Created
June 27, 2024 00:18
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error log file from CI run PR_2724
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| Begin aeroanlrun.sh at Thu Jun 27 00:11:24 UTC 2024 | |
| + aeroanlrun.sh[7]: . /scratch1/NCEPDEV/global/CI/2724/gfs/ush/load_ufsda_modules.sh | |
| ++ load_ufsda_modules.sh[4]: [[ NO == \N\O ]] | |
| ++ load_ufsda_modules.sh[5]: echo 'Loading modules quietly...' | |
| Loading modules quietly... | |
| ++ load_ufsda_modules.sh[6]: set +x | |
| Running "module reset". Resetting modules to system default. The following $MODULEPATH directories have been removed: None | |
| Currently Loaded Modules: | |
| 1) contrib 48) sp/2.5.0 | |
| 2) intel/2022.1.2 49) gsl-lite/0.37.0 | |
| 3) stack-intel/2021.5.0 50) libjpeg/2.1.0 | |
| 4) impi/2022.1.2 51) krb5/1.20.1 | |
| 5) stack-intel-oneapi-mpi/2021.5.1 52) libtirpc/1.3.3 | |
| 6) cmake/3.23.1 53) hdf/4.2.15 | |
| 7) gettext/0.19.8.1 54) jedi-cmake/1.4.0 | |
| 8) pcre2/10.42 55) libpng/1.6.37 | |
| 9) nghttp2/1.57.0 56) libxt/1.1.5 | |
| 10) curl/8.4.0 57) libxmu/1.1.4 | |
| 11) zlib/1.2.13 58) libxpm/4.11.0 | |
| 12) git/2.18.0 59) libxaw/1.0.13 | |
| 13) pkg-config/0.27.1 60) udunits/2.2.28 | |
| 14) hdf5/1.14.0 61) ncview/2.1.9 | |
| 15) parallel-netcdf/1.12.2 62) netcdf-cxx4/4.3.1 | |
| 16) snappy/1.1.10 63) json/3.10.5 | |
| 17) zstd/1.5.2 64) rocoto/1.3.6 | |
| 18) c-blosc/1.21.5 65) bacio/2.4.1 | |
| 19) netcdf-c/4.9.2 66) w3emc/2.10.0 | |
| 20) nccmp/1.9.0.1 67) prod_util/2.1.1 | |
| 21) netcdf-fortran/4.6.1 68) py-markupsafe/2.1.3 | |
| 22) antlr/2.7.7 69) py-jinja2/3.0.3 | |
| 23) gsl/2.7.1 70) py-cftime/1.0.3.4 | |
| 24) nco/5.0.6 71) py-netcdf4/1.5.8 | |
| 25) parallelio/2.5.10 72) py-pybind11/2.11.0 | |
| 26) wget/1.14 73) py-pycodestyle/2.11.0 | |
| 27) libxcrypt/4.4.35 74) libyaml/0.2.5 | |
| 28) sqlite/3.43.2 75) py-pyyaml/6.0 | |
| 29) util-linux-uuid/2.38.1 76) py-scipy/1.11.3 | |
| 30) python/3.10.13 77) py-packaging/23.1 | |
| 31) boost/1.83.0 78) py-bottleneck/1.3.7 | |
| 32) py-setuptools/63.4.3 79) py-numexpr/2.8.4 | |
| 33) py-numpy/1.22.3 80) py-et-xmlfile/1.0.1 | |
| 34) bufr/12.0.1 81) py-openpyxl/3.1.2 | |
| 35) git-lfs/2.10.0 82) py-six/1.16.0 | |
| 36) ecbuild/3.7.2 83) py-python-dateutil/2.8.2 | |
| 37) openjpeg/2.3.1 84) py-pytz/2023.3 | |
| 38) eccodes/2.32.0 85) py-pyxlsb/1.0.10 | |
| 39) eigen/3.4.0 86) py-xlrd/2.0.1 | |
| 40) openblas/0.3.24 87) py-xlsxwriter/3.1.7 | |
| 41) eckit/1.24.5 88) py-xlwt/1.3.0 | |
| 42) fftw/3.3.10 89) py-pandas/1.5.3 | |
| 43) fckit/0.11.0 90) py-xarray/2023.7.0 | |
| 44) fiat/1.2.0 91) py-f90nml/1.4.3 | |
| 45) ectrans/1.2.0 92) py-pip/23.1.2 | |
| 46) qhull/2020.2 93) GDAS/hera.intel | |
| 47) atlas/0.35.1 | |
| Package Version | |
| --------------- -------- | |
| Bottleneck 1.3.7 | |
| cftime 1.0.3.4 | |
| et-xmlfile 1.0.1 | |
| f90nml 1.4.3 | |
| Jinja2 3.0.3 | |
| MarkupSafe 2.1.3 | |
| netCDF4 1.5.8 | |
| numexpr 2.8.4 | |
| numpy 1.22.3 | |
| openpyxl 3.1.2 | |
| packaging 23.1 | |
| pandas 1.5.3 | |
| pip 23.1.2 | |
| pybind11 2.11.0 | |
| pycodestyle 2.11.0 | |
| python-dateutil 2.8.2 | |
| pytz 2023.3 | |
| pyxlsb 1.0.10 | |
| PyYAML 6.0 | |
| scipy 1.11.3 | |
| setuptools 63.4.3 | |
| six 1.16.0 | |
| xarray 2023.7.0 | |
| xlrd 2.0.1 | |
| XlsxWriter 3.1.7 | |
| xlwt 1.3.0 | |
| + aeroanlrun.sh[8]: status=0 | |
| + aeroanlrun.sh[9]: [[ 0 -ne 0 ]] | |
| + aeroanlrun.sh[11]: export job=aeroanlrun | |
| + aeroanlrun.sh[11]: job=aeroanlrun | |
| + aeroanlrun.sh[12]: export jobid=aeroanlrun.933912 | |
| + aeroanlrun.sh[12]: jobid=aeroanlrun.933912 | |
| + aeroanlrun.sh[16]: wxflowPATH=/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python:/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python/wxflow/src | |
| + aeroanlrun.sh[17]: PYTHONPATH=/scratch1/NCEPDEV/da/python/gdasapp/wxflow/20240307/src:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pip-23.1.2-z73urru/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-f90nml-1.4.3-dz2bima/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-xarray-2023.7.0-tbnsqaw/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pandas-1.5.3-7hathmq/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-xlwt-1.3.0-f7bd3ip/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-xlsxwriter-3.1.7-pmb7bam/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-xlrd-2.0.1-56miqff/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pyxlsb-1.0.10-jlrsqbq/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pytz-2023.3-5nykyqa/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-python-dateutil-2.8.2-lfyvko2/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-six-1.16.0-6knf6az/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-openpyxl-3.1.2-rv2hu6u/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-et-xmlfile-1.0.1-7goajc5/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-numexpr-2.8.4-ega4hge/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-bottleneck-1.3.7-snzpnsr/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-packaging-23.1-ke4uivr/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-scipy-1.11.3-36msxks/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pyyaml-6.0-nlgnppd/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pycodestyle-2.11.0-opcwzxa/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pybind11-2.11.0-l6cenvi/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-netcdf4-1.5.8-qs672u4/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-cftime-1.0.3.4-rnt66hg/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-jinja2-3.0.3-2g4rjkz/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-markupsafe-2.1.3-q2gnvtr/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/bufr-12.0.1-nz7jhfd/lib64/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/bufr-12.0.1-nz7jhfd/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-numpy-1.22.3-snzl53m/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-setuptools-63.4.3-wvdr656/lib/python3.10/site-packages:/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python:/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python/wxflow/src | |
| + aeroanlrun.sh[18]: export PYTHONPATH | |
| + aeroanlrun.sh[22]: /scratch1/NCEPDEV/global/CI/2724/gfs/jobs/JGLOBAL_AERO_ANALYSIS_RUN | |
| Begin JGLOBAL_AERO_ANALYSIS_RUN at Thu Jun 27 00:11:54 UTC 2024 | |
| + JGLOBAL_AERO_ANALYSIS_RUN[4]: export WIPE_DATA=NO | |
| + JGLOBAL_AERO_ANALYSIS_RUN[4]: WIPE_DATA=NO | |
| + JGLOBAL_AERO_ANALYSIS_RUN[5]: export DATA=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00 | |
| + JGLOBAL_AERO_ANALYSIS_RUN[5]: DATA=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00 | |
| + JGLOBAL_AERO_ANALYSIS_RUN[6]: source /scratch1/NCEPDEV/global/CI/2724/gfs/ush/jjob_header.sh -e aeroanlrun -c 'base aeroanl aeroanlrun' | |
| ++ jjob_header.sh[44]: OPTIND=1 | |
| ++ jjob_header.sh[45]: getopts c:e: option | |
| ++ jjob_header.sh[46]: case "${option}" in | |
| ++ jjob_header.sh[48]: env_job=aeroanlrun | |
| ++ jjob_header.sh[45]: getopts c:e: option | |
| ++ jjob_header.sh[46]: case "${option}" in | |
| ++ jjob_header.sh[47]: read -ra configs | |
| ++ jjob_header.sh[45]: getopts c:e: option | |
| ++ jjob_header.sh[59]: shift 4 | |
| ++ jjob_header.sh[61]: [[ -z aeroanlrun ]] | |
| ++ jjob_header.sh[69]: export DATA=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00 | |
| ++ jjob_header.sh[69]: DATA=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00 | |
| ++ jjob_header.sh[70]: [[ NO == \Y\E\S ]] | |
| ++ jjob_header.sh[73]: mkdir -p /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00 | |
| ++ jjob_header.sh[74]: cd /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00 | |
| ++ jjob_header.sh[80]: export cycle=t00z | |
| ++ jjob_header.sh[80]: cycle=t00z | |
| ++ jjob_header.sh[81]: setpdy.sh | |
| sed: can't read /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT/date/t00z: No such file or directory | |
| completed cleanly | |
| completed cleanly | |
| Source PDY script to export PDYm7, ..., PDY, ..., PDYp7 variables. | |
| ++ jjob_header.sh[82]: source ./PDY | |
| +++ PDY[1]: export PDYm7=20211214 | |
| +++ PDY[1]: PDYm7=20211214 | |
| +++ PDY[2]: export PDYm6=20211215 | |
| +++ PDY[2]: PDYm6=20211215 | |
| +++ PDY[3]: export PDYm5=20211216 | |
| +++ PDY[3]: PDYm5=20211216 | |
| +++ PDY[4]: export PDYm4=20211217 | |
| +++ PDY[4]: PDYm4=20211217 | |
| +++ PDY[5]: export PDYm3=20211218 | |
| +++ PDY[5]: PDYm3=20211218 | |
| +++ PDY[6]: export PDYm2=20211219 | |
| +++ PDY[6]: PDYm2=20211219 | |
| +++ PDY[7]: export PDYm1=20211220 | |
| +++ PDY[7]: PDYm1=20211220 | |
| +++ PDY[8]: export PDY=20211221 | |
| +++ PDY[8]: PDY=20211221 | |
| +++ PDY[9]: export PDYp1=20211222 | |
| +++ PDY[9]: PDYp1=20211222 | |
| +++ PDY[10]: export PDYp2=20211223 | |
| +++ PDY[10]: PDYp2=20211223 | |
| +++ PDY[11]: export PDYp3=20211224 | |
| +++ PDY[11]: PDYp3=20211224 | |
| +++ PDY[12]: export PDYp4=20211225 | |
| +++ PDY[12]: PDYp4=20211225 | |
| +++ PDY[13]: export PDYp5=20211226 | |
| +++ PDY[13]: PDYp5=20211226 | |
| +++ PDY[14]: export PDYp6=20211227 | |
| +++ PDY[14]: PDYp6=20211227 | |
| +++ PDY[15]: export PDYp7=20211228 | |
| +++ PDY[15]: PDYp7=20211228 | |
| ++ jjob_header.sh[88]: export pid=934618 | |
| ++ jjob_header.sh[88]: pid=934618 | |
| ++ jjob_header.sh[89]: export pgmout=OUTPUT.934618 | |
| ++ jjob_header.sh[89]: pgmout=OUTPUT.934618 | |
| ++ jjob_header.sh[90]: export pgmerr=errfile | |
| ++ jjob_header.sh[90]: pgmerr=errfile | |
| ++ jjob_header.sh[96]: export EXPDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd | |
| ++ jjob_header.sh[96]: EXPDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd | |
| ++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
| ++ jjob_header.sh[98]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.base | |
| +++ config.base[6]: echo 'BEGIN: config.base' | |
| BEGIN: config.base | |
| +++ config.base[9]: export machine=HERA | |
| +++ config.base[9]: machine=HERA | |
| +++ config.base[12]: export RUN_ENVIR=emc | |
| +++ config.base[12]: RUN_ENVIR=emc | |
| +++ config.base[15]: export ACCOUNT=nems | |
| +++ config.base[15]: ACCOUNT=nems | |
| +++ config.base[16]: export ACCOUNT_SERVICE=fv3-cpu | |
| +++ config.base[16]: ACCOUNT_SERVICE=fv3-cpu | |
| +++ config.base[17]: export QUEUE=batch | |
| +++ config.base[17]: QUEUE=batch | |
| +++ config.base[18]: export QUEUE_SERVICE=batch | |
| +++ config.base[18]: QUEUE_SERVICE=batch | |
| +++ config.base[19]: export PARTITION_BATCH=hera | |
| +++ config.base[19]: PARTITION_BATCH=hera | |
| +++ config.base[20]: export PARTITION_SERVICE=service | |
| +++ config.base[20]: PARTITION_SERVICE=service | |
| +++ config.base[21]: export RESERVATION= | |
| +++ config.base[21]: RESERVATION= | |
| +++ config.base[24]: export HPSS_PROJECT=emc-global | |
| +++ config.base[24]: HPSS_PROJECT=emc-global | |
| +++ config.base[27]: export HOMEgfs=/scratch1/NCEPDEV/global/CI/2724/gfs | |
| +++ config.base[27]: HOMEgfs=/scratch1/NCEPDEV/global/CI/2724/gfs | |
| +++ config.base[28]: export EXECgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/exec | |
| +++ config.base[28]: EXECgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/exec | |
| +++ config.base[29]: export FIXgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/fix | |
| +++ config.base[29]: FIXgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/fix | |
| +++ config.base[30]: export PARMgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/parm | |
| +++ config.base[30]: PARMgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/parm | |
| +++ config.base[31]: export SCRgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/scripts | |
| +++ config.base[31]: SCRgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/scripts | |
| +++ config.base[32]: export USHgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/ush | |
| +++ config.base[32]: USHgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/ush | |
| +++ config.base[34]: export FIXam=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/am | |
| +++ config.base[34]: FIXam=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/am | |
| +++ config.base[35]: export FIXaer=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/aer | |
| +++ config.base[35]: FIXaer=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/aer | |
| +++ config.base[36]: export FIXcpl=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/cpl | |
| +++ config.base[36]: FIXcpl=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/cpl | |
| +++ config.base[37]: export FIXlut=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/lut | |
| +++ config.base[37]: FIXlut=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/lut | |
| +++ config.base[38]: export FIXcice=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/cice | |
| +++ config.base[38]: FIXcice=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/cice | |
| +++ config.base[39]: export FIXmom=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/mom6 | |
| +++ config.base[39]: FIXmom=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/mom6 | |
| +++ config.base[40]: export FIXreg2grb2=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/reg2grb2 | |
| +++ config.base[40]: FIXreg2grb2=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/reg2grb2 | |
| +++ config.base[41]: export FIXgdas=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gdas | |
| +++ config.base[41]: FIXgdas=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gdas | |
| +++ config.base[46]: export PACKAGEROOT=/scratch1/NCEPDEV/global/glopara/nwpara | |
| +++ config.base[46]: PACKAGEROOT=/scratch1/NCEPDEV/global/glopara/nwpara | |
| +++ config.base[47]: export COMROOT=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT | |
| +++ config.base[47]: COMROOT=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT | |
| +++ config.base[48]: export COMINsyn=/scratch1/NCEPDEV/global/glopara/com/gfs/prod/syndat | |
| +++ config.base[48]: COMINsyn=/scratch1/NCEPDEV/global/glopara/com/gfs/prod/syndat | |
| +++ config.base[49]: export DMPDIR=/scratch1/NCEPDEV/global/glopara/dump | |
| +++ config.base[49]: DMPDIR=/scratch1/NCEPDEV/global/glopara/dump | |
| +++ config.base[50]: export BASE_CPLIC=/scratch1/NCEPDEV/global/glopara/data/ICSDIR/prototype_ICs | |
| +++ config.base[50]: BASE_CPLIC=/scratch1/NCEPDEV/global/glopara/data/ICSDIR/prototype_ICs | |
| +++ config.base[54]: export COMINecmwf=/scratch1/NCEPDEV/global/glopara/data/external_gempak/ecmwf | |
| +++ config.base[54]: COMINecmwf=/scratch1/NCEPDEV/global/glopara/data/external_gempak/ecmwf | |
| +++ config.base[55]: export COMINnam=/scratch1/NCEPDEV/global/glopara/data/external_gempak/nam | |
| +++ config.base[55]: COMINnam=/scratch1/NCEPDEV/global/glopara/data/external_gempak/nam | |
| +++ config.base[56]: export COMINukmet=/scratch1/NCEPDEV/global/glopara/data/external_gempak/ukmet | |
| +++ config.base[56]: COMINukmet=/scratch1/NCEPDEV/global/glopara/data/external_gempak/ukmet | |
| +++ config.base[59]: export HOMEDIR=/scratch1/NCEPDEV/global/Terry.McGuinness | |
| +++ config.base[59]: HOMEDIR=/scratch1/NCEPDEV/global/Terry.McGuinness | |
| +++ config.base[60]: export STMP=/scratch1/NCEPDEV/stmp2/Terry.McGuinness | |
| +++ config.base[60]: STMP=/scratch1/NCEPDEV/stmp2/Terry.McGuinness | |
| +++ config.base[61]: export PTMP=/scratch1/NCEPDEV/stmp4/Terry.McGuinness | |
| +++ config.base[61]: PTMP=/scratch1/NCEPDEV/stmp4/Terry.McGuinness | |
| +++ config.base[62]: export NOSCRUB=/scratch1/NCEPDEV/global/Terry.McGuinness | |
| +++ config.base[62]: NOSCRUB=/scratch1/NCEPDEV/global/Terry.McGuinness | |
| +++ config.base[65]: export BASE_GIT=/scratch1/NCEPDEV/global/glopara/git | |
| +++ config.base[65]: BASE_GIT=/scratch1/NCEPDEV/global/glopara/git | |
| +++ config.base[68]: export DO_GOES=NO | |
| +++ config.base[68]: DO_GOES=NO | |
| +++ config.base[69]: export DO_BUFRSND=NO | |
| +++ config.base[69]: DO_BUFRSND=NO | |
| +++ config.base[70]: export DO_GEMPAK=NO | |
| +++ config.base[70]: DO_GEMPAK=NO | |
| +++ config.base[71]: export DO_AWIPS=NO | |
| +++ config.base[71]: DO_AWIPS=NO | |
| +++ config.base[72]: export DO_NPOESS=NO | |
| +++ config.base[72]: DO_NPOESS=NO | |
| +++ config.base[73]: export DO_TRACKER=YES | |
| +++ config.base[73]: DO_TRACKER=YES | |
| +++ config.base[74]: export DO_GENESIS=YES | |
| +++ config.base[74]: DO_GENESIS=YES | |
| +++ config.base[75]: export DO_GENESIS_FSU=NO | |
| +++ config.base[75]: DO_GENESIS_FSU=NO | |
| +++ config.base[76]: export DO_VERFOZN=YES | |
| +++ config.base[76]: DO_VERFOZN=YES | |
| +++ config.base[77]: export DO_VERFRAD=YES | |
| +++ config.base[77]: DO_VERFRAD=YES | |
| +++ config.base[78]: export DO_VMINMON=YES | |
| +++ config.base[78]: DO_VMINMON=YES | |
| +++ config.base[79]: export DO_MOS=NO | |
| +++ config.base[79]: DO_MOS=NO | |
| +++ config.base[85]: export REALTIME=YES | |
| +++ config.base[85]: REALTIME=YES | |
| +++ config.base[88]: export MODE=cycled | |
| +++ config.base[88]: MODE=cycled | |
| +++ config.base[97]: export FIXgsi=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gsi | |
| +++ config.base[97]: FIXgsi=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gsi | |
| +++ config.base[98]: export HOMEpost=/scratch1/NCEPDEV/global/CI/2724/gfs | |
| +++ config.base[98]: HOMEpost=/scratch1/NCEPDEV/global/CI/2724/gfs | |
| +++ config.base[99]: export HOMEobsproc=/scratch1/NCEPDEV/global/glopara/git/obsproc/v1.1.2 | |
| +++ config.base[99]: HOMEobsproc=/scratch1/NCEPDEV/global/glopara/git/obsproc/v1.1.2 | |
| +++ config.base[102]: export 'NCP=/bin/cp -p' | |
| +++ config.base[102]: NCP='/bin/cp -p' | |
| +++ config.base[103]: export NMV=/bin/mv | |
| +++ config.base[103]: NMV=/bin/mv | |
| +++ config.base[104]: export 'NLN=/bin/ln -sf' | |
| +++ config.base[104]: NLN='/bin/ln -sf' | |
| +++ config.base[105]: export VERBOSE=YES | |
| +++ config.base[105]: VERBOSE=YES | |
| +++ config.base[106]: export KEEPDATA=NO | |
| +++ config.base[106]: KEEPDATA=NO | |
| +++ config.base[107]: export DEBUG_POSTSCRIPT=NO | |
| +++ config.base[107]: DEBUG_POSTSCRIPT=NO | |
| +++ config.base[108]: export CHGRP_RSTPROD=YES | |
| +++ config.base[108]: CHGRP_RSTPROD=YES | |
| +++ config.base[109]: export 'CHGRP_CMD=chgrp rstprod' | |
| +++ config.base[109]: CHGRP_CMD='chgrp rstprod' | |
| +++ config.base[110]: export NCDUMP=/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/netcdf-c-4.9.2-ejp7j3k/bin/ncdump/bin/ncdump | |
| +++ config.base[110]: NCDUMP=/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/netcdf-c-4.9.2-ejp7j3k/bin/ncdump/bin/ncdump | |
| +++ config.base[111]: export NCLEN=/scratch1/NCEPDEV/global/CI/2724/gfs/ush/getncdimlen | |
| +++ config.base[111]: NCLEN=/scratch1/NCEPDEV/global/CI/2724/gfs/ush/getncdimlen | |
| +++ config.base[114]: export BASE_ENV=/scratch1/NCEPDEV/global/CI/2724/gfs/env | |
| +++ config.base[114]: BASE_ENV=/scratch1/NCEPDEV/global/CI/2724/gfs/env | |
| +++ config.base[115]: export BASE_JOB=/scratch1/NCEPDEV/global/CI/2724/gfs/jobs/rocoto | |
| +++ config.base[115]: BASE_JOB=/scratch1/NCEPDEV/global/CI/2724/gfs/jobs/rocoto | |
| +++ config.base[118]: export SDATE=2021122012 | |
| +++ config.base[118]: SDATE=2021122012 | |
| +++ config.base[119]: export EDATE=2021122100 | |
| +++ config.base[119]: EDATE=2021122100 | |
| +++ config.base[120]: export EXP_WARM_START=.false. | |
| +++ config.base[120]: EXP_WARM_START=.false. | |
| +++ config.base[121]: export assim_freq=6 | |
| +++ config.base[121]: assim_freq=6 | |
| +++ config.base[122]: export PSLOT=C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[122]: PSLOT=C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[123]: export EXPDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[123]: EXPDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[124]: export ROTDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[124]: ROTDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[125]: export ROTDIR_DUMP=YES | |
| +++ config.base[125]: ROTDIR_DUMP=YES | |
| +++ config.base[126]: export DUMP_SUFFIX= | |
| +++ config.base[126]: DUMP_SUFFIX= | |
| +++ config.base[127]: [[ 2021122100 -ge 2019092100 ]] | |
| +++ config.base[127]: [[ 2021122100 -le 2019110700 ]] | |
| +++ config.base[130]: export DATAROOT=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[130]: DATAROOT=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[131]: export ARCDIR=/scratch1/NCEPDEV/global/Terry.McGuinness/archive/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[131]: ARCDIR=/scratch1/NCEPDEV/global/Terry.McGuinness/archive/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[132]: export ATARDIR=/NCEPDEV/emc-global/1year/Terry.McGuinness/HERA/scratch/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[132]: ATARDIR=/NCEPDEV/emc-global/1year/Terry.McGuinness/HERA/scratch/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[135]: export envir=prod | |
| +++ config.base[135]: envir=prod | |
| +++ config.base[136]: export NET=gfs | |
| +++ config.base[136]: NET=gfs | |
| +++ config.base[137]: export RUN=gdas | |
| +++ config.base[137]: RUN=gdas | |
| +++ config.base[143]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.com | |
| ++++ config.com[4]: echo 'BEGIN: config.com' | |
| BEGIN: config.com | |
| ++++ config.com[37]: [[ emc == \n\c\o ]] | |
| ++++ config.com[41]: COM_OBS_TMPL='${ROTDIR}/${RUN}.${YMD}/${HH}/obs' | |
| ++++ config.com[42]: COM_RTOFS_TMPL='${DMPDIR}' | |
| ++++ config.com[44]: declare -rx COM_OBS_TMPL COM_RTOFS_TMPL | |
| ++++ config.com[45]: declare -rx 'COM_OBSDMP_TMPL=${DMPDIR}/${DUMP}${DUMP_SUFFIX}.${YMD}/${HH}/atmos' | |
| ++++ config.com[47]: COM_BASE='${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}' | |
| ++++ config.com[49]: declare -rx 'COM_TOP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}' | |
| ++++ config.com[51]: declare -rx 'COM_CONF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/conf' | |
| ++++ config.com[52]: declare -rx 'COM_OBS_JEDI=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/obs_jedi' | |
| ++++ config.com[54]: declare -rx 'COM_ATMOS_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/input' | |
| ++++ config.com[55]: declare -rx 'COM_ATMOS_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/restart' | |
| ++++ config.com[56]: declare -rx 'COM_ATMOS_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/atmos' | |
| ++++ config.com[57]: declare -rx 'COM_SNOW_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow' | |
| ++++ config.com[58]: declare -rx 'COM_ATMOS_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/history' | |
| ++++ config.com[59]: declare -rx 'COM_ATMOS_MASTER_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/master' | |
| ++++ config.com[60]: declare -rx 'COM_ATMOS_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2' | |
| ++++ config.com[61]: declare -rx 'COM_ATMOS_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2/${GRID}' | |
| ++++ config.com[62]: declare -rx 'COM_ATMOS_BUFR_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr' | |
| ++++ config.com[63]: declare -rx 'COM_ATMOS_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}' | |
| ++++ config.com[64]: declare -rx 'COM_ATMOS_GENESIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital' | |
| ++++ config.com[65]: declare -rx 'COM_ATMOS_TRACK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks' | |
| ++++ config.com[66]: declare -rx 'COM_ATMOS_GOES_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/goes_sim' | |
| ++++ config.com[67]: declare -rx 'COM_ATMOS_IMAGERY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/imagery' | |
| ++++ config.com[68]: declare -rx 'COM_ATMOS_OZNMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon' | |
| ++++ config.com[69]: declare -rx 'COM_ATMOS_RADMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/radmon' | |
| ++++ config.com[70]: declare -rx 'COM_ATMOS_MINMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/minmon' | |
| ++++ config.com[71]: declare -rx 'COM_ATMOS_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/wmo' | |
| ++++ config.com[73]: declare -rx 'COM_WAVE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/restart' | |
| ++++ config.com[74]: declare -rx 'COM_WAVE_PREP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/prep' | |
| ++++ config.com[75]: declare -rx 'COM_WAVE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/history' | |
| ++++ config.com[76]: declare -rx 'COM_WAVE_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gridded' | |
| ++++ config.com[77]: declare -rx 'COM_WAVE_STATION_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/station' | |
| ++++ config.com[78]: declare -rx 'COM_WAVE_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gempak' | |
| ++++ config.com[79]: declare -rx 'COM_WAVE_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/wmo' | |
| ++++ config.com[81]: declare -rx 'COM_OCEAN_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/history' | |
| ++++ config.com[82]: declare -rx 'COM_OCEAN_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/restart' | |
| ++++ config.com[83]: declare -rx 'COM_OCEAN_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/input' | |
| ++++ config.com[84]: declare -rx 'COM_OCEAN_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ocean' | |
| ++++ config.com[85]: declare -rx 'COM_OCEAN_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/netcdf' | |
| ++++ config.com[86]: declare -rx 'COM_OCEAN_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2' | |
| ++++ config.com[87]: declare -rx 'COM_OCEAN_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}' | |
| ++++ config.com[89]: declare -rx 'COM_ICE_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ice' | |
| ++++ config.com[90]: declare -rx 'COM_ICE_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/input' | |
| ++++ config.com[91]: declare -rx 'COM_ICE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/history' | |
| ++++ config.com[92]: declare -rx 'COM_ICE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/restart' | |
| ++++ config.com[93]: declare -rx 'COM_ICE_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/netcdf' | |
| ++++ config.com[94]: declare -rx 'COM_ICE_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2' | |
| ++++ config.com[95]: declare -rx 'COM_ICE_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}' | |
| ++++ config.com[97]: declare -rx 'COM_CHEM_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/chem/history' | |
| ++++ config.com[98]: declare -rx 'COM_CHEM_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem' | |
| ++++ config.com[100]: declare -rx 'COM_MED_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/med/restart' | |
| +++ config.base[146]: export 'ERRSCRIPT=eval [[ $err = 0 ]]' | |
| +++ config.base[146]: ERRSCRIPT='eval [[ $err = 0 ]]' | |
| +++ config.base[147]: export LOGSCRIPT= | |
| +++ config.base[147]: LOGSCRIPT= | |
| +++ config.base[150]: export 'REDOUT=1>' | |
| +++ config.base[150]: REDOUT='1>' | |
| +++ config.base[151]: export 'REDERR=2>' | |
| +++ config.base[151]: REDERR='2>' | |
| +++ config.base[153]: export SENDECF=NO | |
| +++ config.base[153]: SENDECF=NO | |
| +++ config.base[154]: export SENDSDM=NO | |
| +++ config.base[154]: SENDSDM=NO | |
| +++ config.base[155]: export SENDDBN_NTC=NO | |
| +++ config.base[155]: SENDDBN_NTC=NO | |
| +++ config.base[156]: export SENDDBN=NO | |
| +++ config.base[156]: SENDDBN=NO | |
| +++ config.base[157]: export DBNROOT=/fakedbn | |
| +++ config.base[157]: DBNROOT=/fakedbn | |
| +++ config.base[160]: export APP=ATMA | |
| +++ config.base[160]: APP=ATMA | |
| +++ config.base[162]: shopt -s extglob | |
| +++ config.base[164]: case "${RUN}" in | |
| +++ config.base[171]: shopt -u extglob | |
| +++ config.base[174]: export DO_ATM=YES | |
| +++ config.base[174]: DO_ATM=YES | |
| +++ config.base[175]: export DO_COUPLED=NO | |
| +++ config.base[175]: DO_COUPLED=NO | |
| +++ config.base[176]: export DO_WAVE=NO | |
| +++ config.base[176]: DO_WAVE=NO | |
| +++ config.base[177]: export DO_OCN=NO | |
| +++ config.base[177]: DO_OCN=NO | |
| +++ config.base[178]: export DO_ICE=NO | |
| +++ config.base[178]: DO_ICE=NO | |
| +++ config.base[179]: export DO_AERO=NO | |
| +++ config.base[179]: DO_AERO=NO | |
| +++ config.base[180]: export DO_PREP_OBS_AERO=NO | |
| +++ config.base[180]: DO_PREP_OBS_AERO=NO | |
| +++ config.base[181]: export AERO_FCST_CDUMP= | |
| +++ config.base[181]: AERO_FCST_CDUMP= | |
| +++ config.base[182]: export AERO_ANL_CDUMP= | |
| +++ config.base[182]: AERO_ANL_CDUMP= | |
| +++ config.base[183]: export WAVE_CDUMP= | |
| +++ config.base[183]: WAVE_CDUMP= | |
| +++ config.base[184]: export DOBNDPNT_WAVE=NO | |
| +++ config.base[184]: DOBNDPNT_WAVE=NO | |
| +++ config.base[185]: export DOIBP_WAV=NO | |
| +++ config.base[185]: DOIBP_WAV=NO | |
| +++ config.base[186]: export FRAC_GRID=.true. | |
| +++ config.base[186]: FRAC_GRID=.true. | |
| +++ config.base[187]: export DO_NEST=NO | |
| +++ config.base[187]: DO_NEST=NO | |
| +++ config.base[188]: [[ NO == \Y\E\S ]] | |
| +++ config.base[194]: export ntiles=6 | |
| +++ config.base[194]: ntiles=6 | |
| +++ config.base[195]: export FIXugwd=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/ugwd | |
| +++ config.base[195]: FIXugwd=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/ugwd | |
| +++ config.base[196]: export FIXorog=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/orog | |
| +++ config.base[196]: FIXorog=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/orog | |
| +++ config.base[200]: export OPS_RES=C768 | |
| +++ config.base[200]: OPS_RES=C768 | |
| +++ config.base[203]: export LEVS=128 | |
| +++ config.base[203]: LEVS=128 | |
| +++ config.base[204]: export CASE=C96 | |
| +++ config.base[204]: CASE=C96 | |
| +++ config.base[205]: export CASE_ENS=@CASEENS@ | |
| +++ config.base[205]: CASE_ENS=@CASEENS@ | |
| +++ config.base[206]: export OCNRES=500 | |
| +++ config.base[206]: OCNRES=500 | |
| +++ config.base[207]: export ICERES=500 | |
| +++ config.base[207]: ICERES=500 | |
| +++ config.base[210]: case "${CASE}" in | |
| +++ config.base[215]: export waveGRD=uglo_100km | |
| +++ config.base[215]: waveGRD=uglo_100km | |
| +++ config.base[229]: case "${APP}" in | |
| +++ config.base[233]: export DO_AERO=YES | |
| +++ config.base[233]: DO_AERO=YES | |
| +++ config.base[234]: export AERO_ANL_CDUMP=both | |
| +++ config.base[234]: AERO_ANL_CDUMP=both | |
| +++ config.base[235]: export AERO_FCST_CDUMP=gdas | |
| +++ config.base[235]: AERO_FCST_CDUMP=gdas | |
| +++ config.base[270]: [[ gdas =~ gdas ]] | |
| +++ config.base[271]: export FHCYC=1 | |
| +++ config.base[271]: FHCYC=1 | |
| +++ config.base[272]: export FTSFS=10 | |
| +++ config.base[272]: FTSFS=10 | |
| +++ config.base[278]: export FHMIN=0 | |
| +++ config.base[278]: FHMIN=0 | |
| +++ config.base[279]: export FHMAX=9 | |
| +++ config.base[279]: FHMAX=9 | |
| +++ config.base[280]: export FHOUT=3 | |
| +++ config.base[280]: FHOUT=3 | |
| +++ config.base[281]: export FHOUT_OCN=3 | |
| +++ config.base[281]: FHOUT_OCN=3 | |
| +++ config.base[282]: export FHOUT_ICE=3 | |
| +++ config.base[282]: FHOUT_ICE=3 | |
| +++ config.base[285]: export EUPD_CYC=gdas | |
| +++ config.base[285]: EUPD_CYC=gdas | |
| +++ config.base[288]: export gfs_cyc=1 | |
| +++ config.base[288]: gfs_cyc=1 | |
| +++ config.base[291]: export FHMIN_GFS=0 | |
| +++ config.base[291]: FHMIN_GFS=0 | |
| +++ config.base[292]: export FHMAX_GFS=120 | |
| +++ config.base[292]: FHMAX_GFS=120 | |
| +++ config.base[293]: export FHOUT_GFS=3 | |
| +++ config.base[293]: FHOUT_GFS=3 | |
| +++ config.base[294]: export FHMAX_HF_GFS=0 | |
| +++ config.base[294]: FHMAX_HF_GFS=0 | |
| +++ config.base[295]: export FHOUT_HF_GFS=1 | |
| +++ config.base[295]: FHOUT_HF_GFS=1 | |
| +++ config.base[296]: export FHOUT_OCN_GFS=6 | |
| +++ config.base[296]: FHOUT_OCN_GFS=6 | |
| +++ config.base[297]: export FHOUT_ICE_GFS=6 | |
| +++ config.base[297]: FHOUT_ICE_GFS=6 | |
| +++ config.base[298]: export FHMIN_WAV=0 | |
| +++ config.base[298]: FHMIN_WAV=0 | |
| +++ config.base[299]: export FHOUT_WAV=3 | |
| +++ config.base[299]: FHOUT_WAV=3 | |
| +++ config.base[300]: export FHMAX_HF_WAV=120 | |
| +++ config.base[300]: FHMAX_HF_WAV=120 | |
| +++ config.base[301]: export FHOUT_HF_WAV=1 | |
| +++ config.base[301]: FHOUT_HF_WAV=1 | |
| +++ config.base[302]: export FHMAX_WAV=9 | |
| +++ config.base[302]: FHMAX_WAV=9 | |
| +++ config.base[303]: export FHMAX_WAV_GFS=120 | |
| +++ config.base[303]: FHMAX_WAV_GFS=120 | |
| +++ config.base[304]: (( gfs_cyc != 0 )) | |
| +++ config.base[305]: export STEP_GFS=24 | |
| +++ config.base[305]: STEP_GFS=24 | |
| +++ config.base[310]: export ILPOST=1 | |
| +++ config.base[310]: ILPOST=1 | |
| +++ config.base[311]: (( FHMAX_HF_GFS < 120 )) | |
| +++ config.base[312]: export ILPOST=3 | |
| +++ config.base[312]: ILPOST=3 | |
| +++ config.base[316]: export restart_interval_gfs=12 | |
| +++ config.base[316]: restart_interval_gfs=12 | |
| +++ config.base[321]: export QUILTING=.true. | |
| +++ config.base[321]: QUILTING=.true. | |
| +++ config.base[322]: export OUTPUT_GRID=gaussian_grid | |
| +++ config.base[322]: OUTPUT_GRID=gaussian_grid | |
| +++ config.base[323]: export WRITE_DOPOST=.true. | |
| +++ config.base[323]: WRITE_DOPOST=.true. | |
| +++ config.base[324]: export WRITE_NSFLIP=.true. | |
| +++ config.base[324]: WRITE_NSFLIP=.true. | |
| +++ config.base[327]: export DOIAU=YES | |
| +++ config.base[327]: DOIAU=YES | |
| +++ config.base[328]: export IAUFHRS=3,6,9 | |
| +++ config.base[328]: IAUFHRS=3,6,9 | |
| +++ config.base[329]: export IAU_FHROT=3 | |
| +++ config.base[329]: IAU_FHROT=3 | |
| +++ config.base[330]: export IAU_DELTHRS=6 | |
| +++ config.base[330]: IAU_DELTHRS=6 | |
| +++ config.base[331]: export IAU_OFFSET=6 | |
| +++ config.base[331]: IAU_OFFSET=6 | |
| +++ config.base[332]: export DOIAU_ENKF=YES | |
| +++ config.base[332]: DOIAU_ENKF=YES | |
| +++ config.base[333]: export IAUFHRS_ENKF=3,6,9 | |
| +++ config.base[333]: IAUFHRS_ENKF=3,6,9 | |
| +++ config.base[334]: export IAU_DELTHRS_ENKF=6 | |
| +++ config.base[334]: IAU_DELTHRS_ENKF=6 | |
| +++ config.base[337]: export lobsdiag_forenkf=.true. | |
| +++ config.base[337]: lobsdiag_forenkf=.true. | |
| +++ config.base[345]: export imp_physics=8 | |
| +++ config.base[345]: imp_physics=8 | |
| +++ config.base[349]: export DO_JEDIATMVAR=NO | |
| +++ config.base[349]: DO_JEDIATMVAR=NO | |
| +++ config.base[350]: export DO_JEDIATMENS=NO | |
| +++ config.base[350]: DO_JEDIATMENS=NO | |
| +++ config.base[351]: export DO_JEDIOCNVAR=NO | |
| +++ config.base[351]: DO_JEDIOCNVAR=NO | |
| +++ config.base[352]: export DO_JEDISNOWDA=YES | |
| +++ config.base[352]: DO_JEDISNOWDA=YES | |
| +++ config.base[353]: export DO_MERGENSST=NO | |
| +++ config.base[353]: DO_MERGENSST=NO | |
| +++ config.base[356]: export DOHYBVAR=NO | |
| +++ config.base[356]: DOHYBVAR=NO | |
| +++ config.base[357]: export NMEM_ENS=0 | |
| +++ config.base[357]: NMEM_ENS=0 | |
| +++ config.base[358]: export SMOOTH_ENKF=NO | |
| +++ config.base[358]: SMOOTH_ENKF=NO | |
| +++ config.base[359]: export l4densvar=.true. | |
| +++ config.base[359]: l4densvar=.true. | |
| +++ config.base[360]: export lwrite4danl=.true. | |
| +++ config.base[360]: lwrite4danl=.true. | |
| +++ config.base[361]: export DO_CALC_INCREMENT=NO | |
| +++ config.base[361]: DO_CALC_INCREMENT=NO | |
| +++ config.base[364]: export NMEM_ENS_GFS=30 | |
| +++ config.base[364]: NMEM_ENS_GFS=30 | |
| +++ config.base[365]: export NMEM_ENS_GFS_OFFSET=20 | |
| +++ config.base[365]: NMEM_ENS_GFS_OFFSET=20 | |
| +++ config.base[366]: export DO_CALC_INCREMENT_ENKF_GFS=NO | |
| +++ config.base[366]: DO_CALC_INCREMENT_ENKF_GFS=NO | |
| +++ config.base[369]: [[ NO = \Y\E\S ]] | |
| +++ config.base[383]: [[ NO == \N\O ]] | |
| +++ config.base[383]: [[ YES == \Y\E\S ]] | |
| +++ config.base[384]: export IAUFHRS=6 | |
| +++ config.base[384]: IAUFHRS=6 | |
| +++ config.base[385]: export IAU_FHROT=3 | |
| +++ config.base[385]: IAU_FHROT=3 | |
| +++ config.base[386]: export IAU_FILTER_INCREMENTS=.true. | |
| +++ config.base[386]: IAU_FILTER_INCREMENTS=.true. | |
| +++ config.base[387]: export IAUFHRS_ENKF=6 | |
| +++ config.base[387]: IAUFHRS_ENKF=6 | |
| +++ config.base[391]: export ENKF_SPREAD=YES | |
| +++ config.base[391]: ENKF_SPREAD=YES | |
| +++ config.base[394]: [[ cycled = \c\y\c\l\e\d ]] | |
| +++ config.base[394]: [[ 2021122012 = \2\0\2\1\1\2\2\1\0\0 ]] | |
| +++ config.base[394]: [[ YES = \N\O ]] | |
| +++ config.base[394]: [[ cycled = \f\o\r\e\c\a\s\t\-\o\n\l\y ]] | |
| +++ config.base[400]: [[ YES = \N\O ]] | |
| +++ config.base[404]: [[ YES == \Y\E\S ]] | |
| +++ config.base[405]: export restart_interval_enkfgdas=3 | |
| +++ config.base[405]: restart_interval_enkfgdas=3 | |
| +++ config.base[410]: export restart_interval_enkfgfs=3 | |
| +++ config.base[410]: restart_interval_enkfgfs=3 | |
| +++ config.base[412]: [[ YES == \Y\E\S ]] | |
| +++ config.base[413]: export restart_interval_gdas=3 | |
| +++ config.base[413]: restart_interval_gdas=3 | |
| +++ config.base[418]: export GSI_SOILANAL=NO | |
| +++ config.base[418]: GSI_SOILANAL=NO | |
| +++ config.base[421]: export DONST=YES | |
| +++ config.base[421]: DONST=YES | |
| +++ config.base[422]: [[ YES = \Y\E\S ]] | |
| +++ config.base[422]: export 'FNTSFA= ' | |
| +++ config.base[422]: FNTSFA=' ' | |
| +++ config.base[425]: export nst_anl=.true. | |
| +++ config.base[425]: nst_anl=.true. | |
| +++ config.base[428]: export MAKE_NSSTBUFR=NO | |
| +++ config.base[428]: MAKE_NSSTBUFR=NO | |
| +++ config.base[431]: export MAKE_ACFTBUFR=NO | |
| +++ config.base[431]: MAKE_ACFTBUFR=NO | |
| +++ config.base[434]: export 'INCREMENTS_TO_ZERO='\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[434]: INCREMENTS_TO_ZERO=''\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[437]: export 'INCVARS_ZERO_STRAT='\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[437]: INCVARS_ZERO_STRAT=''\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[438]: export INCVARS_EFOLD=5 | |
| +++ config.base[438]: INCVARS_EFOLD=5 | |
| +++ config.base[443]: export netcdf_diag=.true. | |
| +++ config.base[443]: netcdf_diag=.true. | |
| +++ config.base[444]: export binary_diag=.false. | |
| +++ config.base[444]: binary_diag=.false. | |
| +++ config.base[447]: export DO_METP=YES | |
| +++ config.base[447]: DO_METP=YES | |
| +++ config.base[448]: export DO_FIT2OBS=YES | |
| +++ config.base[448]: DO_FIT2OBS=YES | |
| +++ config.base[449]: export DO_VRFY_OCEANDA=NO | |
| +++ config.base[449]: DO_VRFY_OCEANDA=NO | |
| +++ config.base[452]: export FHMAX_FITS=132 | |
| +++ config.base[452]: FHMAX_FITS=132 | |
| +++ config.base[453]: [[ 132 -gt 120 ]] | |
| +++ config.base[453]: export FHMAX_FITS=120 | |
| +++ config.base[453]: FHMAX_FITS=120 | |
| +++ config.base[456]: export HPSSARCH=YES | |
| +++ config.base[456]: HPSSARCH=YES | |
| +++ config.base[457]: export LOCALARCH=NO | |
| +++ config.base[457]: LOCALARCH=NO | |
| +++ config.base[458]: [[ YES = \Y\E\S ]] | |
| +++ config.base[458]: [[ NO = \Y\E\S ]] | |
| +++ config.base[462]: export ARCH_CYC=00 | |
| +++ config.base[462]: ARCH_CYC=00 | |
| +++ config.base[463]: export ARCH_WARMICFREQ=4 | |
| +++ config.base[463]: ARCH_WARMICFREQ=4 | |
| +++ config.base[464]: export ARCH_FCSTICFREQ=1 | |
| +++ config.base[464]: ARCH_FCSTICFREQ=1 | |
| +++ config.base[467]: [[ NO = \Y\E\S ]] | |
| +++ config.base[474]: export REPLAY_ICS=NO | |
| +++ config.base[474]: REPLAY_ICS=NO | |
| +++ config.base[475]: export OFFSET_START_HOUR=0 | |
| +++ config.base[475]: OFFSET_START_HOUR=0 | |
| +++ config.base[478]: export NUM_SND_COLLECTIVES=9 | |
| +++ config.base[478]: NUM_SND_COLLECTIVES=9 | |
| +++ config.base[480]: echo 'END: config.base' | |
| END: config.base | |
| ++ jjob_header.sh[99]: status=0 | |
| ++ jjob_header.sh[100]: (( status != 0 )) | |
| ++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
| ++ jjob_header.sh[98]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.aeroanl | |
| +++ config.aeroanl[6]: echo 'BEGIN: config.aeroanl' | |
| BEGIN: config.aeroanl | |
| +++ config.aeroanl[8]: export CASE_ANL=C96 | |
| +++ config.aeroanl[8]: CASE_ANL=C96 | |
| +++ config.aeroanl[9]: export OBS_LIST=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/obs/lists/gdas_aero.yaml.j2 | |
| +++ config.aeroanl[9]: OBS_LIST=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/obs/lists/gdas_aero.yaml.j2 | |
| +++ config.aeroanl[10]: export STATICB_TYPE=identity | |
| +++ config.aeroanl[10]: STATICB_TYPE=identity | |
| +++ config.aeroanl[11]: export BERROR_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/berror/staticb_identity.yaml.j2 | |
| +++ config.aeroanl[11]: BERROR_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/berror/staticb_identity.yaml.j2 | |
| +++ config.aeroanl[12]: export BERROR_DATA_DIR=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gdas/bump/aero/C96/ | |
| +++ config.aeroanl[12]: BERROR_DATA_DIR=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gdas/bump/aero/C96/ | |
| +++ config.aeroanl[13]: export BERROR_DATE=20160630.000000 | |
| +++ config.aeroanl[13]: BERROR_DATE=20160630.000000 | |
| +++ config.aeroanl[15]: export CRTM_FIX_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero_crtm_coeff.yaml.j2 | |
| +++ config.aeroanl[15]: CRTM_FIX_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero_crtm_coeff.yaml.j2 | |
| +++ config.aeroanl[16]: export JEDI_FIX_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero_jedi_fix.yaml.j2 | |
| +++ config.aeroanl[16]: JEDI_FIX_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero_jedi_fix.yaml.j2 | |
| +++ config.aeroanl[18]: export io_layout_x=1 | |
| +++ config.aeroanl[18]: io_layout_x=1 | |
| +++ config.aeroanl[19]: export io_layout_y=1 | |
| +++ config.aeroanl[19]: io_layout_y=1 | |
| +++ config.aeroanl[21]: export JEDIEXE=/scratch1/NCEPDEV/global/CI/2724/gfs/exec/gdas.x | |
| +++ config.aeroanl[21]: JEDIEXE=/scratch1/NCEPDEV/global/CI/2724/gfs/exec/gdas.x | |
| +++ config.aeroanl[23]: [[ YES == \Y\E\S ]] | |
| +++ config.aeroanl[24]: export aero_bkg_times=3,6,9 | |
| +++ config.aeroanl[24]: aero_bkg_times=3,6,9 | |
| +++ config.aeroanl[25]: export JEDIYAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/variational/3dvar_fgat_gfs_aero.yaml.j2 | |
| +++ config.aeroanl[25]: JEDIYAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/variational/3dvar_fgat_gfs_aero.yaml.j2 | |
| +++ config.aeroanl[31]: echo 'END: config.aeroanl' | |
| END: config.aeroanl | |
| ++ jjob_header.sh[99]: status=0 | |
| ++ jjob_header.sh[100]: (( status != 0 )) | |
| ++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
| ++ jjob_header.sh[98]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.aeroanlrun | |
| +++ config.aeroanlrun[6]: echo 'BEGIN: config.aeroanlrun' | |
| BEGIN: config.aeroanlrun | |
| +++ config.aeroanlrun[9]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.resources aeroanlrun | |
| ++++ config.resources[9]: (( 1 != 1 )) | |
| ++++ config.resources[33]: step=aeroanlrun | |
| ++++ config.resources[35]: echo 'BEGIN: config.resources' | |
| BEGIN: config.resources | |
| ++++ config.resources[37]: case ${machine} in | |
| ++++ config.resources[44]: npe_node_max=40 | |
| ++++ config.resources[46]: mem_node_max=96GB | |
| ++++ config.resources[125]: export npe_node_max | |
| ++++ config.resources[127]: case ${step} in | |
| ++++ config.resources[417]: case ${CASE} in | |
| ++++ config.resources[427]: layout_x=8 | |
| ++++ config.resources[428]: layout_y=8 | |
| ++++ config.resources[440]: export layout_x | |
| ++++ config.resources[441]: export layout_y | |
| ++++ config.resources[443]: export wtime_aeroanlrun=00:30:00 | |
| ++++ config.resources[443]: wtime_aeroanlrun=00:30:00 | |
| ++++ config.resources[444]: export npe_aeroanlrun_gdas=384 | |
| ++++ config.resources[444]: npe_aeroanlrun_gdas=384 | |
| ++++ config.resources[445]: export npe_aeroanlrun_gfs=384 | |
| ++++ config.resources[445]: npe_aeroanlrun_gfs=384 | |
| ++++ config.resources[446]: export nth_aeroanlrun_gdas=1 | |
| ++++ config.resources[446]: nth_aeroanlrun_gdas=1 | |
| ++++ config.resources[447]: export nth_aeroanlrun_gfs=1 | |
| ++++ config.resources[447]: nth_aeroanlrun_gfs=1 | |
| ++++ config.resources[448]: export npe_node_aeroanlrun_gdas=40 | |
| ++++ config.resources[448]: npe_node_aeroanlrun_gdas=40 | |
| ++++ config.resources[449]: export npe_node_aeroanlrun_gfs=40 | |
| ++++ config.resources[449]: npe_node_aeroanlrun_gfs=40 | |
| ++++ config.resources[450]: export is_exclusive=True | |
| ++++ config.resources[450]: is_exclusive=True | |
| ++++ config.resources[452]: var_npe_node=npe_node_aeroanlrun_gdas | |
| ++++ config.resources[453]: var_nth=nth_aeroanlrun_gdas | |
| ++++ config.resources[454]: var_npe=npe_aeroanlrun_gdas | |
| ++++ config.resources[455]: [[ -n 0 ]] | |
| ++++ config.resources[456]: declare -x npe_node_aeroanlrun=40 nth_aeroanlrun=1 npe_aeroanlrun=384 | |
| ++++ config.resources[1394]: unset var_NTASKS var_npe var_npe_node var_nth | |
| ++++ config.resources[1400]: [[ -f /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.resources.HERA ]] | |
| ++++ config.resources[1401]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.resources.HERA | |
| +++++ config.resources.HERA[5]: case ${step} in | |
| ++++ config.resources[1404]: echo 'END: config.resources' | |
| END: config.resources | |
| +++ config.aeroanlrun[11]: echo 'END: config.aeroanlrun' | |
| END: config.aeroanlrun | |
| ++ jjob_header.sh[99]: status=0 | |
| ++ jjob_header.sh[100]: (( status != 0 )) | |
| ++ jjob_header.sh[110]: source /scratch1/NCEPDEV/global/CI/2724/gfs/env/HERA.env aeroanlrun | |
| +++ HERA.env[3]: [[ 1 -ne 1 ]] | |
| +++ HERA.env[10]: step=aeroanlrun | |
| +++ HERA.env[12]: export 'launcher=srun -l --export=ALL' | |
| +++ HERA.env[12]: launcher='srun -l --export=ALL' | |
| +++ HERA.env[13]: export 'mpmd_opt=--multi-prog --output=mpmd.%j.%t.out' | |
| +++ HERA.env[13]: mpmd_opt='--multi-prog --output=mpmd.%j.%t.out' | |
| +++ HERA.env[24]: export OMP_STACKSIZE=2048000 | |
| +++ HERA.env[24]: OMP_STACKSIZE=2048000 | |
| +++ HERA.env[25]: export NTHSTACK=1024000000 | |
| +++ HERA.env[25]: NTHSTACK=1024000000 | |
| +++ HERA.env[29]: [[ -n 62502287 ]] | |
| +++ HERA.env[30]: ulimit -s unlimited | |
| +++ HERA.env[31]: ulimit -a | |
| core file size (blocks, -c) unlimited | |
| data seg size (kbytes, -d) unlimited | |
| scheduling priority (-e) 0 | |
| file size (blocks, -f) unlimited | |
| pending signals (-i) 379964 | |
| max locked memory (kbytes, -l) unlimited | |
| max memory size (kbytes, -m) 94208000 | |
| open files (-n) 131072 | |
| pipe size (512 bytes, -p) 8 | |
| POSIX message queues (bytes, -q) 819200 | |
| real-time priority (-r) 0 | |
| stack size (kbytes, -s) unlimited | |
| cpu time (seconds, -t) unlimited | |
| max user processes (-u) 379964 | |
| virtual memory (kbytes, -v) unlimited | |
| file locks (-x) unlimited | |
| +++ HERA.env[34]: [[ aeroanlrun = \p\r\e\p ]] | |
| +++ HERA.env[34]: [[ aeroanlrun = \p\r\e\p\b\u\f\r ]] | |
| +++ HERA.env[43]: [[ aeroanlrun = \p\r\e\p\s\n\o\w\o\b\s ]] | |
| +++ HERA.env[47]: [[ aeroanlrun = \p\r\e\p\_\e\m\i\s\s\i\o\n\s ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\i\n\i\t ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\r\e\p ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\o\s\t\s\b\s ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\o\s\t\b\n\d\p\n\t ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\o\s\t\b\n\d\p\n\t\b\l\l ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\o\s\t\p\n\t ]] | |
| +++ HERA.env[58]: [[ aeroanlrun = \a\t\m\a\n\l\v\a\r ]] | |
| +++ HERA.env[66]: [[ aeroanlrun = \a\t\m\e\n\s\a\n\l\l\e\t\k\f ]] | |
| +++ HERA.env[74]: [[ aeroanlrun = \a\t\m\e\n\s\a\n\l\f\v\3\i\n\c ]] | |
| +++ HERA.env[82]: [[ aeroanlrun = \a\e\r\o\a\n\l\r\u\n ]] | |
| +++ HERA.env[84]: export 'APRUNCFP=srun -l --export=ALL -n $ncmd --multi-prog --output=mpmd.%j.%t.out' | |
| +++ HERA.env[84]: APRUNCFP='srun -l --export=ALL -n $ncmd --multi-prog --output=mpmd.%j.%t.out' | |
| +++ HERA.env[86]: nth_max=1 | |
| +++ HERA.env[88]: export NTHREADS_AEROANL=1 | |
| +++ HERA.env[88]: NTHREADS_AEROANL=1 | |
| +++ HERA.env[89]: [[ 1 -gt 1 ]] | |
| +++ HERA.env[90]: export 'APRUN_AEROANL=srun -l --export=ALL -n 384 --cpus-per-task=1' | |
| +++ HERA.env[90]: APRUN_AEROANL='srun -l --export=ALL -n 384 --cpus-per-task=1' | |
| ++ jjob_header.sh[111]: status=0 | |
| ++ jjob_header.sh[112]: (( status != 0 )) | |
| + JGLOBAL_AERO_ANALYSIS_RUN[19]: EXSCRIPT=/scratch1/NCEPDEV/global/CI/2724/gfs/scripts/exglobal_aero_analysis_run.py | |
| + JGLOBAL_AERO_ANALYSIS_RUN[20]: /scratch1/NCEPDEV/global/CI/2724/gfs/scripts/exglobal_aero_analysis_run.py | |
| [38;21m2024-06-27 00:12:14,555 - INFO - aero_analysis: BEGIN: AerosolAnalysis.__init__[0m | |
| [38;5;39m2024-06-27 00:12:14,557 - DEBUG - aero_analysis: ( <pygfs.task.aero_analysis.AerosolAnalysis object at 0x1538376d7a60>, {'envir': 'prod', 'HYDRA_LAUNCHER_EXTRA_ARGS': '--external-launcher', 'FRAC_GRID': True, 'waveGRD': 'uglo_100km', '_ModuleTable051_': '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', 'py_pycodestyle_ROOT': '/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pycodestyle-2.11.0-opcwzxa', '_ModuleTable070_': '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', 'INCVARS_ZERO_STRAT': "'sphum_inc','liq_wat_inc','icmr_inc','rwmr_inc','snmr_inc','grle_inc'", '_ModuleTable037_': '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', 'COM_SNOW_ANALYSIS_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow', 'SLURM_MEM_PER_CPU': 2300, '_ModuleTable064_': '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', 'LD_LIBRARY_PATH': 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'/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-openpyxl-3.1.2-rv2hu6u', 'SCRgfs': '/scratch1/NCEPDEV/global/CI/2724/gfs/scripts', 'LMOD_FAMILY_MPI': 'impi', '_ModuleTable075_': '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', 'BASH_FUNC_module%%': '() { if [ -z "${LMOD_SH_DBG_ON+x}" ]; then\n case "$-" in \n *v*x*)\n __lmod_sh_dbg=\'vx\'\n ;;\n *v*)\n __lmod_sh_dbg=\'v\'\n ;;\n *x*)\n __lmod_sh_dbg=\'x\'\n ;;\n esac;\n fi;\n if [ -n "${__lmod_sh_dbg:-}" ]; then\n set +$__lmod_sh_dbg;\n echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod\'s output" 1>&2;\n fi;\n eval "$($LMOD_CMD shell "$@")" && eval "$(${LMOD_SETTARG_CMD:-:} -s sh)";\n __lmod_my_status=$?;\n if [ -n "${__lmod_sh_dbg:-}" ]; then\n echo "Shell debugging restarted" 1>&2;\n set -$__lmod_sh_dbg;\n fi;\n unset __lmod_sh_dbg;\n return $__lmod_my_status\n}', 'BASH_FUNC_declare_from_tmpl%%': '() { if [[ ${DEBUG_WORKFLOW:-"NO"} == "NO" ]]; then\n set +x;\n fi;\n local opts="-g";\n local OPTIND=1;\n while getopts "rx" option; do\n opts="${opts}${option}";\n done;\n shift $((OPTIND-1));\n for input in "$@";\n do\n IFS=\':\' read -ra args <<< "${input}";\n local com_var="${args[0]}";\n local template;\n local value;\n if (( ${#args[@]} > 1 )); then\n template="${args[1]}";\n else\n template="${com_var}_TMPL";\n fi;\n if [[ ! -v "${template}" ]]; then\n echo "FATAL ERROR in declare_from_tmpl: Requested template ${template} not defined!";\n exit 2;\n fi;\n value=$(echo "${!template}" | envsubst);\n declare ${opts} "${com_var}"="${value}";\n echo "declare_from_tmpl :: ${com_var}=${value}";\n done;\n set_trace\n}', 'BASH_FUNC_wait_for_file%%': '() { set +x;\n local file_name=${1:?"wait_for_file() requires a file name"};\n local sleep_interval=${2:-60};\n local max_tries=${3:-100};\n for ((iter=0; iter<max_tries; iter++ ))\n do\n if [[ -r ${file_name} ]]; then\n set_trace;\n return 0;\n fi;\n sleep "${sleep_interval}";\n done;\n set_trace;\n return 1\n}', 'BASH_FUNC_ml%%': '() { eval "$($LMOD_DIR/ml_cmd "$@")"\n}', '_': '/scratch1/NCEPDEV/global/CI/2724/gfs/scripts/exglobal_aero_analysis_run.py', 'LC_CTYPE': 'C.UTF-8'} )[0m | |
| [38;5;39m2024-06-27 00:12:14,559 - DEBUG - task : Deleting runtime_key PDY from config[0m | |
| [38;5;39m2024-06-27 00:12:14,559 - DEBUG - task : Deleting runtime_key cyc from config[0m | |
| [38;5;39m2024-06-27 00:12:14,559 - DEBUG - task : Deleting runtime_key DATA from config[0m | |
| [38;5;39m2024-06-27 00:12:14,559 - DEBUG - task : Deleting runtime_key RUN from config[0m | |
| [38;5;39m2024-06-27 00:12:14,559 - DEBUG - task : Deleting runtime_key CDUMP from config[0m | |
| [38;5;39m2024-06-27 00:12:14,560 - DEBUG - task : current cycle: 2021-12-21 00:00:00[0m | |
| [38;5;39m2024-06-27 00:12:14,560 - DEBUG - task : previous cycle: 2021-12-20 18:00:00[0m | |
| [38;21m2024-06-27 00:12:14,561 - INFO - aero_analysis: END: AerosolAnalysis.__init__[0m | |
| [38;5;39m2024-06-27 00:12:14,561 - DEBUG - aero_analysis: returning: None[0m | |
| [38;21m2024-06-27 00:12:14,561 - INFO - aero_analysis: BEGIN: pygfs.task.aero_analysis.execute[0m | |
| [38;5;39m2024-06-27 00:12:14,561 - DEBUG - aero_analysis: ( <pygfs.task.aero_analysis.AerosolAnalysis object at 0x1538376d7a60> )[0m | |
| [38;5;39m2024-06-27 00:12:14,561 - DEBUG - aero_analysis: Executing srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.t00z.aerovar.yaml[0m | |
| srun: warning: can't honor --ntasks-per-node set to 40 which doesn't match the requested tasks 384 with the number of requested nodes 10. Ignoring --ntasks-per-node. | |
| 0: OOPS Starting 2024-06-27 00:12:18 (UTC+0000) | |
| 0: Configuration input file is: /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.t00z.aerovar.yaml | |
| 0: Full configuration is:YAMLConfiguration[path=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.t00z.aerovar.yaml, root={cost function => {cost type => 3D-FGAT , time window => {begin => 2021-12-20T21:00:00Z , length => PT6H} , analysis variables => (mass_fraction_of_sulfate_in_air,mass_fraction_of_hydrophobic_black_carbon_in_air,mass_fraction_of_hydrophilic_black_carbon_in_air,mass_fraction_of_hydrophobic_organic_carbon_in_air,mass_fraction_of_hydrophilic_organic_carbon_in_air,mass_fraction_of_dust001_in_air,mass_fraction_of_dust002_in_air,mass_fraction_of_dust003_in_air,mass_fraction_of_dust004_in_air,mass_fraction_of_dust005_in_air,mass_fraction_of_sea_salt001_in_air,mass_fraction_of_sea_salt002_in_air,mass_fraction_of_sea_salt003_in_air,mass_fraction_of_sea_salt004_in_air) , geometry => {fms initialization => {namelist filename => ./fv3jedi/fmsmpp.nml , field table filename => ./fv3jedi/field_table} , akbk => ./fv3jedi/akbk.nc4 , layout => (8,8) , npx => 97 , n | |
| 0: py => 97 , npz => 127 , field metadata override => ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml} , model => {name => PSEUDO , datapath => ./bkg , filetype => fms restart , filename is datetime templated => true , tstep => PT3H , filename_core => %yyyy%mm%dd.%hh%MM%ss.fv_core.res.nc , filename_trcr => %yyyy%mm%dd.%hh%MM%ss.fv_tracer.res.nc , filename_cplr => %yyyy%mm%dd.%hh%MM%ss.coupler.res} , background => {datapath => ./bkg , filetype => fms restart , datetime => 2021-12-20T21:00:00Z , filename_core => 20211220.210000.fv_core.res.nc , filename_trcr => 20211220.210000.fv_tracer.res.nc , filename_cplr => 20211220.210000.coupler.res , state variables => (t,delp,sphum,so4,bc1,bc2,oc1,oc2,dust1,dust2,dust3,dust4,dust5,seas1,seas2,seas3,seas4)} , background error => {covariance model => FV3JEDI-ID , date => 2021-12-20T21:00:00Z} , observations => {observers => ({obs space => {name => viirs_n20_aod , obsdatain => {engine => {type => H5File , obsfile => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosn | |
| 0: owDA_0661d4cd/gdasaeroanl_00/obs/gdas.t00z.viirs_n20.2021122100.nc4}} , obsdataout => {engine => {type => H5File , obsfile => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/diags/diag_viirs_n20_2021122100.nc4}} , io pool => {max pool size => 1} , simulated variables => (aerosolOpticalDepth) , channels => 4} , get values => {interpolation method => barycentric , time interpolation => linear} , obs operator => {name => AodCRTM , Absorbers => (H2O,O3) , obs options => {Sensor_ID => v.viirs-m_j1 , EndianType => little_endian , CoefficientPath => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/crtm/ , AerosolOption => aerosols_gocart_default}} , obs error => {covariance model => diagonal} , obs filters => ({filter => PreQC , maxvalue => 1},{filter => Domain Check , where => ({variable => {name => latitude@MetaData} , minvalue => -60 , maxvalue => 60})},{filter => Bounds Check , filter variables => ({name => aerosolOpticalDepth , | |
| 0: channels => 4}) , minvalue => 0 , maxvalue => 4.9 , action => {name => reject}},{filter => Background Check , channels => 4 , threshold => 3 , action => {name => inflate error , inflation factor => 3}})},{obs space => {name => viirs_npp_aod , obsdatain => {engine => {type => H5File , obsfile => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/obs/gdas.t00z.viirs_npp.2021122100.nc4}} , obsdataout => {engine => {type => H5File , obsfile => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/diags/diag_viirs_npp_2021122100.nc4}} , io pool => {max pool size => 1} , simulated variables => (aerosolOpticalDepth) , channels => 4} , get values => {interpolation method => barycentric , time interpolation => linear} , obs operator => {name => AodCRTM , Absorbers => (H2O,O3) , obs options => {Sensor_ID => v.viirs-m_npp , EndianType => little_endian , CoefficientPath => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d | |
| 0: 4cd/gdasaeroanl_00/crtm/ , AerosolOption => aerosols_gocart_default}} , obs error => {covariance model => diagonal} , obs filters => ({filter => PreQC , maxvalue => 1},{filter => Domain Check , where => ({variable => {name => latitude@MetaData} , minvalue => -60 , maxvalue => 60})},{filter => Bounds Check , filter variables => ({name => aerosolOpticalDepth , channels => 4}) , minvalue => 0 , maxvalue => 4.9 , action => {name => reject}},{filter => Background Check , channels => 4 , threshold => 3 , action => {name => inflate error , inflation factor => 3}})})}} , variational => {minimizer => {algorithm => DRPCG} , iterations => ({ninner => 35 , gradient norm reduction => 1e-10 , test => true , geometry => {fms initialization => {namelist filename => ./fv3jedi/fmsmpp.nml , field table filename => ./fv3jedi/field_table} , akbk => ./fv3jedi/akbk.nc4 , layout => (8,8) , npx => 97 , npy => 97 , npz => 127 , field metadata override => ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml} , diagnostics => {departures => bkg | |
| 0: mob}},{ninner => 35 , gradient norm reduction => 1e-10 , test => true , geometry => {fms initialization => {namelist filename => ./fv3jedi/fmsmpp.nml , field table filename => ./fv3jedi/field_table} , akbk => ./fv3jedi/akbk.nc4 , layout => (8,8) , npx => 97 , npy => 97 , npz => 127 , field metadata override => ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml} , diagnostics => {departures => bkgmob1}})} , final => {diagnostics => {departures => anlmob} , increment => {geometry => {fms initialization => {namelist filename => ./fv3jedi/fmsmpp.nml , field table filename => ./fv3jedi/field_table} , akbk => ./fv3jedi/akbk.nc4 , layout => (8,8) , npx => 97 , npy => 97 , npz => 127 , field metadata override => ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml} , output => {state component => {datapath => ./anl , prefix => aeroinc , filetype => fms restart , filename_core => 20211221.000000.fv_core.res.nc , filename_trcr => 20211221.000000.fv_tracer.res.nc , filename_cplr => 20211221.000000.coupler.res , state variables => (t, | |
| 0: delp,sphum,so4,bc1,bc2,oc1,oc2,dust1,dust2,dust3,dust4,dust5,seas1,seas2,seas3,seas4)}}}}}] | |
| 0: OOPS_STATS ObjectCountHelper started. | |
| 0: OOPS_STATS Run start - Runtime: 1.74 sec, Memory: total: 49.33 Gb, per task: min = 124.52 Mb, max = 144.05 Mb | |
| 0: Run: Starting oops::Variational<FV3JEDI, UFO and IODA observations> | |
| 0: OOPS_STATS Variational start - Runtime: 1.74 sec, Local Memory: 142.95 Mb | |
| 0: | |
| 0: FATAL from PE 0: get_ascii_file_num_lines: File ./fv3jedi/fmsmpp.nml does not exist. | |
| 0: | |
| 0: | |
| 0: FATAL from PE 0: get_ascii_file_num_lines: File ./fv3jedi/fmsmpp.nml does not exist. | |
| 0: | |
| 0: Image PC Routine Line Source | |
| 0: libifcoremt.so.5 000015269A116DCB tracebackqq_ Unknown Unknown | |
| 0: libfms.so 00001526728E4A2E mpp_mod_mp_mpp_er Unknown Unknown | |
| 0: libfms.so 00001526728DC228 mpp_mod_mp_get_as Unknown Unknown | |
| 0: libfms.so 00001526728DB9D3 mpp_mod_mp_read_i Unknown Unknown | |
| 0: libfms.so 00001526728E0B8A mpp_mod_mp_mpp_in Unknown Unknown | |
| 0: libfms.so 0000152672475EE3 fms_mod_mp_fms_in Unknown Unknown | |
| 0: libfv3jedi.so 00001526995B8E5E fv3jedi_geom_mod_ Unknown Unknown | |
| 0: libfv3jedi.so 00001526995883A7 fv3jedi_geom_init Unknown Unknown | |
| 0: libfv3jedi.so 00001526995464EC _ZN7fv3jedi8Geome Unknown Unknown | |
| 0: gdas.x 00000000005CA665 Unknown Unknown Unknown | |
| 0: gdas.x 0000000000841DC5 Unknown Unknown Unknown | |
| 0: gdas.x 000000000065B89E Unknown Unknown Unknown | |
| 0: gdas.x 000000000065B769 Unknown Unknown Unknown | |
| 0: gdas.x 0000000000641A5F Unknown Unknown Unknown | |
| 0: gdas.x 000000000063F2A7 Unknown Unknown Unknown | |
| 0: liboops.so 00001526702DDB1C _ZN4oops3Run7exec Unknown Unknown | |
| 0: gdas.x 00000000004DB410 Unknown Unknown Unknown | |
| 0: gdas.x 00000000004C6D9B Unknown Unknown Unknown | |
| 0: libc-2.28.so 00001526653B5D85 __libc_start_main Unknown Unknown | |
| 0: gdas.x 00000000004C662E Unknown Unknown Unknown | |
| 0: Abort(1) on node 0 (rank 0 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0 | |
| 0: slurmstepd: error: *** STEP 62502287.0 ON h11c37 CANCELLED AT 2024-06-27T00:12:20 *** | |
| srun: Job step aborted: Waiting up to 32 seconds for job step to finish. | |
| srun: error: h11c44: tasks 117-155: Killed | |
| srun: Terminating StepId=62502287.0 | |
| srun: error: h11c48: tasks 270-307: Killed | |
| srun: error: h11c47: tasks 232-269: Killed | |
| srun: error: h11c45: tasks 156-193: Killed | |
| srun: error: h11c49: tasks 308-345: Killed | |
| srun: error: h11c46: tasks 194-231: Killed | |
| srun: error: h11c37: tasks 0-38: Killed | |
| srun: error: h11c50: tasks 346-383: Killed | |
| srun: error: h11c43: tasks 78-116: Killed | |
| srun: error: h11c38: tasks 39-77: Killed | |
| [38;21m2024-06-27 00:12:20,955 - INFO - root : BEGIN: wxflow.exceptions.__init__[0m | |
| [38;5;39m2024-06-27 00:12:20,956 - DEBUG - root : ( WorkflowException('An error occured during execution of srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.t00z.aerovar.yaml'), 'An error occured during execution of srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.t00z.aerovar.yaml' )[0m | |
| [38;5;196m2024-06-27 00:12:20,956 - ERROR - root : An error occured during execution of srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.t00z.aerovar.yaml[0m | |
| [38;5;196m2024-06-27 00:12:20,956 - ERROR - root : An error occured during execution of srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.t00z.aerovar.yaml[0m | |
| [38;21m2024-06-27 00:12:20,956 - INFO - root : END: wxflow.exceptions.__init__[0m | |
| [38;5;39m2024-06-27 00:12:20,957 - DEBUG - root : returning: None[0m | |
| Traceback (most recent call last): | |
| File "/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python/pygfs/task/aero_analysis.py", line 120, in execute | |
| exec_cmd() | |
| File "/scratch1/NCEPDEV/da/python/gdasapp/wxflow/20240307/src/wxflow/executable.py", line 230, in __call__ | |
| raise ProcessError(f"Command exited with status {proc.returncode}:", long_msg) | |
| wxflow.executable.ProcessError: Command exited with status 137: | |
| 'srun' '-l' '--export=ALL' '-n' '384' '--cpus-per-task=1' '/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.x' 'fv3jedi' 'variational' '/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gdasaeroanl_00/gdas.t00z.aerovar.yaml' | |
| During handling of the above exception, another exception occurred: | |
| Traceback (most recent call last): | |
| File "/scratch1/NCEPDEV/global/CI/2724/gfs/scripts/exglobal_aero_analysis_run.py", line 22, in <module> | |
| AeroAnl.execute() | |
| File "/scratch1/NCEPDEV/da/python/gdasapp/wxflow/20240307/src/wxflow/logger.py", line 266, in wrapper | |
| retval = func(*args, **kwargs) | |
| File "/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python/pygfs/task/aero_analysis.py", line 124, in execute | |
| raise WorkflowException(f"An error occured during execution of {exec_cmd}") | |
| wxflow.exceptions.WorkflowException | |
| + JGLOBAL_AERO_ANALYSIS_RUN[1]: postamble JGLOBAL_AERO_ANALYSIS_RUN 1719447114 1 | |
| + preamble.sh[70]: set +x | |
| End JGLOBAL_AERO_ANALYSIS_RUN at 00:12:21 with error code 1 (time elapsed: 00:00:27) | |
| + aeroanlrun.sh[1]: postamble aeroanlrun.sh 1719447084 1 | |
| + preamble.sh[70]: set +x | |
| End aeroanlrun.sh at 00:12:21 with error code 1 (time elapsed: 00:00:57) | |
| _______________________________________________________________ | |
| Start Epilog on node h11c37 for job 62502287 :: Thu Jun 27 00:12:22 UTC 2024 | |
| Job 62502287 finished for user Terry.McGuinness in partition hera with exit code 1:0 | |
| _______________________________________________________________ | |
| End Epilogue Thu Jun 27 00:12:22 UTC 2024 |
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| Begin aeroanlrun.sh at Thu Jun 27 00:11:23 UTC 2024 | |
| + aeroanlrun.sh[7]: . /scratch1/NCEPDEV/global/CI/2724/gfs/ush/load_ufsda_modules.sh | |
| ++ load_ufsda_modules.sh[4]: [[ NO == \N\O ]] | |
| ++ load_ufsda_modules.sh[5]: echo 'Loading modules quietly...' | |
| Loading modules quietly... | |
| ++ load_ufsda_modules.sh[6]: set +x | |
| Running "module reset". Resetting modules to system default. The following $MODULEPATH directories have been removed: None | |
| Currently Loaded Modules: | |
| 1) contrib 48) sp/2.5.0 | |
| 2) intel/2022.1.2 49) gsl-lite/0.37.0 | |
| 3) stack-intel/2021.5.0 50) libjpeg/2.1.0 | |
| 4) impi/2022.1.2 51) krb5/1.20.1 | |
| 5) stack-intel-oneapi-mpi/2021.5.1 52) libtirpc/1.3.3 | |
| 6) cmake/3.23.1 53) hdf/4.2.15 | |
| 7) gettext/0.19.8.1 54) jedi-cmake/1.4.0 | |
| 8) pcre2/10.42 55) libpng/1.6.37 | |
| 9) nghttp2/1.57.0 56) libxt/1.1.5 | |
| 10) curl/8.4.0 57) libxmu/1.1.4 | |
| 11) zlib/1.2.13 58) libxpm/4.11.0 | |
| 12) git/2.18.0 59) libxaw/1.0.13 | |
| 13) pkg-config/0.27.1 60) udunits/2.2.28 | |
| 14) hdf5/1.14.0 61) ncview/2.1.9 | |
| 15) parallel-netcdf/1.12.2 62) netcdf-cxx4/4.3.1 | |
| 16) snappy/1.1.10 63) json/3.10.5 | |
| 17) zstd/1.5.2 64) rocoto/1.3.6 | |
| 18) c-blosc/1.21.5 65) bacio/2.4.1 | |
| 19) netcdf-c/4.9.2 66) w3emc/2.10.0 | |
| 20) nccmp/1.9.0.1 67) prod_util/2.1.1 | |
| 21) netcdf-fortran/4.6.1 68) py-markupsafe/2.1.3 | |
| 22) antlr/2.7.7 69) py-jinja2/3.0.3 | |
| 23) gsl/2.7.1 70) py-cftime/1.0.3.4 | |
| 24) nco/5.0.6 71) py-netcdf4/1.5.8 | |
| 25) parallelio/2.5.10 72) py-pybind11/2.11.0 | |
| 26) wget/1.14 73) py-pycodestyle/2.11.0 | |
| 27) libxcrypt/4.4.35 74) libyaml/0.2.5 | |
| 28) sqlite/3.43.2 75) py-pyyaml/6.0 | |
| 29) util-linux-uuid/2.38.1 76) py-scipy/1.11.3 | |
| 30) python/3.10.13 77) py-packaging/23.1 | |
| 31) boost/1.83.0 78) py-bottleneck/1.3.7 | |
| 32) py-setuptools/63.4.3 79) py-numexpr/2.8.4 | |
| 33) py-numpy/1.22.3 80) py-et-xmlfile/1.0.1 | |
| 34) bufr/12.0.1 81) py-openpyxl/3.1.2 | |
| 35) git-lfs/2.10.0 82) py-six/1.16.0 | |
| 36) ecbuild/3.7.2 83) py-python-dateutil/2.8.2 | |
| 37) openjpeg/2.3.1 84) py-pytz/2023.3 | |
| 38) eccodes/2.32.0 85) py-pyxlsb/1.0.10 | |
| 39) eigen/3.4.0 86) py-xlrd/2.0.1 | |
| 40) openblas/0.3.24 87) py-xlsxwriter/3.1.7 | |
| 41) eckit/1.24.5 88) py-xlwt/1.3.0 | |
| 42) fftw/3.3.10 89) py-pandas/1.5.3 | |
| 43) fckit/0.11.0 90) py-xarray/2023.7.0 | |
| 44) fiat/1.2.0 91) py-f90nml/1.4.3 | |
| 45) ectrans/1.2.0 92) py-pip/23.1.2 | |
| 46) qhull/2020.2 93) GDAS/hera.intel | |
| 47) atlas/0.35.1 | |
| Package Version | |
| --------------- -------- | |
| Bottleneck 1.3.7 | |
| cftime 1.0.3.4 | |
| et-xmlfile 1.0.1 | |
| f90nml 1.4.3 | |
| Jinja2 3.0.3 | |
| MarkupSafe 2.1.3 | |
| netCDF4 1.5.8 | |
| numexpr 2.8.4 | |
| numpy 1.22.3 | |
| openpyxl 3.1.2 | |
| packaging 23.1 | |
| pandas 1.5.3 | |
| pip 23.1.2 | |
| pybind11 2.11.0 | |
| pycodestyle 2.11.0 | |
| python-dateutil 2.8.2 | |
| pytz 2023.3 | |
| pyxlsb 1.0.10 | |
| PyYAML 6.0 | |
| scipy 1.11.3 | |
| setuptools 63.4.3 | |
| six 1.16.0 | |
| xarray 2023.7.0 | |
| xlrd 2.0.1 | |
| XlsxWriter 3.1.7 | |
| xlwt 1.3.0 | |
| + aeroanlrun.sh[8]: status=0 | |
| + aeroanlrun.sh[9]: [[ 0 -ne 0 ]] | |
| + aeroanlrun.sh[11]: export job=aeroanlrun | |
| + aeroanlrun.sh[11]: job=aeroanlrun | |
| + aeroanlrun.sh[12]: export jobid=aeroanlrun.332544 | |
| + aeroanlrun.sh[12]: jobid=aeroanlrun.332544 | |
| + aeroanlrun.sh[16]: wxflowPATH=/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python:/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python/wxflow/src | |
| + aeroanlrun.sh[17]: PYTHONPATH=/scratch1/NCEPDEV/da/python/gdasapp/wxflow/20240307/src:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pip-23.1.2-z73urru/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-f90nml-1.4.3-dz2bima/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-xarray-2023.7.0-tbnsqaw/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pandas-1.5.3-7hathmq/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-xlwt-1.3.0-f7bd3ip/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-xlsxwriter-3.1.7-pmb7bam/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-xlrd-2.0.1-56miqff/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pyxlsb-1.0.10-jlrsqbq/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pytz-2023.3-5nykyqa/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-python-dateutil-2.8.2-lfyvko2/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-six-1.16.0-6knf6az/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-openpyxl-3.1.2-rv2hu6u/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-et-xmlfile-1.0.1-7goajc5/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-numexpr-2.8.4-ega4hge/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-bottleneck-1.3.7-snzpnsr/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-packaging-23.1-ke4uivr/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-scipy-1.11.3-36msxks/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pyyaml-6.0-nlgnppd/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pycodestyle-2.11.0-opcwzxa/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pybind11-2.11.0-l6cenvi/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-netcdf4-1.5.8-qs672u4/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-cftime-1.0.3.4-rnt66hg/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-jinja2-3.0.3-2g4rjkz/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-markupsafe-2.1.3-q2gnvtr/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/bufr-12.0.1-nz7jhfd/lib64/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/bufr-12.0.1-nz7jhfd/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-numpy-1.22.3-snzl53m/lib/python3.10/site-packages:/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-setuptools-63.4.3-wvdr656/lib/python3.10/site-packages:/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python:/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python/wxflow/src | |
| + aeroanlrun.sh[18]: export PYTHONPATH | |
| + aeroanlrun.sh[22]: /scratch1/NCEPDEV/global/CI/2724/gfs/jobs/JGLOBAL_AERO_ANALYSIS_RUN | |
| Begin JGLOBAL_AERO_ANALYSIS_RUN at Thu Jun 27 00:11:53 UTC 2024 | |
| + JGLOBAL_AERO_ANALYSIS_RUN[4]: export WIPE_DATA=NO | |
| + JGLOBAL_AERO_ANALYSIS_RUN[4]: WIPE_DATA=NO | |
| + JGLOBAL_AERO_ANALYSIS_RUN[5]: export DATA=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00 | |
| + JGLOBAL_AERO_ANALYSIS_RUN[5]: DATA=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00 | |
| + JGLOBAL_AERO_ANALYSIS_RUN[6]: source /scratch1/NCEPDEV/global/CI/2724/gfs/ush/jjob_header.sh -e aeroanlrun -c 'base aeroanl aeroanlrun' | |
| ++ jjob_header.sh[44]: OPTIND=1 | |
| ++ jjob_header.sh[45]: getopts c:e: option | |
| ++ jjob_header.sh[46]: case "${option}" in | |
| ++ jjob_header.sh[48]: env_job=aeroanlrun | |
| ++ jjob_header.sh[45]: getopts c:e: option | |
| ++ jjob_header.sh[46]: case "${option}" in | |
| ++ jjob_header.sh[47]: read -ra configs | |
| ++ jjob_header.sh[45]: getopts c:e: option | |
| ++ jjob_header.sh[59]: shift 4 | |
| ++ jjob_header.sh[61]: [[ -z aeroanlrun ]] | |
| ++ jjob_header.sh[69]: export DATA=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00 | |
| ++ jjob_header.sh[69]: DATA=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00 | |
| ++ jjob_header.sh[70]: [[ NO == \Y\E\S ]] | |
| ++ jjob_header.sh[73]: mkdir -p /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00 | |
| ++ jjob_header.sh[74]: cd /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00 | |
| ++ jjob_header.sh[80]: export cycle=t00z | |
| ++ jjob_header.sh[80]: cycle=t00z | |
| ++ jjob_header.sh[81]: setpdy.sh | |
| sed: can't read /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT/date/t00z: No such file or directory | |
| completed cleanly | |
| completed cleanly | |
| Source PDY script to export PDYm7, ..., PDY, ..., PDYp7 variables. | |
| ++ jjob_header.sh[82]: source ./PDY | |
| +++ PDY[1]: export PDYm7=20211214 | |
| +++ PDY[1]: PDYm7=20211214 | |
| +++ PDY[2]: export PDYm6=20211215 | |
| +++ PDY[2]: PDYm6=20211215 | |
| +++ PDY[3]: export PDYm5=20211216 | |
| +++ PDY[3]: PDYm5=20211216 | |
| +++ PDY[4]: export PDYm4=20211217 | |
| +++ PDY[4]: PDYm4=20211217 | |
| +++ PDY[5]: export PDYm3=20211218 | |
| +++ PDY[5]: PDYm3=20211218 | |
| +++ PDY[6]: export PDYm2=20211219 | |
| +++ PDY[6]: PDYm2=20211219 | |
| +++ PDY[7]: export PDYm1=20211220 | |
| +++ PDY[7]: PDYm1=20211220 | |
| +++ PDY[8]: export PDY=20211221 | |
| +++ PDY[8]: PDY=20211221 | |
| +++ PDY[9]: export PDYp1=20211222 | |
| +++ PDY[9]: PDYp1=20211222 | |
| +++ PDY[10]: export PDYp2=20211223 | |
| +++ PDY[10]: PDYp2=20211223 | |
| +++ PDY[11]: export PDYp3=20211224 | |
| +++ PDY[11]: PDYp3=20211224 | |
| +++ PDY[12]: export PDYp4=20211225 | |
| +++ PDY[12]: PDYp4=20211225 | |
| +++ PDY[13]: export PDYp5=20211226 | |
| +++ PDY[13]: PDYp5=20211226 | |
| +++ PDY[14]: export PDYp6=20211227 | |
| +++ PDY[14]: PDYp6=20211227 | |
| +++ PDY[15]: export PDYp7=20211228 | |
| +++ PDY[15]: PDYp7=20211228 | |
| ++ jjob_header.sh[88]: export pid=333337 | |
| ++ jjob_header.sh[88]: pid=333337 | |
| ++ jjob_header.sh[89]: export pgmout=OUTPUT.333337 | |
| ++ jjob_header.sh[89]: pgmout=OUTPUT.333337 | |
| ++ jjob_header.sh[90]: export pgmerr=errfile | |
| ++ jjob_header.sh[90]: pgmerr=errfile | |
| ++ jjob_header.sh[96]: export EXPDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd | |
| ++ jjob_header.sh[96]: EXPDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd | |
| ++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
| ++ jjob_header.sh[98]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.base | |
| +++ config.base[6]: echo 'BEGIN: config.base' | |
| BEGIN: config.base | |
| +++ config.base[9]: export machine=HERA | |
| +++ config.base[9]: machine=HERA | |
| +++ config.base[12]: export RUN_ENVIR=emc | |
| +++ config.base[12]: RUN_ENVIR=emc | |
| +++ config.base[15]: export ACCOUNT=nems | |
| +++ config.base[15]: ACCOUNT=nems | |
| +++ config.base[16]: export ACCOUNT_SERVICE=fv3-cpu | |
| +++ config.base[16]: ACCOUNT_SERVICE=fv3-cpu | |
| +++ config.base[17]: export QUEUE=batch | |
| +++ config.base[17]: QUEUE=batch | |
| +++ config.base[18]: export QUEUE_SERVICE=batch | |
| +++ config.base[18]: QUEUE_SERVICE=batch | |
| +++ config.base[19]: export PARTITION_BATCH=hera | |
| +++ config.base[19]: PARTITION_BATCH=hera | |
| +++ config.base[20]: export PARTITION_SERVICE=service | |
| +++ config.base[20]: PARTITION_SERVICE=service | |
| +++ config.base[21]: export RESERVATION= | |
| +++ config.base[21]: RESERVATION= | |
| +++ config.base[24]: export HPSS_PROJECT=emc-global | |
| +++ config.base[24]: HPSS_PROJECT=emc-global | |
| +++ config.base[27]: export HOMEgfs=/scratch1/NCEPDEV/global/CI/2724/gfs | |
| +++ config.base[27]: HOMEgfs=/scratch1/NCEPDEV/global/CI/2724/gfs | |
| +++ config.base[28]: export EXECgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/exec | |
| +++ config.base[28]: EXECgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/exec | |
| +++ config.base[29]: export FIXgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/fix | |
| +++ config.base[29]: FIXgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/fix | |
| +++ config.base[30]: export PARMgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/parm | |
| +++ config.base[30]: PARMgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/parm | |
| +++ config.base[31]: export SCRgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/scripts | |
| +++ config.base[31]: SCRgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/scripts | |
| +++ config.base[32]: export USHgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/ush | |
| +++ config.base[32]: USHgfs=/scratch1/NCEPDEV/global/CI/2724/gfs/ush | |
| +++ config.base[34]: export FIXam=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/am | |
| +++ config.base[34]: FIXam=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/am | |
| +++ config.base[35]: export FIXaer=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/aer | |
| +++ config.base[35]: FIXaer=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/aer | |
| +++ config.base[36]: export FIXcpl=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/cpl | |
| +++ config.base[36]: FIXcpl=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/cpl | |
| +++ config.base[37]: export FIXlut=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/lut | |
| +++ config.base[37]: FIXlut=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/lut | |
| +++ config.base[38]: export FIXcice=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/cice | |
| +++ config.base[38]: FIXcice=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/cice | |
| +++ config.base[39]: export FIXmom=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/mom6 | |
| +++ config.base[39]: FIXmom=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/mom6 | |
| +++ config.base[40]: export FIXreg2grb2=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/reg2grb2 | |
| +++ config.base[40]: FIXreg2grb2=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/reg2grb2 | |
| +++ config.base[41]: export FIXgdas=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gdas | |
| +++ config.base[41]: FIXgdas=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gdas | |
| +++ config.base[46]: export PACKAGEROOT=/scratch1/NCEPDEV/global/glopara/nwpara | |
| +++ config.base[46]: PACKAGEROOT=/scratch1/NCEPDEV/global/glopara/nwpara | |
| +++ config.base[47]: export COMROOT=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT | |
| +++ config.base[47]: COMROOT=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT | |
| +++ config.base[48]: export COMINsyn=/scratch1/NCEPDEV/global/glopara/com/gfs/prod/syndat | |
| +++ config.base[48]: COMINsyn=/scratch1/NCEPDEV/global/glopara/com/gfs/prod/syndat | |
| +++ config.base[49]: export DMPDIR=/scratch1/NCEPDEV/global/glopara/dump | |
| +++ config.base[49]: DMPDIR=/scratch1/NCEPDEV/global/glopara/dump | |
| +++ config.base[50]: export BASE_CPLIC=/scratch1/NCEPDEV/global/glopara/data/ICSDIR/prototype_ICs | |
| +++ config.base[50]: BASE_CPLIC=/scratch1/NCEPDEV/global/glopara/data/ICSDIR/prototype_ICs | |
| +++ config.base[54]: export COMINecmwf=/scratch1/NCEPDEV/global/glopara/data/external_gempak/ecmwf | |
| +++ config.base[54]: COMINecmwf=/scratch1/NCEPDEV/global/glopara/data/external_gempak/ecmwf | |
| +++ config.base[55]: export COMINnam=/scratch1/NCEPDEV/global/glopara/data/external_gempak/nam | |
| +++ config.base[55]: COMINnam=/scratch1/NCEPDEV/global/glopara/data/external_gempak/nam | |
| +++ config.base[56]: export COMINukmet=/scratch1/NCEPDEV/global/glopara/data/external_gempak/ukmet | |
| +++ config.base[56]: COMINukmet=/scratch1/NCEPDEV/global/glopara/data/external_gempak/ukmet | |
| +++ config.base[59]: export HOMEDIR=/scratch1/NCEPDEV/global/Terry.McGuinness | |
| +++ config.base[59]: HOMEDIR=/scratch1/NCEPDEV/global/Terry.McGuinness | |
| +++ config.base[60]: export STMP=/scratch1/NCEPDEV/stmp2/Terry.McGuinness | |
| +++ config.base[60]: STMP=/scratch1/NCEPDEV/stmp2/Terry.McGuinness | |
| +++ config.base[61]: export PTMP=/scratch1/NCEPDEV/stmp4/Terry.McGuinness | |
| +++ config.base[61]: PTMP=/scratch1/NCEPDEV/stmp4/Terry.McGuinness | |
| +++ config.base[62]: export NOSCRUB=/scratch1/NCEPDEV/global/Terry.McGuinness | |
| +++ config.base[62]: NOSCRUB=/scratch1/NCEPDEV/global/Terry.McGuinness | |
| +++ config.base[65]: export BASE_GIT=/scratch1/NCEPDEV/global/glopara/git | |
| +++ config.base[65]: BASE_GIT=/scratch1/NCEPDEV/global/glopara/git | |
| +++ config.base[68]: export DO_GOES=NO | |
| +++ config.base[68]: DO_GOES=NO | |
| +++ config.base[69]: export DO_BUFRSND=NO | |
| +++ config.base[69]: DO_BUFRSND=NO | |
| +++ config.base[70]: export DO_GEMPAK=NO | |
| +++ config.base[70]: DO_GEMPAK=NO | |
| +++ config.base[71]: export DO_AWIPS=NO | |
| +++ config.base[71]: DO_AWIPS=NO | |
| +++ config.base[72]: export DO_NPOESS=NO | |
| +++ config.base[72]: DO_NPOESS=NO | |
| +++ config.base[73]: export DO_TRACKER=YES | |
| +++ config.base[73]: DO_TRACKER=YES | |
| +++ config.base[74]: export DO_GENESIS=YES | |
| +++ config.base[74]: DO_GENESIS=YES | |
| +++ config.base[75]: export DO_GENESIS_FSU=NO | |
| +++ config.base[75]: DO_GENESIS_FSU=NO | |
| +++ config.base[76]: export DO_VERFOZN=YES | |
| +++ config.base[76]: DO_VERFOZN=YES | |
| +++ config.base[77]: export DO_VERFRAD=YES | |
| +++ config.base[77]: DO_VERFRAD=YES | |
| +++ config.base[78]: export DO_VMINMON=YES | |
| +++ config.base[78]: DO_VMINMON=YES | |
| +++ config.base[79]: export DO_MOS=NO | |
| +++ config.base[79]: DO_MOS=NO | |
| +++ config.base[85]: export REALTIME=YES | |
| +++ config.base[85]: REALTIME=YES | |
| +++ config.base[88]: export MODE=cycled | |
| +++ config.base[88]: MODE=cycled | |
| +++ config.base[97]: export FIXgsi=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gsi | |
| +++ config.base[97]: FIXgsi=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gsi | |
| +++ config.base[98]: export HOMEpost=/scratch1/NCEPDEV/global/CI/2724/gfs | |
| +++ config.base[98]: HOMEpost=/scratch1/NCEPDEV/global/CI/2724/gfs | |
| +++ config.base[99]: export HOMEobsproc=/scratch1/NCEPDEV/global/glopara/git/obsproc/v1.1.2 | |
| +++ config.base[99]: HOMEobsproc=/scratch1/NCEPDEV/global/glopara/git/obsproc/v1.1.2 | |
| +++ config.base[102]: export 'NCP=/bin/cp -p' | |
| +++ config.base[102]: NCP='/bin/cp -p' | |
| +++ config.base[103]: export NMV=/bin/mv | |
| +++ config.base[103]: NMV=/bin/mv | |
| +++ config.base[104]: export 'NLN=/bin/ln -sf' | |
| +++ config.base[104]: NLN='/bin/ln -sf' | |
| +++ config.base[105]: export VERBOSE=YES | |
| +++ config.base[105]: VERBOSE=YES | |
| +++ config.base[106]: export KEEPDATA=NO | |
| +++ config.base[106]: KEEPDATA=NO | |
| +++ config.base[107]: export DEBUG_POSTSCRIPT=NO | |
| +++ config.base[107]: DEBUG_POSTSCRIPT=NO | |
| +++ config.base[108]: export CHGRP_RSTPROD=YES | |
| +++ config.base[108]: CHGRP_RSTPROD=YES | |
| +++ config.base[109]: export 'CHGRP_CMD=chgrp rstprod' | |
| +++ config.base[109]: CHGRP_CMD='chgrp rstprod' | |
| +++ config.base[110]: export NCDUMP=/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/netcdf-c-4.9.2-ejp7j3k/bin/ncdump/bin/ncdump | |
| +++ config.base[110]: NCDUMP=/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/netcdf-c-4.9.2-ejp7j3k/bin/ncdump/bin/ncdump | |
| +++ config.base[111]: export NCLEN=/scratch1/NCEPDEV/global/CI/2724/gfs/ush/getncdimlen | |
| +++ config.base[111]: NCLEN=/scratch1/NCEPDEV/global/CI/2724/gfs/ush/getncdimlen | |
| +++ config.base[114]: export BASE_ENV=/scratch1/NCEPDEV/global/CI/2724/gfs/env | |
| +++ config.base[114]: BASE_ENV=/scratch1/NCEPDEV/global/CI/2724/gfs/env | |
| +++ config.base[115]: export BASE_JOB=/scratch1/NCEPDEV/global/CI/2724/gfs/jobs/rocoto | |
| +++ config.base[115]: BASE_JOB=/scratch1/NCEPDEV/global/CI/2724/gfs/jobs/rocoto | |
| +++ config.base[118]: export SDATE=2021122012 | |
| +++ config.base[118]: SDATE=2021122012 | |
| +++ config.base[119]: export EDATE=2021122100 | |
| +++ config.base[119]: EDATE=2021122100 | |
| +++ config.base[120]: export EXP_WARM_START=.false. | |
| +++ config.base[120]: EXP_WARM_START=.false. | |
| +++ config.base[121]: export assim_freq=6 | |
| +++ config.base[121]: assim_freq=6 | |
| +++ config.base[122]: export PSLOT=C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[122]: PSLOT=C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[123]: export EXPDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[123]: EXPDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[124]: export ROTDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[124]: ROTDIR=/scratch1/NCEPDEV/global/CI/2724/RUNTESTS/COMROOT/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[125]: export ROTDIR_DUMP=YES | |
| +++ config.base[125]: ROTDIR_DUMP=YES | |
| +++ config.base[126]: export DUMP_SUFFIX= | |
| +++ config.base[126]: DUMP_SUFFIX= | |
| +++ config.base[127]: [[ 2021122100 -ge 2019092100 ]] | |
| +++ config.base[127]: [[ 2021122100 -le 2019110700 ]] | |
| +++ config.base[130]: export DATAROOT=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[130]: DATAROOT=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[131]: export ARCDIR=/scratch1/NCEPDEV/global/Terry.McGuinness/archive/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[131]: ARCDIR=/scratch1/NCEPDEV/global/Terry.McGuinness/archive/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[132]: export ATARDIR=/NCEPDEV/emc-global/1year/Terry.McGuinness/HERA/scratch/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[132]: ATARDIR=/NCEPDEV/emc-global/1year/Terry.McGuinness/HERA/scratch/C96_atmaerosnowDA_0661d4cd | |
| +++ config.base[135]: export envir=prod | |
| +++ config.base[135]: envir=prod | |
| +++ config.base[136]: export NET=gfs | |
| +++ config.base[136]: NET=gfs | |
| +++ config.base[137]: export RUN=gfs | |
| +++ config.base[137]: RUN=gfs | |
| +++ config.base[143]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.com | |
| ++++ config.com[4]: echo 'BEGIN: config.com' | |
| BEGIN: config.com | |
| ++++ config.com[37]: [[ emc == \n\c\o ]] | |
| ++++ config.com[41]: COM_OBS_TMPL='${ROTDIR}/${RUN}.${YMD}/${HH}/obs' | |
| ++++ config.com[42]: COM_RTOFS_TMPL='${DMPDIR}' | |
| ++++ config.com[44]: declare -rx COM_OBS_TMPL COM_RTOFS_TMPL | |
| ++++ config.com[45]: declare -rx 'COM_OBSDMP_TMPL=${DMPDIR}/${DUMP}${DUMP_SUFFIX}.${YMD}/${HH}/atmos' | |
| ++++ config.com[47]: COM_BASE='${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}' | |
| ++++ config.com[49]: declare -rx 'COM_TOP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}' | |
| ++++ config.com[51]: declare -rx 'COM_CONF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/conf' | |
| ++++ config.com[52]: declare -rx 'COM_OBS_JEDI=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/obs_jedi' | |
| ++++ config.com[54]: declare -rx 'COM_ATMOS_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/input' | |
| ++++ config.com[55]: declare -rx 'COM_ATMOS_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/restart' | |
| ++++ config.com[56]: declare -rx 'COM_ATMOS_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/atmos' | |
| ++++ config.com[57]: declare -rx 'COM_SNOW_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow' | |
| ++++ config.com[58]: declare -rx 'COM_ATMOS_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/history' | |
| ++++ config.com[59]: declare -rx 'COM_ATMOS_MASTER_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/master' | |
| ++++ config.com[60]: declare -rx 'COM_ATMOS_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2' | |
| ++++ config.com[61]: declare -rx 'COM_ATMOS_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2/${GRID}' | |
| ++++ config.com[62]: declare -rx 'COM_ATMOS_BUFR_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr' | |
| ++++ config.com[63]: declare -rx 'COM_ATMOS_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}' | |
| ++++ config.com[64]: declare -rx 'COM_ATMOS_GENESIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital' | |
| ++++ config.com[65]: declare -rx 'COM_ATMOS_TRACK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks' | |
| ++++ config.com[66]: declare -rx 'COM_ATMOS_GOES_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/goes_sim' | |
| ++++ config.com[67]: declare -rx 'COM_ATMOS_IMAGERY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/imagery' | |
| ++++ config.com[68]: declare -rx 'COM_ATMOS_OZNMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon' | |
| ++++ config.com[69]: declare -rx 'COM_ATMOS_RADMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/radmon' | |
| ++++ config.com[70]: declare -rx 'COM_ATMOS_MINMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/minmon' | |
| ++++ config.com[71]: declare -rx 'COM_ATMOS_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/wmo' | |
| ++++ config.com[73]: declare -rx 'COM_WAVE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/restart' | |
| ++++ config.com[74]: declare -rx 'COM_WAVE_PREP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/prep' | |
| ++++ config.com[75]: declare -rx 'COM_WAVE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/history' | |
| ++++ config.com[76]: declare -rx 'COM_WAVE_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gridded' | |
| ++++ config.com[77]: declare -rx 'COM_WAVE_STATION_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/station' | |
| ++++ config.com[78]: declare -rx 'COM_WAVE_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gempak' | |
| ++++ config.com[79]: declare -rx 'COM_WAVE_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/wmo' | |
| ++++ config.com[81]: declare -rx 'COM_OCEAN_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/history' | |
| ++++ config.com[82]: declare -rx 'COM_OCEAN_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/restart' | |
| ++++ config.com[83]: declare -rx 'COM_OCEAN_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/input' | |
| ++++ config.com[84]: declare -rx 'COM_OCEAN_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ocean' | |
| ++++ config.com[85]: declare -rx 'COM_OCEAN_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/netcdf' | |
| ++++ config.com[86]: declare -rx 'COM_OCEAN_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2' | |
| ++++ config.com[87]: declare -rx 'COM_OCEAN_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}' | |
| ++++ config.com[89]: declare -rx 'COM_ICE_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ice' | |
| ++++ config.com[90]: declare -rx 'COM_ICE_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/input' | |
| ++++ config.com[91]: declare -rx 'COM_ICE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/history' | |
| ++++ config.com[92]: declare -rx 'COM_ICE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/restart' | |
| ++++ config.com[93]: declare -rx 'COM_ICE_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/netcdf' | |
| ++++ config.com[94]: declare -rx 'COM_ICE_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2' | |
| ++++ config.com[95]: declare -rx 'COM_ICE_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}' | |
| ++++ config.com[97]: declare -rx 'COM_CHEM_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/chem/history' | |
| ++++ config.com[98]: declare -rx 'COM_CHEM_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem' | |
| ++++ config.com[100]: declare -rx 'COM_MED_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/med/restart' | |
| +++ config.base[146]: export 'ERRSCRIPT=eval [[ $err = 0 ]]' | |
| +++ config.base[146]: ERRSCRIPT='eval [[ $err = 0 ]]' | |
| +++ config.base[147]: export LOGSCRIPT= | |
| +++ config.base[147]: LOGSCRIPT= | |
| +++ config.base[150]: export 'REDOUT=1>' | |
| +++ config.base[150]: REDOUT='1>' | |
| +++ config.base[151]: export 'REDERR=2>' | |
| +++ config.base[151]: REDERR='2>' | |
| +++ config.base[153]: export SENDECF=NO | |
| +++ config.base[153]: SENDECF=NO | |
| +++ config.base[154]: export SENDSDM=NO | |
| +++ config.base[154]: SENDSDM=NO | |
| +++ config.base[155]: export SENDDBN_NTC=NO | |
| +++ config.base[155]: SENDDBN_NTC=NO | |
| +++ config.base[156]: export SENDDBN=NO | |
| +++ config.base[156]: SENDDBN=NO | |
| +++ config.base[157]: export DBNROOT=/fakedbn | |
| +++ config.base[157]: DBNROOT=/fakedbn | |
| +++ config.base[160]: export APP=ATMA | |
| +++ config.base[160]: APP=ATMA | |
| +++ config.base[162]: shopt -s extglob | |
| +++ config.base[164]: case "${RUN}" in | |
| +++ config.base[171]: shopt -u extglob | |
| +++ config.base[174]: export DO_ATM=YES | |
| +++ config.base[174]: DO_ATM=YES | |
| +++ config.base[175]: export DO_COUPLED=NO | |
| +++ config.base[175]: DO_COUPLED=NO | |
| +++ config.base[176]: export DO_WAVE=NO | |
| +++ config.base[176]: DO_WAVE=NO | |
| +++ config.base[177]: export DO_OCN=NO | |
| +++ config.base[177]: DO_OCN=NO | |
| +++ config.base[178]: export DO_ICE=NO | |
| +++ config.base[178]: DO_ICE=NO | |
| +++ config.base[179]: export DO_AERO=NO | |
| +++ config.base[179]: DO_AERO=NO | |
| +++ config.base[180]: export DO_PREP_OBS_AERO=NO | |
| +++ config.base[180]: DO_PREP_OBS_AERO=NO | |
| +++ config.base[181]: export AERO_FCST_CDUMP= | |
| +++ config.base[181]: AERO_FCST_CDUMP= | |
| +++ config.base[182]: export AERO_ANL_CDUMP= | |
| +++ config.base[182]: AERO_ANL_CDUMP= | |
| +++ config.base[183]: export WAVE_CDUMP= | |
| +++ config.base[183]: WAVE_CDUMP= | |
| +++ config.base[184]: export DOBNDPNT_WAVE=NO | |
| +++ config.base[184]: DOBNDPNT_WAVE=NO | |
| +++ config.base[185]: export DOIBP_WAV=NO | |
| +++ config.base[185]: DOIBP_WAV=NO | |
| +++ config.base[186]: export FRAC_GRID=.true. | |
| +++ config.base[186]: FRAC_GRID=.true. | |
| +++ config.base[187]: export DO_NEST=NO | |
| +++ config.base[187]: DO_NEST=NO | |
| +++ config.base[188]: [[ NO == \Y\E\S ]] | |
| +++ config.base[194]: export ntiles=6 | |
| +++ config.base[194]: ntiles=6 | |
| +++ config.base[195]: export FIXugwd=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/ugwd | |
| +++ config.base[195]: FIXugwd=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/ugwd | |
| +++ config.base[196]: export FIXorog=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/orog | |
| +++ config.base[196]: FIXorog=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/orog | |
| +++ config.base[200]: export OPS_RES=C768 | |
| +++ config.base[200]: OPS_RES=C768 | |
| +++ config.base[203]: export LEVS=128 | |
| +++ config.base[203]: LEVS=128 | |
| +++ config.base[204]: export CASE=C96 | |
| +++ config.base[204]: CASE=C96 | |
| +++ config.base[205]: export CASE_ENS=@CASEENS@ | |
| +++ config.base[205]: CASE_ENS=@CASEENS@ | |
| +++ config.base[206]: export OCNRES=500 | |
| +++ config.base[206]: OCNRES=500 | |
| +++ config.base[207]: export ICERES=500 | |
| +++ config.base[207]: ICERES=500 | |
| +++ config.base[210]: case "${CASE}" in | |
| +++ config.base[215]: export waveGRD=uglo_100km | |
| +++ config.base[215]: waveGRD=uglo_100km | |
| +++ config.base[229]: case "${APP}" in | |
| +++ config.base[233]: export DO_AERO=YES | |
| +++ config.base[233]: DO_AERO=YES | |
| +++ config.base[234]: export AERO_ANL_CDUMP=both | |
| +++ config.base[234]: AERO_ANL_CDUMP=both | |
| +++ config.base[235]: export AERO_FCST_CDUMP=gdas | |
| +++ config.base[235]: AERO_FCST_CDUMP=gdas | |
| +++ config.base[270]: [[ gfs =~ gdas ]] | |
| +++ config.base[273]: [[ gfs =~ gfs ]] | |
| +++ config.base[274]: export FHCYC=24 | |
| +++ config.base[274]: FHCYC=24 | |
| +++ config.base[278]: export FHMIN=0 | |
| +++ config.base[278]: FHMIN=0 | |
| +++ config.base[279]: export FHMAX=9 | |
| +++ config.base[279]: FHMAX=9 | |
| +++ config.base[280]: export FHOUT=3 | |
| +++ config.base[280]: FHOUT=3 | |
| +++ config.base[281]: export FHOUT_OCN=3 | |
| +++ config.base[281]: FHOUT_OCN=3 | |
| +++ config.base[282]: export FHOUT_ICE=3 | |
| +++ config.base[282]: FHOUT_ICE=3 | |
| +++ config.base[285]: export EUPD_CYC=gdas | |
| +++ config.base[285]: EUPD_CYC=gdas | |
| +++ config.base[288]: export gfs_cyc=1 | |
| +++ config.base[288]: gfs_cyc=1 | |
| +++ config.base[291]: export FHMIN_GFS=0 | |
| +++ config.base[291]: FHMIN_GFS=0 | |
| +++ config.base[292]: export FHMAX_GFS=120 | |
| +++ config.base[292]: FHMAX_GFS=120 | |
| +++ config.base[293]: export FHOUT_GFS=3 | |
| +++ config.base[293]: FHOUT_GFS=3 | |
| +++ config.base[294]: export FHMAX_HF_GFS=0 | |
| +++ config.base[294]: FHMAX_HF_GFS=0 | |
| +++ config.base[295]: export FHOUT_HF_GFS=1 | |
| +++ config.base[295]: FHOUT_HF_GFS=1 | |
| +++ config.base[296]: export FHOUT_OCN_GFS=6 | |
| +++ config.base[296]: FHOUT_OCN_GFS=6 | |
| +++ config.base[297]: export FHOUT_ICE_GFS=6 | |
| +++ config.base[297]: FHOUT_ICE_GFS=6 | |
| +++ config.base[298]: export FHMIN_WAV=0 | |
| +++ config.base[298]: FHMIN_WAV=0 | |
| +++ config.base[299]: export FHOUT_WAV=3 | |
| +++ config.base[299]: FHOUT_WAV=3 | |
| +++ config.base[300]: export FHMAX_HF_WAV=120 | |
| +++ config.base[300]: FHMAX_HF_WAV=120 | |
| +++ config.base[301]: export FHOUT_HF_WAV=1 | |
| +++ config.base[301]: FHOUT_HF_WAV=1 | |
| +++ config.base[302]: export FHMAX_WAV=9 | |
| +++ config.base[302]: FHMAX_WAV=9 | |
| +++ config.base[303]: export FHMAX_WAV_GFS=120 | |
| +++ config.base[303]: FHMAX_WAV_GFS=120 | |
| +++ config.base[304]: (( gfs_cyc != 0 )) | |
| +++ config.base[305]: export STEP_GFS=24 | |
| +++ config.base[305]: STEP_GFS=24 | |
| +++ config.base[310]: export ILPOST=1 | |
| +++ config.base[310]: ILPOST=1 | |
| +++ config.base[311]: (( FHMAX_HF_GFS < 120 )) | |
| +++ config.base[312]: export ILPOST=3 | |
| +++ config.base[312]: ILPOST=3 | |
| +++ config.base[316]: export restart_interval_gfs=12 | |
| +++ config.base[316]: restart_interval_gfs=12 | |
| +++ config.base[321]: export QUILTING=.true. | |
| +++ config.base[321]: QUILTING=.true. | |
| +++ config.base[322]: export OUTPUT_GRID=gaussian_grid | |
| +++ config.base[322]: OUTPUT_GRID=gaussian_grid | |
| +++ config.base[323]: export WRITE_DOPOST=.true. | |
| +++ config.base[323]: WRITE_DOPOST=.true. | |
| +++ config.base[324]: export WRITE_NSFLIP=.true. | |
| +++ config.base[324]: WRITE_NSFLIP=.true. | |
| +++ config.base[327]: export DOIAU=YES | |
| +++ config.base[327]: DOIAU=YES | |
| +++ config.base[328]: export IAUFHRS=3,6,9 | |
| +++ config.base[328]: IAUFHRS=3,6,9 | |
| +++ config.base[329]: export IAU_FHROT=3 | |
| +++ config.base[329]: IAU_FHROT=3 | |
| +++ config.base[330]: export IAU_DELTHRS=6 | |
| +++ config.base[330]: IAU_DELTHRS=6 | |
| +++ config.base[331]: export IAU_OFFSET=6 | |
| +++ config.base[331]: IAU_OFFSET=6 | |
| +++ config.base[332]: export DOIAU_ENKF=YES | |
| +++ config.base[332]: DOIAU_ENKF=YES | |
| +++ config.base[333]: export IAUFHRS_ENKF=3,6,9 | |
| +++ config.base[333]: IAUFHRS_ENKF=3,6,9 | |
| +++ config.base[334]: export IAU_DELTHRS_ENKF=6 | |
| +++ config.base[334]: IAU_DELTHRS_ENKF=6 | |
| +++ config.base[337]: export lobsdiag_forenkf=.true. | |
| +++ config.base[337]: lobsdiag_forenkf=.true. | |
| +++ config.base[345]: export imp_physics=8 | |
| +++ config.base[345]: imp_physics=8 | |
| +++ config.base[349]: export DO_JEDIATMVAR=NO | |
| +++ config.base[349]: DO_JEDIATMVAR=NO | |
| +++ config.base[350]: export DO_JEDIATMENS=NO | |
| +++ config.base[350]: DO_JEDIATMENS=NO | |
| +++ config.base[351]: export DO_JEDIOCNVAR=NO | |
| +++ config.base[351]: DO_JEDIOCNVAR=NO | |
| +++ config.base[352]: export DO_JEDISNOWDA=YES | |
| +++ config.base[352]: DO_JEDISNOWDA=YES | |
| +++ config.base[353]: export DO_MERGENSST=NO | |
| +++ config.base[353]: DO_MERGENSST=NO | |
| +++ config.base[356]: export DOHYBVAR=NO | |
| +++ config.base[356]: DOHYBVAR=NO | |
| +++ config.base[357]: export NMEM_ENS=0 | |
| +++ config.base[357]: NMEM_ENS=0 | |
| +++ config.base[358]: export SMOOTH_ENKF=NO | |
| +++ config.base[358]: SMOOTH_ENKF=NO | |
| +++ config.base[359]: export l4densvar=.true. | |
| +++ config.base[359]: l4densvar=.true. | |
| +++ config.base[360]: export lwrite4danl=.true. | |
| +++ config.base[360]: lwrite4danl=.true. | |
| +++ config.base[361]: export DO_CALC_INCREMENT=NO | |
| +++ config.base[361]: DO_CALC_INCREMENT=NO | |
| +++ config.base[364]: export NMEM_ENS_GFS=30 | |
| +++ config.base[364]: NMEM_ENS_GFS=30 | |
| +++ config.base[365]: export NMEM_ENS_GFS_OFFSET=20 | |
| +++ config.base[365]: NMEM_ENS_GFS_OFFSET=20 | |
| +++ config.base[366]: export DO_CALC_INCREMENT_ENKF_GFS=NO | |
| +++ config.base[366]: DO_CALC_INCREMENT_ENKF_GFS=NO | |
| +++ config.base[369]: [[ NO = \Y\E\S ]] | |
| +++ config.base[383]: [[ NO == \N\O ]] | |
| +++ config.base[383]: [[ YES == \Y\E\S ]] | |
| +++ config.base[384]: export IAUFHRS=6 | |
| +++ config.base[384]: IAUFHRS=6 | |
| +++ config.base[385]: export IAU_FHROT=3 | |
| +++ config.base[385]: IAU_FHROT=3 | |
| +++ config.base[386]: export IAU_FILTER_INCREMENTS=.true. | |
| +++ config.base[386]: IAU_FILTER_INCREMENTS=.true. | |
| +++ config.base[387]: export IAUFHRS_ENKF=6 | |
| +++ config.base[387]: IAUFHRS_ENKF=6 | |
| +++ config.base[391]: export ENKF_SPREAD=YES | |
| +++ config.base[391]: ENKF_SPREAD=YES | |
| +++ config.base[394]: [[ cycled = \c\y\c\l\e\d ]] | |
| +++ config.base[394]: [[ 2021122012 = \2\0\2\1\1\2\2\1\0\0 ]] | |
| +++ config.base[394]: [[ YES = \N\O ]] | |
| +++ config.base[394]: [[ cycled = \f\o\r\e\c\a\s\t\-\o\n\l\y ]] | |
| +++ config.base[400]: [[ YES = \N\O ]] | |
| +++ config.base[404]: [[ YES == \Y\E\S ]] | |
| +++ config.base[405]: export restart_interval_enkfgdas=3 | |
| +++ config.base[405]: restart_interval_enkfgdas=3 | |
| +++ config.base[410]: export restart_interval_enkfgfs=3 | |
| +++ config.base[410]: restart_interval_enkfgfs=3 | |
| +++ config.base[412]: [[ YES == \Y\E\S ]] | |
| +++ config.base[413]: export restart_interval_gdas=3 | |
| +++ config.base[413]: restart_interval_gdas=3 | |
| +++ config.base[418]: export GSI_SOILANAL=NO | |
| +++ config.base[418]: GSI_SOILANAL=NO | |
| +++ config.base[421]: export DONST=YES | |
| +++ config.base[421]: DONST=YES | |
| +++ config.base[422]: [[ YES = \Y\E\S ]] | |
| +++ config.base[422]: export 'FNTSFA= ' | |
| +++ config.base[422]: FNTSFA=' ' | |
| +++ config.base[425]: export nst_anl=.true. | |
| +++ config.base[425]: nst_anl=.true. | |
| +++ config.base[428]: export MAKE_NSSTBUFR=NO | |
| +++ config.base[428]: MAKE_NSSTBUFR=NO | |
| +++ config.base[431]: export MAKE_ACFTBUFR=NO | |
| +++ config.base[431]: MAKE_ACFTBUFR=NO | |
| +++ config.base[434]: export 'INCREMENTS_TO_ZERO='\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[434]: INCREMENTS_TO_ZERO=''\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[437]: export 'INCVARS_ZERO_STRAT='\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[437]: INCVARS_ZERO_STRAT=''\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[438]: export INCVARS_EFOLD=5 | |
| +++ config.base[438]: INCVARS_EFOLD=5 | |
| +++ config.base[443]: export netcdf_diag=.true. | |
| +++ config.base[443]: netcdf_diag=.true. | |
| +++ config.base[444]: export binary_diag=.false. | |
| +++ config.base[444]: binary_diag=.false. | |
| +++ config.base[447]: export DO_METP=YES | |
| +++ config.base[447]: DO_METP=YES | |
| +++ config.base[448]: export DO_FIT2OBS=YES | |
| +++ config.base[448]: DO_FIT2OBS=YES | |
| +++ config.base[449]: export DO_VRFY_OCEANDA=NO | |
| +++ config.base[449]: DO_VRFY_OCEANDA=NO | |
| +++ config.base[452]: export FHMAX_FITS=132 | |
| +++ config.base[452]: FHMAX_FITS=132 | |
| +++ config.base[453]: [[ 132 -gt 120 ]] | |
| +++ config.base[453]: export FHMAX_FITS=120 | |
| +++ config.base[453]: FHMAX_FITS=120 | |
| +++ config.base[456]: export HPSSARCH=YES | |
| +++ config.base[456]: HPSSARCH=YES | |
| +++ config.base[457]: export LOCALARCH=NO | |
| +++ config.base[457]: LOCALARCH=NO | |
| +++ config.base[458]: [[ YES = \Y\E\S ]] | |
| +++ config.base[458]: [[ NO = \Y\E\S ]] | |
| +++ config.base[462]: export ARCH_CYC=00 | |
| +++ config.base[462]: ARCH_CYC=00 | |
| +++ config.base[463]: export ARCH_WARMICFREQ=4 | |
| +++ config.base[463]: ARCH_WARMICFREQ=4 | |
| +++ config.base[464]: export ARCH_FCSTICFREQ=1 | |
| +++ config.base[464]: ARCH_FCSTICFREQ=1 | |
| +++ config.base[467]: [[ NO = \Y\E\S ]] | |
| +++ config.base[474]: export REPLAY_ICS=NO | |
| +++ config.base[474]: REPLAY_ICS=NO | |
| +++ config.base[475]: export OFFSET_START_HOUR=0 | |
| +++ config.base[475]: OFFSET_START_HOUR=0 | |
| +++ config.base[478]: export NUM_SND_COLLECTIVES=9 | |
| +++ config.base[478]: NUM_SND_COLLECTIVES=9 | |
| +++ config.base[480]: echo 'END: config.base' | |
| END: config.base | |
| ++ jjob_header.sh[99]: status=0 | |
| ++ jjob_header.sh[100]: (( status != 0 )) | |
| ++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
| ++ jjob_header.sh[98]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.aeroanl | |
| +++ config.aeroanl[6]: echo 'BEGIN: config.aeroanl' | |
| BEGIN: config.aeroanl | |
| +++ config.aeroanl[8]: export CASE_ANL=C96 | |
| +++ config.aeroanl[8]: CASE_ANL=C96 | |
| +++ config.aeroanl[9]: export OBS_LIST=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/obs/lists/gdas_aero.yaml.j2 | |
| +++ config.aeroanl[9]: OBS_LIST=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/obs/lists/gdas_aero.yaml.j2 | |
| +++ config.aeroanl[10]: export STATICB_TYPE=identity | |
| +++ config.aeroanl[10]: STATICB_TYPE=identity | |
| +++ config.aeroanl[11]: export BERROR_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/berror/staticb_identity.yaml.j2 | |
| +++ config.aeroanl[11]: BERROR_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/berror/staticb_identity.yaml.j2 | |
| +++ config.aeroanl[12]: export BERROR_DATA_DIR=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gdas/bump/aero/C96/ | |
| +++ config.aeroanl[12]: BERROR_DATA_DIR=/scratch1/NCEPDEV/global/CI/2724/gfs/fix/gdas/bump/aero/C96/ | |
| +++ config.aeroanl[13]: export BERROR_DATE=20160630.000000 | |
| +++ config.aeroanl[13]: BERROR_DATE=20160630.000000 | |
| +++ config.aeroanl[15]: export CRTM_FIX_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero_crtm_coeff.yaml.j2 | |
| +++ config.aeroanl[15]: CRTM_FIX_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero_crtm_coeff.yaml.j2 | |
| +++ config.aeroanl[16]: export JEDI_FIX_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero_jedi_fix.yaml.j2 | |
| +++ config.aeroanl[16]: JEDI_FIX_YAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero_jedi_fix.yaml.j2 | |
| +++ config.aeroanl[18]: export io_layout_x=1 | |
| +++ config.aeroanl[18]: io_layout_x=1 | |
| +++ config.aeroanl[19]: export io_layout_y=1 | |
| +++ config.aeroanl[19]: io_layout_y=1 | |
| +++ config.aeroanl[21]: export JEDIEXE=/scratch1/NCEPDEV/global/CI/2724/gfs/exec/gdas.x | |
| +++ config.aeroanl[21]: JEDIEXE=/scratch1/NCEPDEV/global/CI/2724/gfs/exec/gdas.x | |
| +++ config.aeroanl[23]: [[ YES == \Y\E\S ]] | |
| +++ config.aeroanl[24]: export aero_bkg_times=3,6,9 | |
| +++ config.aeroanl[24]: aero_bkg_times=3,6,9 | |
| +++ config.aeroanl[25]: export JEDIYAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/variational/3dvar_fgat_gfs_aero.yaml.j2 | |
| +++ config.aeroanl[25]: JEDIYAML=/scratch1/NCEPDEV/global/CI/2724/gfs/parm/gdas/aero/variational/3dvar_fgat_gfs_aero.yaml.j2 | |
| +++ config.aeroanl[31]: echo 'END: config.aeroanl' | |
| END: config.aeroanl | |
| ++ jjob_header.sh[99]: status=0 | |
| ++ jjob_header.sh[100]: (( status != 0 )) | |
| ++ jjob_header.sh[97]: for config in "${configs[@]:-''}" | |
| ++ jjob_header.sh[98]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.aeroanlrun | |
| +++ config.aeroanlrun[6]: echo 'BEGIN: config.aeroanlrun' | |
| BEGIN: config.aeroanlrun | |
| +++ config.aeroanlrun[9]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.resources aeroanlrun | |
| ++++ config.resources[9]: (( 1 != 1 )) | |
| ++++ config.resources[33]: step=aeroanlrun | |
| ++++ config.resources[35]: echo 'BEGIN: config.resources' | |
| BEGIN: config.resources | |
| ++++ config.resources[37]: case ${machine} in | |
| ++++ config.resources[44]: npe_node_max=40 | |
| ++++ config.resources[46]: mem_node_max=96GB | |
| ++++ config.resources[125]: export npe_node_max | |
| ++++ config.resources[127]: case ${step} in | |
| ++++ config.resources[417]: case ${CASE} in | |
| ++++ config.resources[427]: layout_x=8 | |
| ++++ config.resources[428]: layout_y=8 | |
| ++++ config.resources[440]: export layout_x | |
| ++++ config.resources[441]: export layout_y | |
| ++++ config.resources[443]: export wtime_aeroanlrun=00:30:00 | |
| ++++ config.resources[443]: wtime_aeroanlrun=00:30:00 | |
| ++++ config.resources[444]: export npe_aeroanlrun_gdas=384 | |
| ++++ config.resources[444]: npe_aeroanlrun_gdas=384 | |
| ++++ config.resources[445]: export npe_aeroanlrun_gfs=384 | |
| ++++ config.resources[445]: npe_aeroanlrun_gfs=384 | |
| ++++ config.resources[446]: export nth_aeroanlrun_gdas=1 | |
| ++++ config.resources[446]: nth_aeroanlrun_gdas=1 | |
| ++++ config.resources[447]: export nth_aeroanlrun_gfs=1 | |
| ++++ config.resources[447]: nth_aeroanlrun_gfs=1 | |
| ++++ config.resources[448]: export npe_node_aeroanlrun_gdas=40 | |
| ++++ config.resources[448]: npe_node_aeroanlrun_gdas=40 | |
| ++++ config.resources[449]: export npe_node_aeroanlrun_gfs=40 | |
| ++++ config.resources[449]: npe_node_aeroanlrun_gfs=40 | |
| ++++ config.resources[450]: export is_exclusive=True | |
| ++++ config.resources[450]: is_exclusive=True | |
| ++++ config.resources[452]: var_npe_node=npe_node_aeroanlrun_gfs | |
| ++++ config.resources[453]: var_nth=nth_aeroanlrun_gfs | |
| ++++ config.resources[454]: var_npe=npe_aeroanlrun_gfs | |
| ++++ config.resources[455]: [[ -n 0 ]] | |
| ++++ config.resources[456]: declare -x npe_node_aeroanlrun=40 nth_aeroanlrun=1 npe_aeroanlrun=384 | |
| ++++ config.resources[1394]: unset var_NTASKS var_npe var_npe_node var_nth | |
| ++++ config.resources[1400]: [[ -f /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.resources.HERA ]] | |
| ++++ config.resources[1401]: source /scratch1/NCEPDEV/global/CI/2724/RUNTESTS/EXPDIR/C96_atmaerosnowDA_0661d4cd/config.resources.HERA | |
| +++++ config.resources.HERA[5]: case ${step} in | |
| ++++ config.resources[1404]: echo 'END: config.resources' | |
| END: config.resources | |
| +++ config.aeroanlrun[11]: echo 'END: config.aeroanlrun' | |
| END: config.aeroanlrun | |
| ++ jjob_header.sh[99]: status=0 | |
| ++ jjob_header.sh[100]: (( status != 0 )) | |
| ++ jjob_header.sh[110]: source /scratch1/NCEPDEV/global/CI/2724/gfs/env/HERA.env aeroanlrun | |
| +++ HERA.env[3]: [[ 1 -ne 1 ]] | |
| +++ HERA.env[10]: step=aeroanlrun | |
| +++ HERA.env[12]: export 'launcher=srun -l --export=ALL' | |
| +++ HERA.env[12]: launcher='srun -l --export=ALL' | |
| +++ HERA.env[13]: export 'mpmd_opt=--multi-prog --output=mpmd.%j.%t.out' | |
| +++ HERA.env[13]: mpmd_opt='--multi-prog --output=mpmd.%j.%t.out' | |
| +++ HERA.env[24]: export OMP_STACKSIZE=2048000 | |
| +++ HERA.env[24]: OMP_STACKSIZE=2048000 | |
| +++ HERA.env[25]: export NTHSTACK=1024000000 | |
| +++ HERA.env[25]: NTHSTACK=1024000000 | |
| +++ HERA.env[29]: [[ -n 62502286 ]] | |
| +++ HERA.env[30]: ulimit -s unlimited | |
| +++ HERA.env[31]: ulimit -a | |
| core file size (blocks, -c) unlimited | |
| data seg size (kbytes, -d) unlimited | |
| scheduling priority (-e) 0 | |
| file size (blocks, -f) unlimited | |
| pending signals (-i) 379964 | |
| max locked memory (kbytes, -l) unlimited | |
| max memory size (kbytes, -m) 94208000 | |
| open files (-n) 131072 | |
| pipe size (512 bytes, -p) 8 | |
| POSIX message queues (bytes, -q) 819200 | |
| real-time priority (-r) 0 | |
| stack size (kbytes, -s) unlimited | |
| cpu time (seconds, -t) unlimited | |
| max user processes (-u) 379964 | |
| virtual memory (kbytes, -v) unlimited | |
| file locks (-x) unlimited | |
| +++ HERA.env[34]: [[ aeroanlrun = \p\r\e\p ]] | |
| +++ HERA.env[34]: [[ aeroanlrun = \p\r\e\p\b\u\f\r ]] | |
| +++ HERA.env[43]: [[ aeroanlrun = \p\r\e\p\s\n\o\w\o\b\s ]] | |
| +++ HERA.env[47]: [[ aeroanlrun = \p\r\e\p\_\e\m\i\s\s\i\o\n\s ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\i\n\i\t ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\r\e\p ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\o\s\t\s\b\s ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\o\s\t\b\n\d\p\n\t ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\o\s\t\b\n\d\p\n\t\b\l\l ]] | |
| +++ HERA.env[51]: [[ aeroanlrun = \w\a\v\e\p\o\s\t\p\n\t ]] | |
| +++ HERA.env[58]: [[ aeroanlrun = \a\t\m\a\n\l\v\a\r ]] | |
| +++ HERA.env[66]: [[ aeroanlrun = \a\t\m\e\n\s\a\n\l\l\e\t\k\f ]] | |
| +++ HERA.env[74]: [[ aeroanlrun = \a\t\m\e\n\s\a\n\l\f\v\3\i\n\c ]] | |
| +++ HERA.env[82]: [[ aeroanlrun = \a\e\r\o\a\n\l\r\u\n ]] | |
| +++ HERA.env[84]: export 'APRUNCFP=srun -l --export=ALL -n $ncmd --multi-prog --output=mpmd.%j.%t.out' | |
| +++ HERA.env[84]: APRUNCFP='srun -l --export=ALL -n $ncmd --multi-prog --output=mpmd.%j.%t.out' | |
| +++ HERA.env[86]: nth_max=1 | |
| +++ HERA.env[88]: export NTHREADS_AEROANL=1 | |
| +++ HERA.env[88]: NTHREADS_AEROANL=1 | |
| +++ HERA.env[89]: [[ 1 -gt 1 ]] | |
| +++ HERA.env[90]: export 'APRUN_AEROANL=srun -l --export=ALL -n 384 --cpus-per-task=1' | |
| +++ HERA.env[90]: APRUN_AEROANL='srun -l --export=ALL -n 384 --cpus-per-task=1' | |
| ++ jjob_header.sh[111]: status=0 | |
| ++ jjob_header.sh[112]: (( status != 0 )) | |
| + JGLOBAL_AERO_ANALYSIS_RUN[19]: EXSCRIPT=/scratch1/NCEPDEV/global/CI/2724/gfs/scripts/exglobal_aero_analysis_run.py | |
| + JGLOBAL_AERO_ANALYSIS_RUN[20]: /scratch1/NCEPDEV/global/CI/2724/gfs/scripts/exglobal_aero_analysis_run.py | |
| [38;21m2024-06-27 00:12:13,041 - INFO - aero_analysis: BEGIN: AerosolAnalysis.__init__[0m | |
| [38;5;39m2024-06-27 00:12:13,043 - DEBUG - aero_analysis: ( <pygfs.task.aero_analysis.AerosolAnalysis object at 0x14cdcc90ba30>, {'envir': 'prod', 'HYDRA_LAUNCHER_EXTRA_ARGS': '--external-launcher', 'FRAC_GRID': True, 'waveGRD': 'uglo_100km', '_ModuleTable051_': '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', 'py_pycodestyle_ROOT': '/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-pycodestyle-2.11.0-opcwzxa', '_ModuleTable070_': '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', 'INCVARS_ZERO_STRAT': "'sphum_inc','liq_wat_inc','icmr_inc','rwmr_inc','snmr_inc','grle_inc'", '_ModuleTable037_': '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', 'COM_SNOW_ANALYSIS_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow', 'SLURM_MEM_PER_CPU': 2300, '_ModuleTable064_': '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', 'LD_LIBRARY_PATH': 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'/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/intel/2021.5.0/py-openpyxl-3.1.2-rv2hu6u', 'SCRgfs': '/scratch1/NCEPDEV/global/CI/2724/gfs/scripts', 'LMOD_FAMILY_MPI': 'impi', '_ModuleTable075_': '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', 'BASH_FUNC_module%%': '() { if [ -z "${LMOD_SH_DBG_ON+x}" ]; then\n case "$-" in \n *v*x*)\n __lmod_sh_dbg=\'vx\'\n ;;\n *v*)\n __lmod_sh_dbg=\'v\'\n ;;\n *x*)\n __lmod_sh_dbg=\'x\'\n ;;\n esac;\n fi;\n if [ -n "${__lmod_sh_dbg:-}" ]; then\n set +$__lmod_sh_dbg;\n echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod\'s output" 1>&2;\n fi;\n eval "$($LMOD_CMD shell "$@")" && eval "$(${LMOD_SETTARG_CMD:-:} -s sh)";\n __lmod_my_status=$?;\n if [ -n "${__lmod_sh_dbg:-}" ]; then\n echo "Shell debugging restarted" 1>&2;\n set -$__lmod_sh_dbg;\n fi;\n unset __lmod_sh_dbg;\n return $__lmod_my_status\n}', 'BASH_FUNC_declare_from_tmpl%%': '() { if [[ ${DEBUG_WORKFLOW:-"NO"} == "NO" ]]; then\n set +x;\n fi;\n local opts="-g";\n local OPTIND=1;\n while getopts "rx" option; do\n opts="${opts}${option}";\n done;\n shift $((OPTIND-1));\n for input in "$@";\n do\n IFS=\':\' read -ra args <<< "${input}";\n local com_var="${args[0]}";\n local template;\n local value;\n if (( ${#args[@]} > 1 )); then\n template="${args[1]}";\n else\n template="${com_var}_TMPL";\n fi;\n if [[ ! -v "${template}" ]]; then\n echo "FATAL ERROR in declare_from_tmpl: Requested template ${template} not defined!";\n exit 2;\n fi;\n value=$(echo "${!template}" | envsubst);\n declare ${opts} "${com_var}"="${value}";\n echo "declare_from_tmpl :: ${com_var}=${value}";\n done;\n set_trace\n}', 'BASH_FUNC_wait_for_file%%': '() { set +x;\n local file_name=${1:?"wait_for_file() requires a file name"};\n local sleep_interval=${2:-60};\n local max_tries=${3:-100};\n for ((iter=0; iter<max_tries; iter++ ))\n do\n if [[ -r ${file_name} ]]; then\n set_trace;\n return 0;\n fi;\n sleep "${sleep_interval}";\n done;\n set_trace;\n return 1\n}', 'BASH_FUNC_ml%%': '() { eval "$($LMOD_DIR/ml_cmd "$@")"\n}', '_': '/scratch1/NCEPDEV/global/CI/2724/gfs/scripts/exglobal_aero_analysis_run.py', 'LC_CTYPE': 'C.UTF-8'} )[0m | |
| [38;5;39m2024-06-27 00:12:13,045 - DEBUG - task : Deleting runtime_key PDY from config[0m | |
| [38;5;39m2024-06-27 00:12:13,045 - DEBUG - task : Deleting runtime_key cyc from config[0m | |
| [38;5;39m2024-06-27 00:12:13,045 - DEBUG - task : Deleting runtime_key DATA from config[0m | |
| [38;5;39m2024-06-27 00:12:13,045 - DEBUG - task : Deleting runtime_key RUN from config[0m | |
| [38;5;39m2024-06-27 00:12:13,045 - DEBUG - task : Deleting runtime_key CDUMP from config[0m | |
| [38;5;39m2024-06-27 00:12:13,045 - DEBUG - task : current cycle: 2021-12-21 00:00:00[0m | |
| [38;5;39m2024-06-27 00:12:13,045 - DEBUG - task : previous cycle: 2021-12-20 18:00:00[0m | |
| [38;21m2024-06-27 00:12:13,047 - INFO - aero_analysis: END: AerosolAnalysis.__init__[0m | |
| [38;5;39m2024-06-27 00:12:13,047 - DEBUG - aero_analysis: returning: None[0m | |
| [38;21m2024-06-27 00:12:13,047 - INFO - aero_analysis: BEGIN: pygfs.task.aero_analysis.execute[0m | |
| [38;5;39m2024-06-27 00:12:13,047 - DEBUG - aero_analysis: ( <pygfs.task.aero_analysis.AerosolAnalysis object at 0x14cdcc90ba30> )[0m | |
| [38;5;39m2024-06-27 00:12:13,047 - DEBUG - aero_analysis: Executing srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gfs.t00z.aerovar.yaml[0m | |
| srun: warning: can't honor --ntasks-per-node set to 40 which doesn't match the requested tasks 384 with the number of requested nodes 10. Ignoring --ntasks-per-node. | |
| 0: OOPS Starting 2024-06-27 00:12:19 (UTC+0000) | |
| 0: Configuration input file is: /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gfs.t00z.aerovar.yaml | |
| 0: Full configuration is:YAMLConfiguration[path=/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gfs.t00z.aerovar.yaml, root={cost function => {cost type => 3D-FGAT , time window => {begin => 2021-12-20T21:00:00Z , length => PT6H} , analysis variables => (mass_fraction_of_sulfate_in_air,mass_fraction_of_hydrophobic_black_carbon_in_air,mass_fraction_of_hydrophilic_black_carbon_in_air,mass_fraction_of_hydrophobic_organic_carbon_in_air,mass_fraction_of_hydrophilic_organic_carbon_in_air,mass_fraction_of_dust001_in_air,mass_fraction_of_dust002_in_air,mass_fraction_of_dust003_in_air,mass_fraction_of_dust004_in_air,mass_fraction_of_dust005_in_air,mass_fraction_of_sea_salt001_in_air,mass_fraction_of_sea_salt002_in_air,mass_fraction_of_sea_salt003_in_air,mass_fraction_of_sea_salt004_in_air) , geometry => {fms initialization => {namelist filename => ./fv3jedi/fmsmpp.nml , field table filename => ./fv3jedi/field_table} , akbk => ./fv3jedi/akbk.nc4 , layout => (8,8) , npx => 97 , npy | |
| 0: => 97 , npz => 127 , field metadata override => ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml} , model => {name => PSEUDO , datapath => ./bkg , filetype => fms restart , filename is datetime templated => true , tstep => PT3H , filename_core => %yyyy%mm%dd.%hh%MM%ss.fv_core.res.nc , filename_trcr => %yyyy%mm%dd.%hh%MM%ss.fv_tracer.res.nc , filename_cplr => %yyyy%mm%dd.%hh%MM%ss.coupler.res} , background => {datapath => ./bkg , filetype => fms restart , datetime => 2021-12-20T21:00:00Z , filename_core => 20211220.210000.fv_core.res.nc , filename_trcr => 20211220.210000.fv_tracer.res.nc , filename_cplr => 20211220.210000.coupler.res , state variables => (t,delp,sphum,so4,bc1,bc2,oc1,oc2,dust1,dust2,dust3,dust4,dust5,seas1,seas2,seas3,seas4)} , background error => {covariance model => FV3JEDI-ID , date => 2021-12-20T21:00:00Z} , observations => {observers => ({obs space => {name => viirs_n20_aod , obsdatain => {engine => {type => H5File , obsfile => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnow | |
| 0: DA_0661d4cd/gfsaeroanl_00/obs/gfs.t00z.viirs_n20.2021122100.nc4}} , obsdataout => {engine => {type => H5File , obsfile => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/diags/diag_viirs_n20_2021122100.nc4}} , io pool => {max pool size => 1} , simulated variables => (aerosolOpticalDepth) , channels => 4} , get values => {interpolation method => barycentric , time interpolation => linear} , obs operator => {name => AodCRTM , Absorbers => (H2O,O3) , obs options => {Sensor_ID => v.viirs-m_j1 , EndianType => little_endian , CoefficientPath => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/crtm/ , AerosolOption => aerosols_gocart_default}} , obs error => {covariance model => diagonal} , obs filters => ({filter => PreQC , maxvalue => 1},{filter => Domain Check , where => ({variable => {name => latitude@MetaData} , minvalue => -60 , maxvalue => 60})},{filter => Bounds Check , filter variables => ({name => aerosolOpticalDepth , chann | |
| 0: els => 4}) , minvalue => 0 , maxvalue => 4.9 , action => {name => reject}},{filter => Background Check , channels => 4 , threshold => 3 , action => {name => inflate error , inflation factor => 3}})},{obs space => {name => viirs_npp_aod , obsdatain => {engine => {type => H5File , obsfile => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/obs/gfs.t00z.viirs_npp.2021122100.nc4}} , obsdataout => {engine => {type => H5File , obsfile => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/diags/diag_viirs_npp_2021122100.nc4}} , io pool => {max pool size => 1} , simulated variables => (aerosolOpticalDepth) , channels => 4} , get values => {interpolation method => barycentric , time interpolation => linear} , obs operator => {name => AodCRTM , Absorbers => (H2O,O3) , obs options => {Sensor_ID => v.viirs-m_npp , EndianType => little_endian , CoefficientPath => /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsae | |
| 0: roanl_00/crtm/ , AerosolOption => aerosols_gocart_default}} , obs error => {covariance model => diagonal} , obs filters => ({filter => PreQC , maxvalue => 1},{filter => Domain Check , where => ({variable => {name => latitude@MetaData} , minvalue => -60 , maxvalue => 60})},{filter => Bounds Check , filter variables => ({name => aerosolOpticalDepth , channels => 4}) , minvalue => 0 , maxvalue => 4.9 , action => {name => reject}},{filter => Background Check , channels => 4 , threshold => 3 , action => {name => inflate error , inflation factor => 3}})})}} , variational => {minimizer => {algorithm => DRPCG} , iterations => ({ninner => 35 , gradient norm reduction => 1e-10 , test => true , geometry => {fms initialization => {namelist filename => ./fv3jedi/fmsmpp.nml , field table filename => ./fv3jedi/field_table} , akbk => ./fv3jedi/akbk.nc4 , layout => (8,8) , npx => 97 , npy => 97 , npz => 127 , field metadata override => ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml} , diagnostics => {departures => bkgmob}},{nin | |
| 0: ner => 35 , gradient norm reduction => 1e-10 , test => true , geometry => {fms initialization => {namelist filename => ./fv3jedi/fmsmpp.nml , field table filename => ./fv3jedi/field_table} , akbk => ./fv3jedi/akbk.nc4 , layout => (8,8) , npx => 97 , npy => 97 , npz => 127 , field metadata override => ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml} , diagnostics => {departures => bkgmob1}})} , final => {diagnostics => {departures => anlmob} , increment => {geometry => {fms initialization => {namelist filename => ./fv3jedi/fmsmpp.nml , field table filename => ./fv3jedi/field_table} , akbk => ./fv3jedi/akbk.nc4 , layout => (8,8) , npx => 97 , npy => 97 , npz => 127 , field metadata override => ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml} , output => {state component => {datapath => ./anl , prefix => aeroinc , filetype => fms restart , filename_core => 20211221.000000.fv_core.res.nc , filename_trcr => 20211221.000000.fv_tracer.res.nc , filename_cplr => 20211221.000000.coupler.res , state variables => (t,delp,sphum | |
| 0: ,so4,bc1,bc2,oc1,oc2,dust1,dust2,dust3,dust4,dust5,seas1,seas2,seas3,seas4)}}}}}] | |
| 0: OOPS_STATS ObjectCountHelper started. | |
| 0: OOPS_STATS Run start - Runtime: 1.58 sec, Memory: total: 48.99 Gb, per task: min = 123.90 Mb, max = 141.50 Mb | |
| 0: Run: Starting oops::Variational<FV3JEDI, UFO and IODA observations> | |
| 0: OOPS_STATS Variational start - Runtime: 1.58 sec, Local Memory: 144.79 Mb | |
| 0: | |
| 0: FATAL from PE 0: get_ascii_file_num_lines: File ./fv3jedi/fmsmpp.nml does not exist. | |
| 0: | |
| 0: | |
| 0: FATAL from PE 0: get_ascii_file_num_lines: File ./fv3jedi/fmsmpp.nml does not exist. | |
| 0: | |
| 0: Image PC Routine Line Source | |
| 0: libifcoremt.so.5 0000154EE0E81DCB tracebackqq_ Unknown Unknown | |
| 0: libfms.so 0000154EB964FA2E mpp_mod_mp_mpp_er Unknown Unknown | |
| 0: libfms.so 0000154EB9647228 mpp_mod_mp_get_as Unknown Unknown | |
| 0: libfms.so 0000154EB96469D3 mpp_mod_mp_read_i Unknown Unknown | |
| 0: libfms.so 0000154EB964BB8A mpp_mod_mp_mpp_in Unknown Unknown | |
| 0: libfms.so 0000154EB91E0EE3 fms_mod_mp_fms_in Unknown Unknown | |
| 0: libfv3jedi.so 0000154EE0323E5E fv3jedi_geom_mod_ Unknown Unknown | |
| 0: libfv3jedi.so 0000154EE02F33A7 fv3jedi_geom_init Unknown Unknown | |
| 0: libfv3jedi.so 0000154EE02B14EC _ZN7fv3jedi8Geome Unknown Unknown | |
| 0: gdas.x 00000000005CA665 Unknown Unknown Unknown | |
| 0: gdas.x 0000000000841DC5 Unknown Unknown Unknown | |
| 0: gdas.x 000000000065B89E Unknown Unknown Unknown | |
| 0: gdas.x 000000000065B769 Unknown Unknown Unknown | |
| 0: gdas.x 0000000000641A5F Unknown Unknown Unknown | |
| 0: gdas.x 000000000063F2A7 Unknown Unknown Unknown | |
| 0: liboops.so 0000154EB7048B1C _ZN4oops3Run7exec Unknown Unknown | |
| 0: gdas.x 00000000004DB410 Unknown Unknown Unknown | |
| 0: gdas.x 00000000004C6D9B Unknown Unknown Unknown | |
| 0: libc-2.28.so 0000154EAC120D85 __libc_start_main Unknown Unknown | |
| 0: gdas.x 00000000004C662E Unknown Unknown Unknown | |
| 0: Abort(1) on node 0 (rank 0 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0 | |
| 0: slurmstepd: error: *** STEP 62502286.0 ON h18c23 CANCELLED AT 2024-06-27T00:12:21 *** | |
| srun: Job step aborted: Waiting up to 32 seconds for job step to finish. | |
| srun: error: h18c38: tasks 156-193: Killed | |
| srun: Terminating StepId=62502286.0 | |
| srun: error: h18c46: tasks 346-383: Killed | |
| srun: error: h18c41: tasks 270-307: Killed | |
| srun: error: h18c42: tasks 308-345: Killed | |
| srun: error: h18c39: tasks 194-231: Killed | |
| srun: error: h18c25: tasks 39-77: Killed | |
| srun: error: h18c26: tasks 78-116: Killed | |
| srun: error: h18c40: tasks 232-269: Killed | |
| srun: error: h18c27: tasks 117-155: Killed | |
| srun: error: h18c23: tasks 0-38: Killed | |
| [38;21m2024-06-27 00:12:21,384 - INFO - root : BEGIN: wxflow.exceptions.__init__[0m | |
| [38;5;39m2024-06-27 00:12:21,386 - DEBUG - root : ( WorkflowException('An error occured during execution of srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gfs.t00z.aerovar.yaml'), 'An error occured during execution of srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gfs.t00z.aerovar.yaml' )[0m | |
| [38;5;196m2024-06-27 00:12:21,386 - ERROR - root : An error occured during execution of srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gfs.t00z.aerovar.yaml[0m | |
| [38;5;196m2024-06-27 00:12:21,386 - ERROR - root : An error occured during execution of srun -l --export=ALL -n 384 --cpus-per-task=1 /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gdas.x fv3jedi variational /scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gfs.t00z.aerovar.yaml[0m | |
| [38;21m2024-06-27 00:12:21,386 - INFO - root : END: wxflow.exceptions.__init__[0m | |
| [38;5;39m2024-06-27 00:12:21,386 - DEBUG - root : returning: None[0m | |
| Traceback (most recent call last): | |
| File "/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python/pygfs/task/aero_analysis.py", line 120, in execute | |
| exec_cmd() | |
| File "/scratch1/NCEPDEV/da/python/gdasapp/wxflow/20240307/src/wxflow/executable.py", line 230, in __call__ | |
| raise ProcessError(f"Command exited with status {proc.returncode}:", long_msg) | |
| wxflow.executable.ProcessError: Command exited with status 137: | |
| 'srun' '-l' '--export=ALL' '-n' '384' '--cpus-per-task=1' '/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gdas.x' 'fv3jedi' 'variational' '/scratch1/NCEPDEV/stmp2/Terry.McGuinness/RUNDIRS/C96_atmaerosnowDA_0661d4cd/gfsaeroanl_00/gfs.t00z.aerovar.yaml' | |
| During handling of the above exception, another exception occurred: | |
| Traceback (most recent call last): | |
| File "/scratch1/NCEPDEV/global/CI/2724/gfs/scripts/exglobal_aero_analysis_run.py", line 22, in <module> | |
| AeroAnl.execute() | |
| File "/scratch1/NCEPDEV/da/python/gdasapp/wxflow/20240307/src/wxflow/logger.py", line 266, in wrapper | |
| retval = func(*args, **kwargs) | |
| File "/scratch1/NCEPDEV/global/CI/2724/gfs/ush/python/pygfs/task/aero_analysis.py", line 124, in execute | |
| raise WorkflowException(f"An error occured during execution of {exec_cmd}") | |
| wxflow.exceptions.WorkflowException | |
| + JGLOBAL_AERO_ANALYSIS_RUN[1]: postamble JGLOBAL_AERO_ANALYSIS_RUN 1719447113 1 | |
| + preamble.sh[70]: set +x | |
| End JGLOBAL_AERO_ANALYSIS_RUN at 00:12:21 with error code 1 (time elapsed: 00:00:28) | |
| + aeroanlrun.sh[1]: postamble aeroanlrun.sh 1719447083 1 | |
| + preamble.sh[70]: set +x | |
| End aeroanlrun.sh at 00:12:21 with error code 1 (time elapsed: 00:00:58) | |
| _______________________________________________________________ | |
| Start Epilog on node h18c23 for job 62502286 :: Thu Jun 27 00:12:22 UTC 2024 | |
| Job 62502286 finished for user Terry.McGuinness in partition hera with exit code 1:0 | |
| _______________________________________________________________ | |
| End Epilogue Thu Jun 27 00:12:22 UTC 2024 |
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