base[151]: REDOUT='1>' | |
+++ config.base[152]: export 'REDERR=2>' | |
+++ config.base[152]: REDERR='2>' | |
+++ config.base[154]: export SENDECF=NO | |
+++ config.base[154]: SENDECF=NO | |
+++ config.base[155]: export SENDSDM=NO | |
+++ config.base[155]: SENDSDM=NO | |
+++ config.base[156]: export SENDDBN_NTC=NO | |
+++ config.base[156]: SENDDBN_NTC=NO | |
+++ config.base[157]: export SENDDBN=NO | |
+++ config.base[157]: SENDDBN=NO | |
+++ config.base[158]: export DBNROOT=/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/prod-util-2.1.1-ddlo2cq/fakedbn | |
+++ config.base[158]: DBNROOT=/work/noaa/epic/role-epic/spack-stack/hercules/spack-stack-1.6.0/envs/unified-env/install/intel/2021.9.0/prod-util-2.1.1-ddlo2cq/fakedbn | |
+++ config.base[161]: export APP=ATM | |
+++ config.base[161]: APP=ATM | |
+++ config.base[163]: shopt -s extglob | |
+++ config.base[165]: case "${RUN}" in | |
+++ config.base[172]: shopt -u extglob | |
+++ config.base[175]: export DO_ATM=YES | |
+++ config.base[175]: DO_ATM=YES | |
+++ config.base[176]: export DO_COUPLED=NO | |
+++ config.base[176]: DO_COUPLED=NO | |
+++ config.base[177]: export DO_WAVE=NO | |
+++ config.base[177]: DO_WAVE=NO | |
+++ config.base[178]: export DO_OCN=NO | |
+++ config.base[178]: DO_OCN=NO | |
+++ config.base[179]: export DO_ICE=NO | |
+++ config.base[179]: DO_ICE=NO | |
+++ config.base[180]: export DO_AERO=NO | |
+++ config.base[180]: DO_AERO=NO | |
+++ config.base[181]: export AERO_FCST_CDUMP= | |
+++ config.base[181]: AERO_FCST_CDUMP= | |
+++ config.base[182]: export AERO_ANL_CDUMP= | |
+++ config.base[182]: AERO_ANL_CDUMP= | |
+++ config.base[183]: export WAVE_CDUMP= | |
+++ config.base[183]: WAVE_CDUMP= | |
+++ config.base[184]: export DOBNDPNT_WAVE=NO | |
+++ config.base[184]: DOBNDPNT_WAVE=NO | |
+++ config.base[185]: export DOIBP_WAV=NO | |
+++ config.base[185]: DOIBP_WAV=NO | |
+++ config.base[186]: export FRAC_GRID=.true. | |
+++ config.base[186]: FRAC_GRID=.true. | |
+++ config.base[187]: export DO_NEST=NO | |
+++ config.base[187]: DO_NEST=NO | |
+++ config.base[188]: [[ NO == \Y\E\S ]] | |
+++ config.base[192]: export ntiles=6 | |
+++ config.base[192]: ntiles=6 | |
+++ config.base[196]: export OPS_RES=C768 | |
+++ config.base[196]: OPS_RES=C768 | |
+++ config.base[199]: export LEVS=128 | |
+++ config.base[199]: LEVS=128 | |
+++ config.base[200]: export CASE=C48 | |
+++ config.base[200]: CASE=C48 | |
+++ config.base[201]: export CASE_ENS=@CASEENS@ | |
+++ config.base[201]: CASE_ENS=@CASEENS@ | |
+++ config.base[202]: export OCNRES=500 | |
+++ config.base[202]: OCNRES=500 | |
+++ config.base[203]: export ICERES=500 | |
+++ config.base[203]: ICERES=500 | |
+++ config.base[206]: case "${CASE}" in | |
+++ config.base[208]: export waveGRD=uglo_100km | |
+++ config.base[208]: waveGRD=uglo_100km | |
+++ config.base[225]: case "${APP}" in | |
+++ config.base[266]: [[ gfs =~ gdas ]] | |
+++ config.base[269]: [[ gfs =~ gfs ]] | |
+++ config.base[270]: export FHCYC=24 | |
+++ config.base[270]: FHCYC=24 | |
+++ config.base[274]: export FHMIN=0 | |
+++ config.base[274]: FHMIN=0 | |
+++ config.base[275]: export FHMAX=9 | |
+++ config.base[275]: FHMAX=9 | |
+++ config.base[276]: export FHOUT=3 | |
+++ config.base[276]: FHOUT=3 | |
+++ config.base[277]: export FHOUT_OCNICE=3 | |
+++ config.base[277]: FHOUT_OCNICE=3 | |
+++ config.base[280]: export EUPD_CYC=gdas | |
+++ config.base[280]: EUPD_CYC=gdas | |
+++ config.base[283]: export gfs_cyc=1 | |
+++ config.base[283]: gfs_cyc=1 | |
+++ config.base[286]: export FHMIN_GFS=0 | |
+++ config.base[286]: FHMIN_GFS=0 | |
+++ config.base[287]: export FHMAX_GFS=120 | |
+++ config.base[287]: FHMAX_GFS=120 | |
+++ config.base[288]: export FHOUT_GFS=3 | |
+++ config.base[288]: FHOUT_GFS=3 | |
+++ config.base[289]: export FHMAX_HF_GFS=0 | |
+++ config.base[289]: FHMAX_HF_GFS=0 | |
+++ config.base[290]: export FHOUT_HF_GFS=1 | |
+++ config.base[290]: FHOUT_HF_GFS=1 | |
+++ config.base[291]: export FHOUT_OCNICE_GFS=6 | |
+++ config.base[291]: FHOUT_OCNICE_GFS=6 | |
+++ config.base[292]: export FHMIN_WAV=0 | |
+++ config.base[292]: FHMIN_WAV=0 | |
+++ config.base[293]: export FHOUT_WAV=3 | |
+++ config.base[293]: FHOUT_WAV=3 | |
+++ config.base[294]: export FHMAX_HF_WAV=120 | |
+++ config.base[294]: FHMAX_HF_WAV=120 | |
+++ config.base[295]: export FHOUT_HF_WAV=1 | |
+++ config.base[295]: FHOUT_HF_WAV=1 | |
+++ config.base[296]: export FHMAX_WAV=9 | |
+++ config.base[296]: FHMAX_WAV=9 | |
+++ config.base[297]: export FHMAX_WAV_GFS=120 | |
+++ config.base[297]: FHMAX_WAV_GFS=120 | |
+++ config.base[298]: (( gfs_cyc != 0 )) | |
+++ config.base[299]: export STEP_GFS=24 | |
+++ config.base[299]: STEP_GFS=24 | |
+++ config.base[304]: export ILPOST=1 | |
+++ config.base[304]: ILPOST=1 | |
+++ config.base[305]: (( FHMAX_HF_GFS < 120 )) | |
+++ config.base[306]: export ILPOST=3 | |
+++ config.base[306]: ILPOST=3 | |
+++ config.base[310]: export restart_interval_gfs=12 | |
+++ config.base[310]: restart_interval_gfs=12 | |
+++ config.base[315]: export QUILTING=.true. | |
+++ config.base[315]: QUILTING=.true. | |
+++ config.base[316]: export OUTPUT_GRID=gaussian_grid | |
+++ config.base[316]: OUTPUT_GRID=gaussian_grid | |
+++ config.base[317]: export WRITE_DOPOST=.true. | |
+++ config.base[317]: WRITE_DOPOST=.true. | |
+++ config.base[318]: export WRITE_NSFLIP=.true. | |
+++ config.base[318]: WRITE_NSFLIP=.true. | |
+++ config.base[321]: export DOIAU=YES | |
+++ config.base[321]: DOIAU=YES | |
+++ config.base[322]: export IAUFHRS=3,6,9 | |
+++ config.base[322]: IAUFHRS=3,6,9 | |
+++ config.base[323]: export IAU_FHROT=3 | |
+++ config.base[323]: IAU_FHROT=3 | |
+++ config.base[324]: export IAU_DELTHRS=6 | |
+++ config.base[324]: IAU_DELTHRS=6 | |
+++ config.base[325]: export IAU_OFFSET=6 | |
+++ config.base[325]: IAU_OFFSET=6 | |
+++ config.base[326]: export DOIAU_ENKF=YES | |
+++ config.base[326]: DOIAU_ENKF=YES | |
+++ config.base[327]: export IAUFHRS_ENKF=3,6,9 | |
+++ config.base[327]: IAUFHRS_ENKF=3,6,9 | |
+++ config.base[328]: export IAU_DELTHRS_ENKF=6 | |
+++ config.base[328]: IAU_DELTHRS_ENKF=6 | |
+++ config.base[331]: export lobsdiag_forenkf=.true. | |
+++ config.base[331]: lobsdiag_forenkf=.true. | |
+++ config.base[339]: export imp_physics=8 | |
+++ config.base[339]: imp_physics=8 | |
+++ config.base[343]: export DO_JEDIATMVAR=NO | |
+++ config.base[343]: DO_JEDIATMVAR=NO | |
+++ config.base[344]: export DO_JEDIATMENS=NO | |
+++ config.base[344]: DO_JEDIATMENS=NO | |
+++ config.base[345]: export DO_JEDIOCNVAR=NO | |
+++ config.base[345]: DO_JEDIOCNVAR=NO | |
+++ config.base[346]: export DO_JEDISNOWDA=NO | |
+++ config.base[346]: DO_JEDISNOWDA=NO | |
+++ config.base[347]: export DO_MERGENSST=NO | |
+++ config.base[347]: DO_MERGENSST=NO | |
+++ config.base[350]: export DOHYBVAR=@DOHYBVAR@ | |
+++ config.base[350]: DOHYBVAR=@DOHYBVAR@ | |
+++ config.base[351]: export NMEM_ENS=0 | |
+++ config.base[351]: NMEM_ENS=0 | |
+++ config.base[352]: export SMOOTH_ENKF=NO | |
+++ config.base[352]: SMOOTH_ENKF=NO | |
+++ config.base[353]: export l4densvar=.true. | |
+++ config.base[353]: l4densvar=.true. | |
+++ config.base[354]: export lwrite4danl=.true. | |
+++ config.base[354]: lwrite4danl=.true. | |
+++ config.base[355]: export DO_CALC_INCREMENT=NO | |
+++ config.base[355]: DO_CALC_INCREMENT=NO | |
+++ config.base[358]: export NMEM_ENS_GFS=30 | |
+++ config.base[358]: NMEM_ENS_GFS=30 | |
+++ config.base[359]: export NMEM_ENS_GFS_OFFSET=20 | |
+++ config.base[359]: NMEM_ENS_GFS_OFFSET=20 | |
+++ config.base[360]: export DO_CALC_INCREMENT_ENKF_GFS=NO | |
+++ config.base[360]: DO_CALC_INCREMENT_ENKF_GFS=NO | |
+++ config.base[363]: [[ @DOHYBVAR@ = \Y\E\S ]] | |
+++ config.base[377]: [[ @DOHYBVAR@ == \N\O ]] | |
+++ config.base[385]: export ENKF_SPREAD=YES | |
+++ config.base[385]: ENKF_SPREAD=YES | |
+++ config.base[388]: [[ forecast-only = \c\y\c\l\e\d ]] | |
+++ config.base[388]: [[ YES = \N\O ]] | |
+++ config.base[388]: [[ forecast-only = \f\o\r\e\c\a\s\t\-\o\n\l\y ]] | |
+++ config.base[388]: [[ .false. = \.\f\a\l\s\e\. ]] | |
+++ config.base[389]: export IAU_OFFSET=0 | |
+++ config.base[389]: IAU_OFFSET=0 | |
+++ config.base[390]: export IAU_FHROT=0 | |
+++ config.base[390]: IAU_FHROT=0 | |
+++ config.base[391]: export IAUFHRS=6 | |
+++ config.base[391]: IAUFHRS=6 | |
+++ config.base[394]: [[ YES = \N\O ]] | |
+++ config.base[398]: [[ YES == \Y\E\S ]] | |
+++ config.base[399]: export restart_interval_enkfgdas=3 | |
+++ config.base[399]: restart_interval_enkfgdas=3 | |
+++ config.base[404]: export restart_interval_enkfgfs=3 | |
+++ config.base[404]: restart_interval_enkfgfs=3 | |
+++ config.base[406]: [[ YES == \Y\E\S ]] | |
+++ config.base[407]: export restart_interval_gdas=3 | |
+++ config.base[407]: restart_interval_gdas=3 | |
+++ config.base[412]: export GSI_SOILANAL=NO | |
+++ config.base[412]: GSI_SOILANAL=NO | |
+++ config.base[415]: export DONST=YES | |
+++ config.base[415]: DONST=YES | |
+++ config.base[416]: [[ YES = \Y\E\S ]] | |
+++ config.base[416]: export 'FNTSFA= ' | |
+++ config.base[416]: FNTSFA=' ' | |
+++ config.base[419]: export nst_anl=.true. | |
+++ config.base[419]: nst_anl=.true. | |
+++ config.base[422]: export MAKE_NSSTBUFR=NO | |
+++ config.base[422]: MAKE_NSSTBUFR=NO | |
+++ config.base[425]: export MAKE_ACFTBUFR=NO | |
+++ config.base[425]: MAKE_ACFTBUFR=NO | |
+++ config.base[428]: export 'INCREMENTS_TO_ZERO='\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
+++ config.base[428]: INCREMENTS_TO_ZERO=''\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
+++ config.base[431]: export 'INCVARS_ZERO_STRAT='\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
+++ config.base[431]: INCVARS_ZERO_STRAT=''\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
+++ config.base[432]: export INCVARS_EFOLD=5 | |
+++ config.base[432]: INCVARS_EFOLD=5 | |
+++ config.base[437]: export netcdf_diag=.true. | |
+++ config.base[437]: netcdf_diag=.true. | |
+++ config.base[438]: export binary_diag=.false. | |
+++ config.base[438]: binary_diag=.false. | |
+++ config.base[441]: export DO_METP=NO | |
+++ config.base[441]: DO_METP=NO | |
+++ config.base[442]: export DO_FIT2OBS=YES | |
+++ config.base[442]: DO_FIT2OBS=YES | |
+++ config.base[443]: export DO_VRFY_OCEANDA=NO | |
+++ config.base[443]: DO_VRFY_OCEANDA=NO | |
+++ config.base[446]: export HPSSARCH=NO | |
+++ config.base[446]: HPSSARCH=NO | |
+++ config.base[447]: export LOCALARCH=NO | |
+++ config.base[447]: LOCALARCH=NO | |
+++ config.base[448]: [[ NO = \Y\E\S ]] | |
+++ config.base[452]: export ARCH_CYC=00 | |
+++ config.base[452]: ARCH_CYC=00 | |
+++ config.base[453]: export ARCH_WARMICFREQ=4 | |
+++ config.base[453]: ARCH_WARMICFREQ=4 | |
+++ config.base[454]: export ARCH_FCSTICFREQ=1 | |
+++ config.base[454]: ARCH_FCSTICFREQ=1 | |
+++ config.base[457]: export FITSARC=YES | |
+++ config.base[457]: FITSARC=YES | |
+++ config.base[458]: export FHMAX_FITS=132 | |
+++ config.base[458]: FHMAX_FITS=132 | |
+++ config.base[459]: [[ 132 -gt 120 ]] | |
+++ config.base[459]: export FHMAX_FITS=120 | |
+++ config.base[459]: FHMAX_FITS=120 | |
+++ config.base[462]: [[ NO = \Y\E\S ]] | |
+++ config.base[469]: export NUM_SND_COLLECTIVES=9 | |
+++ config.base[469]: NUM_SND_COLLECTIVES=9 | |
+++ config.base[471]: echo 'END: config.base' | |
END: config.base | |
++ jjob_header.sh[99]: status=0 | |
++ jjob_header.sh[100]: (( status != 0 )) | |
++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
++ jjob_header.sh[98]: source /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.tracker | |
+++ config.tracker[4]: echo 'BEGIN: config.tracker' | |
BEGIN: config.tracker | |
+++ config.tracker[7]: . /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.resources tracker | |
++++ config.resources[7]: (( 1 != 1 )) | |
++++ config.resources[31]: step=tracker | |
++++ config.resources[33]: echo 'BEGIN: config.resources' | |
BEGIN: config.resources | |
++++ config.resources[35]: case ${machine} in | |
++++ config.resources[40]: npe_node_max=80 | |
++++ config.resources[72]: export npe_node_max | |
++++ config.resources[74]: case ${step} in | |
++++ config.resources[847]: export wtime_tracker=00:10:00 | |
++++ config.resources[847]: wtime_tracker=00:10:00 | |
++++ config.resources[848]: export npe_tracker=1 | |
++++ config.resources[848]: npe_tracker=1 | |
++++ config.resources[849]: export nth_tracker=1 | |
++++ config.resources[849]: nth_tracker=1 | |
++++ config.resources[850]: export npe_node_tracker=1 | |
++++ config.resources[850]: npe_node_tracker=1 | |
++++ config.resources[851]: export memory_tracker=4G | |
++++ config.resources[851]: memory_tracker=4G | |
++++ config.resources[1300]: echo 'END: config.resources' | |
END: config.resources | |
+++ config.tracker[10]: . /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/EXPDIR/C48_ATM_94b5af9c/config.tropcy | |
++++ config.tropcy[4]: echo 'BEGIN: config.tropcy' | |
BEGIN: config.tropcy | |
++++ config.tropcy[7]: export HOMEens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg | |
++++ config.tropcy[7]: HOMEens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg | |
++++ config.tropcy[9]: export SENDCOM=YES | |
++++ config.tropcy[9]: SENDCOM=YES | |
++++ config.tropcy[11]: export FHOUT_CYCLONE=6 | |
++++ config.tropcy[11]: FHOUT_CYCLONE=6 | |
++++ config.tropcy[12]: FHMAX_CYCLONE=120 | |
++++ config.tropcy[13]: export FHMAX_CYCLONE | |
++++ config.tropcy[15]: echo 'END: config.tropcy' | |
END: config.tropcy | |
+++ config.tracker[12]: echo 'END: config.tracker' | |
END: config.tracker | |
++ jjob_header.sh[99]: status=0 | |
++ jjob_header.sh[100]: (( status != 0 )) | |
++ jjob_header.sh[110]: source /work2/noaa/stmp/CI/HERCULES/2608/gfs/env/HERCULES.env tracker | |
+++ HERCULES.env[3]: [[ 1 -ne 1 ]] | |
+++ HERCULES.env[13]: step=tracker | |
+++ HERCULES.env[15]: export 'launcher=srun -l --export=ALL' | |
+++ HERCULES.env[15]: launcher='srun -l --export=ALL' | |
+++ HERCULES.env[16]: export 'mpmd_opt=--multi-prog --output=mpmd.%j.%t.out' | |
+++ HERCULES.env[16]: mpmd_opt='--multi-prog --output=mpmd.%j.%t.out' | |
+++ HERCULES.env[19]: export MPI_BUFS_PER_PROC=2048 | |
+++ HERCULES.env[19]: MPI_BUFS_PER_PROC=2048 | |
+++ HERCULES.env[20]: export MPI_BUFS_PER_HOST=2048 | |
+++ HERCULES.env[20]: MPI_BUFS_PER_HOST=2048 | |
+++ HERCULES.env[21]: export MPI_GROUP_MAX=256 | |
+++ HERCULES.env[21]: MPI_GROUP_MAX=256 | |
+++ HERCULES.env[22]: export MPI_MEMMAP_OFF=1 | |
+++ HERCULES.env[22]: MPI_MEMMAP_OFF=1 | |
+++ HERCULES.env[23]: export MP_STDOUTMODE=ORDERED | |
+++ HERCULES.env[23]: MP_STDOUTMODE=ORDERED | |
+++ HERCULES.env[24]: export KMP_AFFINITY=scatter | |
+++ HERCULES.env[24]: KMP_AFFINITY=scatter | |
+++ HERCULES.env[25]: export OMP_STACKSIZE=2048000 | |
+++ HERCULES.env[25]: OMP_STACKSIZE=2048000 | |
+++ HERCULES.env[26]: export NTHSTACK=1024000000 | |
+++ HERCULES.env[26]: NTHSTACK=1024000000 | |
+++ HERCULES.env[28]: export I_MPI_EXTRA_FILESYSTEM=1 | |
+++ HERCULES.env[28]: I_MPI_EXTRA_FILESYSTEM=1 | |
+++ HERCULES.env[29]: export I_MPI_EXTRA_FILESYSTEM_LIST=lustre | |
+++ HERCULES.env[29]: I_MPI_EXTRA_FILESYSTEM_LIST=lustre | |
+++ HERCULES.env[31]: ulimit -s unlimited | |
+++ HERCULES.env[32]: ulimit -a | |
real-time non-blocking time (microseconds, -R) unlimited | |
core file size (blocks, -c) 0 | |
data seg size (kbytes, -d) unlimited | |
scheduling priority (-e) 0 | |
file size (blocks, -f) unlimited | |
pending signals (-i) 2042963 | |
max locked memory (kbytes, -l) unlimited | |
max memory size (kbytes, -m) 4194304 | |
open files (-n) 131072 | |
pipe size (512 bytes, -p) 8 | |
POSIX message queues (bytes, -q) 819200 | |
real-time priority (-r) 0 | |
stack size (kbytes, -s) unlimited | |
cpu time (seconds, -t) unlimited | |
max user processes (-u) 1028798 | |
virtual memory (kbytes, -v) unlimited | |
file locks (-x) unlimited | |
+++ HERCULES.env[34]: case ${step} in | |
+++ HERCULES.env[334]: echo 'WARNING: The job step tracker does not specify Hercules-specific resources' | |
WARNING: The job step tracker does not specify Hercules-specific resources | |
++ jjob_header.sh[111]: status=0 | |
++ jjob_header.sh[112]: (( status != 0 )) | |
+ JGFS_ATMOS_CYCLONE_TRACKER[9]: [[ HERCULES == \h\e\r\c\u\l\e\s ]] | |
+ JGFS_ATMOS_CYCLONE_TRACKER[11]: export COMPONENT=atmos | |
+ JGFS_ATMOS_CYCLONE_TRACKER[11]: COMPONENT=atmos | |
+ JGFS_ATMOS_CYCLONE_TRACKER[17]: export CDATE=2021032312 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[17]: CDATE=2021032312 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[18]: export CDUMP=gfs | |
+ JGFS_ATMOS_CYCLONE_TRACKER[18]: CDUMP=gfs | |
+ JGFS_ATMOS_CYCLONE_TRACKER[24]: export SENDDBN=NO | |
+ JGFS_ATMOS_CYCLONE_TRACKER[24]: SENDDBN=NO | |
+ JGFS_ATMOS_CYCLONE_TRACKER[25]: export SENDECF=NO | |
+ JGFS_ATMOS_CYCLONE_TRACKER[25]: SENDECF=NO | |
+ JGFS_ATMOS_CYCLONE_TRACKER[30]: export HOMEens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg | |
+ JGFS_ATMOS_CYCLONE_TRACKER[30]: HOMEens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg | |
+ JGFS_ATMOS_CYCLONE_TRACKER[31]: export EXECens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/exec | |
+ JGFS_ATMOS_CYCLONE_TRACKER[31]: EXECens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/exec | |
+ JGFS_ATMOS_CYCLONE_TRACKER[32]: export FIXens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/fix | |
+ JGFS_ATMOS_CYCLONE_TRACKER[32]: FIXens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/fix | |
+ JGFS_ATMOS_CYCLONE_TRACKER[33]: export USHens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/ush | |
+ JGFS_ATMOS_CYCLONE_TRACKER[33]: USHens_tracker=/work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/ush | |
+ JGFS_ATMOS_CYCLONE_TRACKER[39]: YMD=20210323 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[39]: HH=12 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[39]: declare_from_tmpl -rx COM_ATMOS_TRACK COM_ATMOS_GENESIS | |
+ bash_utils.sh[35]: [[ NO == \N\O ]] | |
+ bash_utils.sh[35]: set +x | |
declare_from_tmpl :: COM_ATMOS_TRACK=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/tracks | |
declare_from_tmpl :: COM_ATMOS_GENESIS=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_TRACKER[40]: YMD=20210323 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[40]: HH=12 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[40]: GRID=0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[40]: declare_from_tmpl -rx COM_ATMOS_GRIB_0p25:COM_ATMOS_GRIB_GRID_TMPL | |
+ bash_utils.sh[35]: [[ NO == \N\O ]] | |
+ bash_utils.sh[35]: set +x | |
declare_from_tmpl :: COM_ATMOS_GRIB_0p25=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[42]: [[ ! -d /work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/tracks ]] | |
+ JGFS_ATMOS_CYCLONE_TRACKER[46]: export COMINgfs=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[46]: COMINgfs=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[47]: export gfsdir=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[47]: gfsdir=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[48]: export COMINgdas=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[48]: COMINgdas=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[49]: export gdasdir=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[49]: gdasdir=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/grib2/0p25 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[50]: export COMOUT=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/tracks | |
+ JGFS_ATMOS_CYCLONE_TRACKER[50]: COMOUT=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/tracks | |
+ JGFS_ATMOS_CYCLONE_TRACKER[51]: export COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat | |
+ JGFS_ATMOS_CYCLONE_TRACKER[51]: COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat | |
+ JGFS_ATMOS_CYCLONE_TRACKER[53]: export COMINgenvit=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_TRACKER[53]: COMINgenvit=/work2/noaa/stmp/CI/HERCULES/2608/RUNTESTS/COMROOT/C48_ATM_94b5af9c/gfs.20210323/12//products/atmos/cyclone/genesis_vital | |
+ JGFS_ATMOS_CYCLONE_TRACKER[55]: '[' emc = nco ']' | |
+ JGFS_ATMOS_CYCLONE_TRACKER[62]: export COMOUThur=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/tracker.495671 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[62]: COMOUThur=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/tracker.495671 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[63]: export COMOUTatcf=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/tracker.495671 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[63]: COMOUTatcf=/work/noaa/stmp/mterry/HERCULES/RUNDIRS/C48_ATM_94b5af9c/tracker.495671 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[72]: export pert=p01 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[72]: pert=p01 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[73]: export cmodel=gfs | |
+ JGFS_ATMOS_CYCLONE_TRACKER[73]: cmodel=gfs | |
+ JGFS_ATMOS_CYCLONE_TRACKER[74]: export loopnum=1 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[74]: loopnum=1 | |
+ JGFS_ATMOS_CYCLONE_TRACKER[77]: /work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/ush/data_check_gfs.sh | |
/work2/noaa/stmp/CI/HERCULES/2608/gfs/jobs/JGFS_ATMOS_CYCLONE_TRACKER: line 77: /work/noaa/global/glopara/git_rocky9/TC_tracker/feature-GFSv17_com_reorg/ush/data_check_gfs.sh: No such file or directory | |
+ JGFS_ATMOS_CYCLONE_TRACKER[1]: postamble JGFS_ATMOS_CYCLONE_TRACKER 1717046256 127 | |
+ preamble.sh[70]: set +x | |
End JGFS_ATMOS_CYCLONE_TRACKER at 05:18:03 with error code 127 (time elapsed: 00:00:27) | |
+ tracker.sh[1]: postamble tracker.sh 1717046254 127 | |
+ preamble.sh[70]: set +x | |
End tracker.sh at 05:18:03 with error code 127 (time elapsed: 00:00:29) |
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