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Created March 28, 2024 20:25
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error log file from CI run PR_2392
Raw
gfsatmanlupp.log
Begin upp.sh at Thu Mar 28 20:19:30 UTC 2024
+ upp.sh[16]: source /work2/noaa/stmp/CI/ORION/2392/gfs/ush/detect_machine.sh
++ detect_machine.sh[12]: [[ -n '' ]]
++ detect_machine.sh[15]: case $(hostname -f) in
+++ detect_machine.sh[15]: hostname -f
++ detect_machine.sh[47]: MACHINE_ID=UNKNOWN
++ detect_machine.sh[50]: [[ UNKNOWN == \U\N\K\N\O\W\N ]]
++ detect_machine.sh[51]: case ${PW_CSP:-} in
++ detect_machine.sh[53]: PW_CSP=UNKNOWN
++ detect_machine.sh[58]: MACHINE_ID=UNKNOWN
++ detect_machine.sh[61]: [[ UNKNOWN != \U\N\K\N\O\W\N ]]
++ detect_machine.sh[66]: [[ -d /lfs/h3 ]]
++ detect_machine.sh[69]: [[ -d /lfs/h1 ]]
++ detect_machine.sh[72]: [[ -d /mnt/lfs1 ]]
++ detect_machine.sh[75]: [[ -d /scratch1 ]]
++ detect_machine.sh[78]: [[ -d /work ]]
++ detect_machine.sh[80]: [[ -d /apps/other ]]
++ detect_machine.sh[84]: MACHINE_ID=orion
+ upp.sh[17]: [[ orion = \w\c\o\s\s\2 ]]
+ upp.sh[33]: . /work2/noaa/stmp/CI/ORION/2392/gfs/ush/load_fv3gfs_modules.sh
++ load_fv3gfs_modules.sh[4]: [[ NO == \N\O ]]
++ load_fv3gfs_modules.sh[5]: echo 'Loading modules quietly...'
Loading modules quietly...
++ load_fv3gfs_modules.sh[6]: set +x
Currently Loaded Modules:
1) intel/2022.1.2 40) grib-util/1.3.0
2) stack-intel/2022.0.2 41) g2tmpl/1.10.2
3) impi/2022.1.2 42) gsi-ncdiag/1.1.2
4) stack-intel-oneapi-mpi/2021.5.1 43) crtm-fix/2.4.0.1_emc
5) gettext/0.19.8.1 44) git-lfs/2.12.0
6) libxcrypt/4.4.35 45) crtm/2.4.0.1
7) zlib/1.2.13 46) openblas/0.3.24
8) sqlite/3.43.2 47) py-setuptools/63.4.3
9) util-linux-uuid/2.38.1 48) py-numpy/1.23.4
10) python/3.11.6 49) bufr/11.7.0
11) gempak/7.5.1 50) gmake/3.82
12) ncl/6.6.2 51) wgrib2/2.0.8
13) libjpeg/2.1.0 52) py-cftime/1.0.3.4
14) jasper/2.0.32 53) py-netcdf4/1.5.8
15) libpng/1.6.37 54) libyaml/0.2.5
16) openjpeg/2.3.1 55) py-pyyaml/6.0
17) eccodes/2.32.0 56) py-markupsafe/2.1.3
18) fftw/3.3.10 57) py-jinja2/3.1.2
19) nghttp2/1.57.0 58) py-bottleneck/1.3.7
20) curl/8.4.0 59) py-numexpr/2.8.4
21) proj/9.2.1 60) py-et-xmlfile/1.0.1
22) udunits/2.2.28 61) py-openpyxl/3.1.2
23) cdo/2.0.5 62) py-pytz/2023.3
24) snappy/1.1.10 63) py-pyxlsb/1.0.10
25) zstd/1.5.2 64) py-xlrd/2.0.1
26) c-blosc/1.21.5 65) py-xlsxwriter/3.1.7
27) pkg-config/0.27.1 66) py-xlwt/1.3.0
28) hdf5/1.14.0 67) py-pandas/1.5.3
29) netcdf-c/4.9.2 68) py-six/1.16.0
30) netcdf-fortran/4.6.1 69) py-python-dateutil/2.8.2
31) antlr/2.7.7 70) g2c/1.6.4
32) gsl/2.7.1 71) netcdf-cxx4/4.3.1
33) nco/5.0.6 72) met/9.1.3
34) bacio/2.4.1 73) metplus/3.1.1
35) w3emc/2.10.0 74) py-packaging/23.1
36) prod_util/2.1.1 75) py-xarray/2023.7.0
37) g2/3.4.5 76) prepobs/1.0.1
38) sp/2.5.0 77) fit2obs/1.0.0
39) ip/4.3.0 78) module_base.orion
+ upp.sh[34]: status=0
+ upp.sh[35]: (( status != 0 ))
+ upp.sh[40]: wxflowPATH=/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python:/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python/wxflow/src
+ upp.sh[41]: PYTHONPATH=/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-xarray-2023.7.0-morattm/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-packaging-23.1-dgs6ifc/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-python-dateutil-2.8.2-vlygpha/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-six-1.16.0-ddcohwa/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-pandas-1.5.3-qr3e2gl/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-xlwt-1.3.0-3qefc5n/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-xlsxwriter-3.1.7-fpgguhh/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-xlrd-2.0.1-6i77xp4/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-pyxlsb-1.0.10-akp2inc/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-pytz-2023.3-nwcdt6w/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-openpyxl-3.1.2-3idad2v/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-et-xmlfile-1.0.1-gag6gvs/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-numexpr-2.8.4-yfd6j6e/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-bottleneck-1.3.7-luuakjf/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-jinja2-3.1.2-zmrsjcw/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-markupsafe-2.1.3-l42gpni/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-pyyaml-6.0-qktn533/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-netcdf4-1.5.8-bwap5x4/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-cftime-1.0.3.4-bt3wx5s/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/bufr-11.7.0-xwqjwrm/lib64/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/bufr-11.7.0-xwqjwrm/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-numpy-1.23.4-pyxw6qc/lib/python3.11/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-setuptools-63.4.3-n46lzkl/lib/python3.11/site-packages:/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python:/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python/wxflow/src
+ upp.sh[42]: export PYTHONPATH
+ upp.sh[44]: export job=upp
+ upp.sh[44]: job=upp
+ upp.sh[45]: export jobid=upp.354457
+ upp.sh[45]: jobid=upp.354457
+ upp.sh[49]: IFS=_
+ upp.sh[49]: read -ra fhrs
+ upp.sh[52]: for fhr in '"${fhrs[@]}"'
+ upp.sh[53]: export FORECAST_HOUR=0
+ upp.sh[53]: FORECAST_HOUR=0
+ upp.sh[54]: /work2/noaa/stmp/CI/ORION/2392/gfs/jobs/JGLOBAL_ATMOS_UPP
Begin JGLOBAL_ATMOS_UPP at Thu Mar 28 20:19:34 UTC 2024
+ JGLOBAL_ATMOS_UPP[4]: source /work2/noaa/stmp/CI/ORION/2392/gfs/ush/jjob_header.sh -e upp -c 'base upp'
++ jjob_header.sh[44]: OPTIND=1
++ jjob_header.sh[45]: getopts c:e: option
++ jjob_header.sh[46]: case "${option}" in
++ jjob_header.sh[48]: env_job=upp
++ jjob_header.sh[45]: getopts c:e: option
++ jjob_header.sh[46]: case "${option}" in
++ jjob_header.sh[47]: read -ra configs
++ jjob_header.sh[45]: getopts c:e: option
++ jjob_header.sh[59]: shift 4
++ jjob_header.sh[61]: [[ -z upp ]]
++ jjob_header.sh[69]: export DATA=/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457
++ jjob_header.sh[69]: DATA=/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457
++ jjob_header.sh[70]: [[ YES == \Y\E\S ]]
++ jjob_header.sh[71]: rm -rf /work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457
++ jjob_header.sh[73]: mkdir -p /work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457
++ jjob_header.sh[74]: cd /work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457
++ jjob_header.sh[80]: export cycle=t00z
++ jjob_header.sh[80]: cycle=t00z
++ jjob_header.sh[81]: setpdy.sh
sed: can't read /work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/date/t00z: No such file or directory
completed cleanly
completed cleanly
Source PDY script to export PDYm7, ..., PDY, ..., PDYp7 variables.
++ jjob_header.sh[82]: source ./PDY
+++ PDY[1]: export PDYm7=20211214
+++ PDY[1]: PDYm7=20211214
+++ PDY[2]: export PDYm6=20211215
+++ PDY[2]: PDYm6=20211215
+++ PDY[3]: export PDYm5=20211216
+++ PDY[3]: PDYm5=20211216
+++ PDY[4]: export PDYm4=20211217
+++ PDY[4]: PDYm4=20211217
+++ PDY[5]: export PDYm3=20211218
+++ PDY[5]: PDYm3=20211218
+++ PDY[6]: export PDYm2=20211219
+++ PDY[6]: PDYm2=20211219
+++ PDY[7]: export PDYm1=20211220
+++ PDY[7]: PDYm1=20211220
+++ PDY[8]: export PDY=20211221
+++ PDY[8]: PDY=20211221
+++ PDY[9]: export PDYp1=20211222
+++ PDY[9]: PDYp1=20211222
+++ PDY[10]: export PDYp2=20211223
+++ PDY[10]: PDYp2=20211223
+++ PDY[11]: export PDYp3=20211224
+++ PDY[11]: PDYp3=20211224
+++ PDY[12]: export PDYp4=20211225
+++ PDY[12]: PDYp4=20211225
+++ PDY[13]: export PDYp5=20211226
+++ PDY[13]: PDYp5=20211226
+++ PDY[14]: export PDYp6=20211227
+++ PDY[14]: PDYp6=20211227
+++ PDY[15]: export PDYp7=20211228
+++ PDY[15]: PDYp7=20211228
++ jjob_header.sh[88]: export pid=354892
++ jjob_header.sh[88]: pid=354892
++ jjob_header.sh[89]: export pgmout=OUTPUT.354892
++ jjob_header.sh[89]: pgmout=OUTPUT.354892
++ jjob_header.sh[90]: export pgmerr=errfile
++ jjob_header.sh[90]: pgmerr=errfile
++ jjob_header.sh[96]: export EXPDIR=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/EXPDIR/C96C48_hybatmDA_3003f381
++ jjob_header.sh[96]: EXPDIR=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/EXPDIR/C96C48_hybatmDA_3003f381
++ jjob_header.sh[97]: for config in '"${configs[@]:-'\'''\''}"'
++ jjob_header.sh[98]: source /work2/noaa/stmp/CI/ORION/2392/RUNTESTS/EXPDIR/C96C48_hybatmDA_3003f381/config.base
+++ config.base[6]: echo 'BEGIN: config.base'
BEGIN: config.base
+++ config.base[9]: export machine=ORION
+++ config.base[9]: machine=ORION
+++ config.base[12]: export RUN_ENVIR=emc
+++ config.base[12]: RUN_ENVIR=emc
+++ config.base[15]: export ACCOUNT=nems
+++ config.base[15]: ACCOUNT=nems
+++ config.base[16]: export QUEUE=batch
+++ config.base[16]: QUEUE=batch
+++ config.base[17]: export QUEUE_SERVICE=batch
+++ config.base[17]: QUEUE_SERVICE=batch
+++ config.base[18]: export PARTITION_BATCH=orion
+++ config.base[18]: PARTITION_BATCH=orion
+++ config.base[19]: export PARTITION_SERVICE=service
+++ config.base[19]: PARTITION_SERVICE=service
+++ config.base[22]: export HPSS_PROJECT=emc-global
+++ config.base[22]: HPSS_PROJECT=emc-global
+++ config.base[25]: export HOMEgfs=/work2/noaa/stmp/CI/ORION/2392/gfs
+++ config.base[25]: HOMEgfs=/work2/noaa/stmp/CI/ORION/2392/gfs
+++ config.base[26]: export EXECgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/exec
+++ config.base[26]: EXECgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/exec
+++ config.base[27]: export FIXgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/fix
+++ config.base[27]: FIXgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/fix
+++ config.base[28]: export PARMgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/parm
+++ config.base[28]: PARMgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/parm
+++ config.base[29]: export SCRgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/scripts
+++ config.base[29]: SCRgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/scripts
+++ config.base[30]: export USHgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/ush
+++ config.base[30]: USHgfs=/work2/noaa/stmp/CI/ORION/2392/gfs/ush
+++ config.base[35]: export PACKAGEROOT=/work/noaa/global/glopara/nwpara
+++ config.base[35]: PACKAGEROOT=/work/noaa/global/glopara/nwpara
+++ config.base[36]: export COMROOT=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT
+++ config.base[36]: COMROOT=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT
+++ config.base[37]: export COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat
+++ config.base[37]: COMINsyn=/work/noaa/global/glopara/com/gfs/prod/syndat
+++ config.base[38]: export DMPDIR=/work/noaa/rstprod/dump
+++ config.base[38]: DMPDIR=/work/noaa/rstprod/dump
+++ config.base[39]: export BASE_CPLIC=/work/noaa/global/glopara/data/ICSDIR/prototype_ICs
+++ config.base[39]: BASE_CPLIC=/work/noaa/global/glopara/data/ICSDIR/prototype_ICs
+++ config.base[42]: export HOMEDIR=/work/noaa/global/mterry
+++ config.base[42]: HOMEDIR=/work/noaa/global/mterry
+++ config.base[43]: export STMP=/work/noaa/stmp/mterry
+++ config.base[43]: STMP=/work/noaa/stmp/mterry
+++ config.base[44]: export PTMP=/work/noaa/stmp/mterry
+++ config.base[44]: PTMP=/work/noaa/stmp/mterry
+++ config.base[45]: export NOSCRUB=/work/noaa/global/mterry
+++ config.base[45]: NOSCRUB=/work/noaa/global/mterry
+++ config.base[48]: export BASE_GIT=/work/noaa/global/glopara/git
+++ config.base[48]: BASE_GIT=/work/noaa/global/glopara/git
+++ config.base[51]: export DO_GOES=NO
+++ config.base[51]: DO_GOES=NO
+++ config.base[52]: export DO_BUFRSND=NO
+++ config.base[52]: DO_BUFRSND=NO
+++ config.base[53]: export DO_GEMPAK=NO
+++ config.base[53]: DO_GEMPAK=NO
+++ config.base[54]: export DO_AWIPS=NO
+++ config.base[54]: DO_AWIPS=NO
+++ config.base[55]: export DO_NPOESS=NO
+++ config.base[55]: DO_NPOESS=NO
+++ config.base[56]: export DO_TRACKER=YES
+++ config.base[56]: DO_TRACKER=YES
+++ config.base[57]: export DO_GENESIS=YES
+++ config.base[57]: DO_GENESIS=YES
+++ config.base[58]: export DO_GENESIS_FSU=NO
+++ config.base[58]: DO_GENESIS_FSU=NO
+++ config.base[59]: export DO_VERFOZN=YES
+++ config.base[59]: DO_VERFOZN=YES
+++ config.base[60]: export DO_VERFRAD=YES
+++ config.base[60]: DO_VERFRAD=YES
+++ config.base[61]: export DO_VMINMON=YES
+++ config.base[61]: DO_VMINMON=YES
+++ config.base[62]: export DO_MOS=NO
+++ config.base[62]: DO_MOS=NO
+++ config.base[68]: export REALTIME=YES
+++ config.base[68]: REALTIME=YES
+++ config.base[71]: export MODE=cycled
+++ config.base[71]: MODE=cycled
+++ config.base[80]: export HOMEpost=/work2/noaa/stmp/CI/ORION/2392/gfs
+++ config.base[80]: HOMEpost=/work2/noaa/stmp/CI/ORION/2392/gfs
+++ config.base[81]: export HOMEobsproc=/work/noaa/global/glopara/git/obsproc/v1.1.2
+++ config.base[81]: HOMEobsproc=/work/noaa/global/glopara/git/obsproc/v1.1.2
+++ config.base[84]: export 'NCP=/bin/cp -p'
+++ config.base[84]: NCP='/bin/cp -p'
+++ config.base[85]: export NMV=/bin/mv
+++ config.base[85]: NMV=/bin/mv
+++ config.base[86]: export 'NLN=/bin/ln -sf'
+++ config.base[86]: NLN='/bin/ln -sf'
+++ config.base[87]: export VERBOSE=YES
+++ config.base[87]: VERBOSE=YES
+++ config.base[88]: export KEEPDATA=NO
+++ config.base[88]: KEEPDATA=NO
+++ config.base[89]: export DEBUG_POSTSCRIPT=NO
+++ config.base[89]: DEBUG_POSTSCRIPT=NO
+++ config.base[90]: export CHGRP_RSTPROD=YES
+++ config.base[90]: CHGRP_RSTPROD=YES
+++ config.base[91]: export 'CHGRP_CMD=chgrp rstprod'
+++ config.base[91]: CHGRP_CMD='chgrp rstprod'
+++ config.base[92]: export NCDUMP=/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/ncdump
+++ config.base[92]: NCDUMP=/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/ncdump
+++ config.base[93]: export NCLEN=/work2/noaa/stmp/CI/ORION/2392/gfs/ush/getncdimlen
+++ config.base[93]: NCLEN=/work2/noaa/stmp/CI/ORION/2392/gfs/ush/getncdimlen
+++ config.base[96]: export BASE_ENV=/work2/noaa/stmp/CI/ORION/2392/gfs/env
+++ config.base[96]: BASE_ENV=/work2/noaa/stmp/CI/ORION/2392/gfs/env
+++ config.base[97]: export BASE_JOB=/work2/noaa/stmp/CI/ORION/2392/gfs/jobs/rocoto
+++ config.base[97]: BASE_JOB=/work2/noaa/stmp/CI/ORION/2392/gfs/jobs/rocoto
+++ config.base[100]: export SDATE=2021122018
+++ config.base[100]: SDATE=2021122018
+++ config.base[101]: export EDATE=2021122106
+++ config.base[101]: EDATE=2021122106
+++ config.base[102]: export EXP_WARM_START=.false.
+++ config.base[102]: EXP_WARM_START=.false.
+++ config.base[103]: export assim_freq=6
+++ config.base[103]: assim_freq=6
+++ config.base[104]: export PSLOT=C96C48_hybatmDA_3003f381
+++ config.base[104]: PSLOT=C96C48_hybatmDA_3003f381
+++ config.base[105]: export EXPDIR=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/EXPDIR/C96C48_hybatmDA_3003f381
+++ config.base[105]: EXPDIR=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/EXPDIR/C96C48_hybatmDA_3003f381
+++ config.base[106]: export ROTDIR=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381
+++ config.base[106]: ROTDIR=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381
+++ config.base[107]: export ROTDIR_DUMP=YES
+++ config.base[107]: ROTDIR_DUMP=YES
+++ config.base[108]: export DUMP_SUFFIX=
+++ config.base[108]: DUMP_SUFFIX=
+++ config.base[109]: [[ 2021122100 -ge 2019092100 ]]
+++ config.base[109]: [[ 2021122100 -le 2019110700 ]]
+++ config.base[112]: export DATAROOT=/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381
+++ config.base[112]: DATAROOT=/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381
+++ config.base[113]: export RUNDIR=/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381
+++ config.base[113]: RUNDIR=/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381
+++ config.base[114]: export ARCDIR=/work/noaa/global/mterry/archive/C96C48_hybatmDA_3003f381
+++ config.base[114]: ARCDIR=/work/noaa/global/mterry/archive/C96C48_hybatmDA_3003f381
+++ config.base[115]: export ATARDIR=/work/noaa/global/mterry/archive_rotdir/C96C48_hybatmDA_3003f381
+++ config.base[115]: ATARDIR=/work/noaa/global/mterry/archive_rotdir/C96C48_hybatmDA_3003f381
+++ config.base[118]: export envir=prod
+++ config.base[118]: envir=prod
+++ config.base[119]: export NET=gfs
+++ config.base[119]: NET=gfs
+++ config.base[120]: export RUN=gfs
+++ config.base[120]: RUN=gfs
+++ config.base[126]: source /work2/noaa/stmp/CI/ORION/2392/RUNTESTS/EXPDIR/C96C48_hybatmDA_3003f381/config.com
++++ config.com[4]: echo 'BEGIN: config.com'
BEGIN: config.com
++++ config.com[37]: [[ emc == \n\c\o ]]
++++ config.com[41]: COM_OBS_TMPL='${ROTDIR}/${RUN}.${YMD}/${HH}/obs'
++++ config.com[42]: COM_RTOFS_TMPL='${DMPDIR}'
++++ config.com[44]: declare -rx COM_OBS_TMPL COM_RTOFS_TMPL
++++ config.com[45]: declare -rx 'COM_OBSDMP_TMPL=${DMPDIR}/${DUMP}${DUMP_SUFFIX}.${YMD}/${HH}/atmos'
++++ config.com[47]: COM_BASE='${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}'
++++ config.com[49]: declare -rx 'COM_TOP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}'
++++ config.com[51]: declare -rx 'COM_CONF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/conf'
++++ config.com[52]: declare -rx 'COM_ATMOS_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/input'
++++ config.com[53]: declare -rx 'COM_ATMOS_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/restart'
++++ config.com[54]: declare -rx 'COM_ATMOS_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/atmos'
++++ config.com[55]: declare -rx 'COM_SNOW_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow'
++++ config.com[56]: declare -rx 'COM_ATMOS_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/history'
++++ config.com[57]: declare -rx 'COM_ATMOS_MASTER_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/master'
++++ config.com[58]: declare -rx 'COM_ATMOS_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2'
++++ config.com[59]: declare -rx 'COM_ATMOS_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2/${GRID}'
++++ config.com[60]: declare -rx 'COM_ATMOS_BUFR_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr'
++++ config.com[61]: declare -rx 'COM_ATMOS_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}'
++++ config.com[62]: declare -rx 'COM_ATMOS_GENESIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital'
++++ config.com[63]: declare -rx 'COM_ATMOS_TRACK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks'
++++ config.com[64]: declare -rx 'COM_ATMOS_GOES_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/goes_sim'
++++ config.com[65]: declare -rx 'COM_ATMOS_IMAGERY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/imagery'
++++ config.com[66]: declare -rx 'COM_ATMOS_OZNMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon'
++++ config.com[67]: declare -rx 'COM_ATMOS_RADMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/radmon'
++++ config.com[68]: declare -rx 'COM_ATMOS_MINMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/minmon'
++++ config.com[69]: declare -rx 'COM_ATMOS_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/wmo'
++++ config.com[71]: declare -rx 'COM_WAVE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/restart'
++++ config.com[72]: declare -rx 'COM_WAVE_PREP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/prep'
++++ config.com[73]: declare -rx 'COM_WAVE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/history'
++++ config.com[74]: declare -rx 'COM_WAVE_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gridded'
++++ config.com[75]: declare -rx 'COM_WAVE_STATION_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/station'
++++ config.com[76]: declare -rx 'COM_WAVE_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gempak'
++++ config.com[77]: declare -rx 'COM_WAVE_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/wmo'
++++ config.com[79]: declare -rx 'COM_OCEAN_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/history'
++++ config.com[80]: declare -rx 'COM_OCEAN_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/restart'
++++ config.com[81]: declare -rx 'COM_OCEAN_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/input'
++++ config.com[82]: declare -rx 'COM_OCEAN_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ocean'
++++ config.com[83]: declare -rx 'COM_OCEAN_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/netcdf'
++++ config.com[84]: declare -rx 'COM_OCEAN_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2'
++++ config.com[85]: declare -rx 'COM_OCEAN_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}'
++++ config.com[87]: declare -rx 'COM_ICE_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/input'
++++ config.com[88]: declare -rx 'COM_ICE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/history'
++++ config.com[89]: declare -rx 'COM_ICE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/restart'
++++ config.com[90]: declare -rx 'COM_ICE_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/netcdf'
++++ config.com[91]: declare -rx 'COM_ICE_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2'
++++ config.com[92]: declare -rx 'COM_ICE_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}'
++++ config.com[94]: declare -rx 'COM_CHEM_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/chem/history'
++++ config.com[95]: declare -rx 'COM_CHEM_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem'
++++ config.com[97]: declare -rx 'COM_MED_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/med/restart'
+++ config.base[129]: export 'ERRSCRIPT=eval [[ $err = 0 ]]'
+++ config.base[129]: ERRSCRIPT='eval [[ $err = 0 ]]'
+++ config.base[130]: export LOGSCRIPT=
+++ config.base[130]: LOGSCRIPT=
+++ config.base[133]: export 'REDOUT=1>'
+++ config.base[133]: REDOUT='1>'
+++ config.base[134]: export 'REDERR=2>'
+++ config.base[134]: REDERR='2>'
+++ config.base[136]: export SENDECF=NO
+++ config.base[136]: SENDECF=NO
+++ config.base[137]: export SENDSDM=NO
+++ config.base[137]: SENDSDM=NO
+++ config.base[138]: export SENDDBN_NTC=NO
+++ config.base[138]: SENDDBN_NTC=NO
+++ config.base[139]: export SENDDBN=NO
+++ config.base[139]: SENDDBN=NO
+++ config.base[140]: export DBNROOT=/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/prod-util-2.1.1-hevcp3q/fakedbn
+++ config.base[140]: DBNROOT=/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/prod-util-2.1.1-hevcp3q/fakedbn
+++ config.base[143]: export APP=ATM
+++ config.base[143]: APP=ATM
+++ config.base[146]: export DO_ATM=YES
+++ config.base[146]: DO_ATM=YES
+++ config.base[147]: export DO_COUPLED=NO
+++ config.base[147]: DO_COUPLED=NO
+++ config.base[148]: export DO_WAVE=NO
+++ config.base[148]: DO_WAVE=NO
+++ config.base[149]: export DO_OCN=NO
+++ config.base[149]: DO_OCN=NO
+++ config.base[150]: export DO_ICE=NO
+++ config.base[150]: DO_ICE=NO
+++ config.base[151]: export DO_AERO=NO
+++ config.base[151]: DO_AERO=NO
+++ config.base[152]: export WAVE_CDUMP=
+++ config.base[152]: WAVE_CDUMP=
+++ config.base[153]: export DOBNDPNT_WAVE=NO
+++ config.base[153]: DOBNDPNT_WAVE=NO
+++ config.base[154]: export FRAC_GRID=.true.
+++ config.base[154]: FRAC_GRID=.true.
+++ config.base[157]: export OPS_RES=C768
+++ config.base[157]: OPS_RES=C768
+++ config.base[160]: export LEVS=128
+++ config.base[160]: LEVS=128
+++ config.base[161]: export CASE=C96
+++ config.base[161]: CASE=C96
+++ config.base[162]: export CASE_ENS=C48
+++ config.base[162]: CASE_ENS=C48
+++ config.base[163]: export OCNRES=500
+++ config.base[163]: OCNRES=500
+++ config.base[164]: export ICERES=500
+++ config.base[164]: ICERES=500
+++ config.base[166]: case "${CASE}" in
+++ config.base[171]: export waveGRD=uglo_100km
+++ config.base[171]: waveGRD=uglo_100km
+++ config.base[185]: case "${APP}" in
+++ config.base[222]: [[ gfs =~ gdas ]]
+++ config.base[225]: [[ gfs =~ gfs ]]
+++ config.base[226]: export FHCYC=24
+++ config.base[226]: FHCYC=24
+++ config.base[230]: export FHMIN=0
+++ config.base[230]: FHMIN=0
+++ config.base[231]: export FHMAX=9
+++ config.base[231]: FHMAX=9
+++ config.base[232]: export FHOUT=3
+++ config.base[232]: FHOUT=3
+++ config.base[233]: export FHOUT_OCNICE=3
+++ config.base[233]: FHOUT_OCNICE=3
+++ config.base[236]: export EUPD_CYC=gdas
+++ config.base[236]: EUPD_CYC=gdas
+++ config.base[239]: export gfs_cyc=1
+++ config.base[239]: gfs_cyc=1
+++ config.base[242]: export FHMIN_GFS=0
+++ config.base[242]: FHMIN_GFS=0
+++ config.base[243]: export FHMAX_GFS=120
+++ config.base[243]: FHMAX_GFS=120
+++ config.base[244]: export FHOUT_GFS=3
+++ config.base[244]: FHOUT_GFS=3
+++ config.base[245]: export FHMAX_HF_GFS=0
+++ config.base[245]: FHMAX_HF_GFS=0
+++ config.base[246]: export FHOUT_HF_GFS=1
+++ config.base[246]: FHOUT_HF_GFS=1
+++ config.base[247]: export FHOUT_OCNICE_GFS=6
+++ config.base[247]: FHOUT_OCNICE_GFS=6
+++ config.base[248]: (( gfs_cyc != 0 ))
+++ config.base[249]: export STEP_GFS=24
+++ config.base[249]: STEP_GFS=24
+++ config.base[253]: export ILPOST=1
+++ config.base[253]: ILPOST=1
+++ config.base[256]: export restart_interval_gfs=12
+++ config.base[256]: restart_interval_gfs=12
+++ config.base[261]: export QUILTING=.true.
+++ config.base[261]: QUILTING=.true.
+++ config.base[262]: export OUTPUT_GRID=gaussian_grid
+++ config.base[262]: OUTPUT_GRID=gaussian_grid
+++ config.base[263]: export WRITE_DOPOST=.true.
+++ config.base[263]: WRITE_DOPOST=.true.
+++ config.base[264]: export WRITE_NSFLIP=.true.
+++ config.base[264]: WRITE_NSFLIP=.true.
+++ config.base[267]: export DOIAU=YES
+++ config.base[267]: DOIAU=YES
+++ config.base[268]: export IAUFHRS=3,6,9
+++ config.base[268]: IAUFHRS=3,6,9
+++ config.base[269]: export IAU_FHROT=3
+++ config.base[269]: IAU_FHROT=3
+++ config.base[270]: export IAU_DELTHRS=6
+++ config.base[270]: IAU_DELTHRS=6
+++ config.base[271]: export IAU_OFFSET=6
+++ config.base[271]: IAU_OFFSET=6
+++ config.base[272]: export DOIAU_ENKF=YES
+++ config.base[272]: DOIAU_ENKF=YES
+++ config.base[273]: export IAUFHRS_ENKF=3,6,9
+++ config.base[273]: IAUFHRS_ENKF=3,6,9
+++ config.base[274]: export IAU_DELTHRS_ENKF=6
+++ config.base[274]: IAU_DELTHRS_ENKF=6
+++ config.base[277]: export lobsdiag_forenkf=.true.
+++ config.base[277]: lobsdiag_forenkf=.true.
+++ config.base[285]: export imp_physics=8
+++ config.base[285]: imp_physics=8
+++ config.base[289]: export DO_JEDIATMVAR=NO
+++ config.base[289]: DO_JEDIATMVAR=NO
+++ config.base[290]: export DO_JEDIATMENS=NO
+++ config.base[290]: DO_JEDIATMENS=NO
+++ config.base[291]: export DO_JEDIOCNVAR=NO
+++ config.base[291]: DO_JEDIOCNVAR=NO
+++ config.base[292]: export DO_JEDISNOWDA=NO
+++ config.base[292]: DO_JEDISNOWDA=NO
+++ config.base[293]: export DO_MERGENSST=NO
+++ config.base[293]: DO_MERGENSST=NO
+++ config.base[296]: export DOHYBVAR=YES
+++ config.base[296]: DOHYBVAR=YES
+++ config.base[297]: export NMEM_ENS=2
+++ config.base[297]: NMEM_ENS=2
+++ config.base[298]: export SMOOTH_ENKF=NO
+++ config.base[298]: SMOOTH_ENKF=NO
+++ config.base[299]: export l4densvar=.true.
+++ config.base[299]: l4densvar=.true.
+++ config.base[300]: export lwrite4danl=.true.
+++ config.base[300]: lwrite4danl=.true.
+++ config.base[303]: export NMEM_ENS_GFS=30
+++ config.base[303]: NMEM_ENS_GFS=30
+++ config.base[304]: export NMEM_ENS_GFS_OFFSET=20
+++ config.base[304]: NMEM_ENS_GFS_OFFSET=20
+++ config.base[305]: export DO_CALC_INCREMENT_ENKF_GFS=NO
+++ config.base[305]: DO_CALC_INCREMENT_ENKF_GFS=NO
+++ config.base[308]: [[ YES = \Y\E\S ]]
+++ config.base[309]: export FHMIN_ENKF=3
+++ config.base[309]: FHMIN_ENKF=3
+++ config.base[310]: export FHMAX_ENKF=9
+++ config.base[310]: FHMAX_ENKF=9
+++ config.base[311]: export FHMAX_ENKF_GFS=12
+++ config.base[311]: FHMAX_ENKF_GFS=12
+++ config.base[312]: export FHOUT_ENKF_GFS=3
+++ config.base[312]: FHOUT_ENKF_GFS=3
+++ config.base[313]: [[ .true. = \.\t\r\u\e\. ]]
+++ config.base[314]: export FHOUT=1
+++ config.base[314]: FHOUT=1
+++ config.base[315]: export FHOUT_ENKF=1
+++ config.base[315]: FHOUT_ENKF=1
+++ config.base[322]: [[ YES == \N\O ]]
+++ config.base[330]: [[ cycled = \c\y\c\l\e\d ]]
+++ config.base[330]: [[ 2021122018 = \2\0\2\1\1\2\2\1\0\0 ]]
+++ config.base[330]: [[ YES = \N\O ]]
+++ config.base[330]: [[ cycled = \f\o\r\e\c\a\s\t\-\o\n\l\y ]]
+++ config.base[336]: [[ YES = \N\O ]]
+++ config.base[338]: export GSI_SOILANAL=NO
+++ config.base[338]: GSI_SOILANAL=NO
+++ config.base[341]: export DONST=YES
+++ config.base[341]: DONST=YES
+++ config.base[342]: [[ YES = \Y\E\S ]]
+++ config.base[342]: export 'FNTSFA= '
+++ config.base[342]: FNTSFA=' '
+++ config.base[345]: export nst_anl=.true.
+++ config.base[345]: nst_anl=.true.
+++ config.base[348]: export MAKE_NSSTBUFR=NO
+++ config.base[348]: MAKE_NSSTBUFR=NO
+++ config.base[351]: export MAKE_ACFTBUFR=NO
+++ config.base[351]: MAKE_ACFTBUFR=NO
+++ config.base[354]: export 'INCREMENTS_TO_ZERO='\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[354]: INCREMENTS_TO_ZERO=''\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[357]: export 'INCVARS_ZERO_STRAT='\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[357]: INCVARS_ZERO_STRAT=''\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[358]: export INCVARS_EFOLD=5
+++ config.base[358]: INCVARS_EFOLD=5
+++ config.base[363]: export netcdf_diag=.true.
+++ config.base[363]: netcdf_diag=.true.
+++ config.base[364]: export binary_diag=.false.
+++ config.base[364]: binary_diag=.false.
+++ config.base[367]: export DO_METP=YES
+++ config.base[367]: DO_METP=YES
+++ config.base[368]: export DO_FIT2OBS=YES
+++ config.base[368]: DO_FIT2OBS=YES
+++ config.base[369]: export DO_VRFY_OCEANDA=NO
+++ config.base[369]: DO_VRFY_OCEANDA=NO
+++ config.base[372]: export HPSSARCH=NO
+++ config.base[372]: HPSSARCH=NO
+++ config.base[373]: export LOCALARCH=NO
+++ config.base[373]: LOCALARCH=NO
+++ config.base[374]: [[ NO = \Y\E\S ]]
+++ config.base[378]: export ARCH_CYC=00
+++ config.base[378]: ARCH_CYC=00
+++ config.base[379]: export ARCH_WARMICFREQ=4
+++ config.base[379]: ARCH_WARMICFREQ=4
+++ config.base[380]: export ARCH_FCSTICFREQ=1
+++ config.base[380]: ARCH_FCSTICFREQ=1
+++ config.base[383]: export FITSARC=YES
+++ config.base[383]: FITSARC=YES
+++ config.base[384]: export FHMAX_FITS=132
+++ config.base[384]: FHMAX_FITS=132
+++ config.base[385]: [[ 132 -gt 120 ]]
+++ config.base[385]: export FHMAX_FITS=120
+++ config.base[385]: FHMAX_FITS=120
+++ config.base[388]: [[ NO = \Y\E\S ]]
+++ config.base[393]: [[ ORION = \H\E\R\A ]]
+++ config.base[397]: echo 'END: config.base'
END: config.base
++ jjob_header.sh[99]: status=0
++ jjob_header.sh[100]: (( status != 0 ))
++ jjob_header.sh[97]: for config in '"${configs[@]:-'\'''\''}"'
++ jjob_header.sh[98]: source /work2/noaa/stmp/CI/ORION/2392/RUNTESTS/EXPDIR/C96C48_hybatmDA_3003f381/config.upp
+++ config.upp[6]: echo 'BEGIN: config.upp'
BEGIN: config.upp
+++ config.upp[9]: . /work2/noaa/stmp/CI/ORION/2392/RUNTESTS/EXPDIR/C96C48_hybatmDA_3003f381/config.resources upp
++++ config.resources[7]: (( 1 != 1 ))
++++ config.resources[31]: step=upp
++++ config.resources[33]: echo 'BEGIN: config.resources'
BEGIN: config.resources
++++ config.resources[35]: case ${machine} in
++++ config.resources[38]: npe_node_max=40
++++ config.resources[71]: export npe_node_max
++++ config.resources[73]: case ${step} in
++++ config.resources[705]: case "${CASE}" in
++++ config.resources[707]: export npe_upp=96
++++ config.resources[707]: npe_upp=96
++++ config.resources[723]: export npe_node_upp=96
++++ config.resources[723]: npe_node_upp=96
++++ config.resources[725]: export nth_upp=1
++++ config.resources[725]: nth_upp=1
++++ config.resources[727]: export wtime_upp=00:15:00
++++ config.resources[727]: wtime_upp=00:15:00
++++ config.resources[728]: (( npe_node_upp > npe_node_max ))
++++ config.resources[729]: export npe_node_upp=40
++++ config.resources[729]: npe_node_upp=40
++++ config.resources[731]: export is_exclusive=True
++++ config.resources[731]: is_exclusive=True
++++ config.resources[1214]: echo 'END: config.resources'
END: config.resources
+++ config.upp[11]: export UPP_CONFIG=/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/upp.yaml
+++ config.upp[11]: UPP_CONFIG=/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/upp.yaml
+++ config.upp[14]: export NFHRS_PER_GROUP=3
+++ config.upp[14]: NFHRS_PER_GROUP=3
+++ config.upp[16]: echo 'END: config.upp'
END: config.upp
++ jjob_header.sh[99]: status=0
++ jjob_header.sh[100]: (( status != 0 ))
++ jjob_header.sh[110]: source /work2/noaa/stmp/CI/ORION/2392/gfs/env/ORION.env upp
+++ ORION.env[3]: [[ 1 -ne 1 ]]
+++ ORION.env[15]: step=upp
+++ ORION.env[17]: export 'launcher=srun -l --export=ALL'
+++ ORION.env[17]: launcher='srun -l --export=ALL'
+++ ORION.env[18]: export 'mpmd_opt=--multi-prog --output=mpmd.%j.%t.out'
+++ ORION.env[18]: mpmd_opt='--multi-prog --output=mpmd.%j.%t.out'
+++ ORION.env[21]: export MPI_BUFS_PER_PROC=2048
+++ ORION.env[21]: MPI_BUFS_PER_PROC=2048
+++ ORION.env[22]: export MPI_BUFS_PER_HOST=2048
+++ ORION.env[22]: MPI_BUFS_PER_HOST=2048
+++ ORION.env[23]: export MPI_GROUP_MAX=256
+++ ORION.env[23]: MPI_GROUP_MAX=256
+++ ORION.env[24]: export MPI_MEMMAP_OFF=1
+++ ORION.env[24]: MPI_MEMMAP_OFF=1
+++ ORION.env[25]: export MP_STDOUTMODE=ORDERED
+++ ORION.env[25]: MP_STDOUTMODE=ORDERED
+++ ORION.env[26]: export KMP_AFFINITY=scatter
+++ ORION.env[26]: KMP_AFFINITY=scatter
+++ ORION.env[27]: export OMP_STACKSIZE=2048000
+++ ORION.env[27]: OMP_STACKSIZE=2048000
+++ ORION.env[28]: export NTHSTACK=1024000000
+++ ORION.env[28]: NTHSTACK=1024000000
+++ ORION.env[31]: ulimit -s unlimited
+++ ORION.env[32]: ulimit -a
core file size (blocks, -c) 0
data seg size (kbytes, -d) unlimited
scheduling priority (-e) 0
file size (blocks, -f) unlimited
pending signals (-i) 767194
max locked memory (kbytes, -l) unlimited
max memory size (kbytes, -m) 192512000
open files (-n) 131072
pipe size (512 bytes, -p) 8
POSIX message queues (bytes, -q) 819200
real-time priority (-r) 0
stack size (kbytes, -s) unlimited
cpu time (seconds, -t) unlimited
max user processes (-u) 4096
virtual memory (kbytes, -v) unlimited
file locks (-x) unlimited
+++ ORION.env[34]: [[ upp = \p\r\e\p ]]
+++ ORION.env[34]: [[ upp = \p\r\e\p\b\u\f\r ]]
+++ ORION.env[43]: [[ upp = \p\r\e\p\s\n\o\w\o\b\s ]]
+++ ORION.env[47]: [[ upp = \w\a\v\e\i\n\i\t ]]
+++ ORION.env[47]: [[ upp = \w\a\v\e\p\r\e\p ]]
+++ ORION.env[47]: [[ upp = \w\a\v\e\p\o\s\t\s\b\s ]]
+++ ORION.env[48]: [[ upp = \w\a\v\e\p\o\s\t\b\n\d\p\n\t ]]
+++ ORION.env[48]: [[ upp = \w\a\v\e\p\o\s\t\p\n\t ]]
+++ ORION.env[48]: [[ upp == \w\a\v\e\p\o\s\t\b\n\d\p\n\t\b\l\l ]]
+++ ORION.env[55]: [[ upp = \a\t\m\a\n\l\r\u\n ]]
+++ ORION.env[63]: [[ upp = \a\t\m\e\n\s\a\n\l\r\u\n ]]
+++ ORION.env[71]: [[ upp = \a\e\r\o\a\n\l\r\u\n ]]
+++ ORION.env[81]: [[ upp = \s\n\o\w\a\n\l ]]
+++ ORION.env[91]: [[ upp = \o\c\n\a\n\a\l\b\m\a\t ]]
+++ ORION.env[101]: [[ upp = \o\c\n\a\n\a\l\r\u\n ]]
+++ ORION.env[111]: [[ upp = \o\c\n\a\n\a\l\c\h\k\p\t ]]
+++ ORION.env[121]: [[ upp = \o\c\n\a\n\a\l\e\c\e\n ]]
+++ ORION.env[129]: [[ upp = \a\n\a\l ]]
+++ ORION.env[129]: [[ upp = \a\n\a\l\c\a\l\c ]]
+++ ORION.env[157]: [[ upp = \s\f\c\a\n\l ]]
+++ ORION.env[165]: [[ upp = \e\o\b\s ]]
+++ ORION.env[180]: [[ upp = \e\u\p\d ]]
+++ ORION.env[192]: [[ upp = \f\c\s\t ]]
+++ ORION.env[192]: [[ upp = \e\f\c\s ]]
+++ ORION.env[208]: [[ upp = \u\p\p ]]
+++ ORION.env[210]: nth_max=1
+++ ORION.env[212]: export NTHREADS_UPP=1
+++ ORION.env[212]: NTHREADS_UPP=1
+++ ORION.env[213]: [[ 1 -gt 1 ]]
+++ ORION.env[214]: export 'APRUN_UPP=srun -l --export=ALL -n 96 --cpus-per-task=1'
+++ ORION.env[214]: APRUN_UPP='srun -l --export=ALL -n 96 --cpus-per-task=1'
++ jjob_header.sh[111]: status=0
++ jjob_header.sh[112]: (( status != 0 ))
+ JGLOBAL_ATMOS_UPP[15]: YMD=20211221
+ JGLOBAL_ATMOS_UPP[15]: HH=00
+ JGLOBAL_ATMOS_UPP[15]: generate_com -rx COM_ATMOS_ANALYSIS COM_ATMOS_HISTORY COM_ATMOS_MASTER
+ preamble.sh[143]: [[ NO == \N\O ]]
+ preamble.sh[143]: set +x
generate_com :: COM_ATMOS_ANALYSIS=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//analysis/atmos
generate_com :: COM_ATMOS_HISTORY=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/history
generate_com :: COM_ATMOS_MASTER=/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master
+ JGLOBAL_ATMOS_UPP[16]: [[ ! -d /work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master ]]
+ JGLOBAL_ATMOS_UPP[22]: /work2/noaa/stmp/CI/ORION/2392/gfs/scripts/exglobal_atmos_upp.py
2024-03-28 15:19:46,725 - INFO - root : BEGIN: __main__.main
2024-03-28 15:19:46,729 - DEBUG - root : ( )
2024-03-28 15:19:46,753 - INFO - upp : BEGIN: UPP.__init__
2024-03-28 15:19:46,753 - DEBUG - upp : ( <pygfs.task.upp.UPP object at 0x2ba173eb6990>, {'MPI_BUFS_PER_PROC': 2048, 'netcdf_diag': True, 'COM_CHEM_ANALYSIS_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem', 'envir': 'prod', 'PDYm6': datetime.datetime(2021, 12, 15, 0, 0), 'SLURM_JOB_START_TIME': 1711657169, 'SLURM_NODELIST': 'Orion-10-[33-35]', 'spack_env': 'gsi-addon-env', 'CPLUS_INCLUDE_PATH': '/apps/intel-2022.1.2/intel-2022.1.2/clck/2021.5.0/include', '__LMOD_REF_COUNT_DYLD_LIBRARY_PATH': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-xarray-2023.7.0-morattm/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-packaging-23.1-dgs6ifc/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-cxx4-4.3.1-shkbmwg/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/g2c-1.6.4-54s55vv/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-python-dateutil-2.8.2-vlygpha/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-six-1.16.0-ddcohwa/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-pandas-1.5.3-qr3e2gl/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-xlwt-1.3.0-3qefc5n/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-xlsxwriter-3.1.7-fpgguhh/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-xlrd-2.0.1-6i77xp4/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-pyxlsb-1.0.10-akp2inc/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-pytz-2023.3-nwcdt6w/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-openpyxl-3.1.2-3idad2v/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-et-xmlfile-1.0.1-gag6gvs/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-numexpr-2.8.4-yfd6j6e/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-bottleneck-1.3.7-luuakjf/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-jinja2-3.1.2-zmrsjcw/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-markupsafe-2.1.3-l42gpni/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-pyyaml-6.0-qktn533/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/libyaml-0.2.5-b6pwd2e/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-netcdf4-1.5.8-bwap5x4/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-cftime-1.0.3.4-bt3wx5s/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/wgrib2-2.0.8-dsagb5s/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/bufr-11.7.0-xwqjwrm/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/bufr-11.7.0-xwqjwrm/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-numpy-1.23.4-pyxw6qc/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-setuptools-63.4.3-n46lzkl/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/openblas-0.3.24-ij5v2x6/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-2.4.0.1-mn74hpa/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/gsi-ncdiag-1.1.2-taol63f/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/g2tmpl-1.10.2-psernkp/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ip-4.3.0-vgdjbdh/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/sp-2.5.0-7yfpzlm/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/g2-3.4.5-rhw6yw6/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/w3emc-2.10.0-kww7sdk/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/bacio-2.4.1-azlisvh/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/nco-5.0.6-y44gh2v/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/gsl-2.7.1-tkqwqeg/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/antlr-2.7.7-ncvqmdf/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/hdf5-1.14.0-4j7czjm/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/c-blosc-1.21.5-nzwcak7/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/zstd-1.5.2-jem4mro/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/snappy-1.1.10-2scx7yy/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/udunits-2.2.28-sr2calp/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/proj-9.2.1-3bw2fgd/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/curl-8.4.0-gwejaay/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/nghttp2-1.57.0-jb5d4dq/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/fftw-3.3.10-avaghpt/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/eccodes-2.32.0-unngztk/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/openjpeg-2.3.1-mqrbowe/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/libpng-1.6.37-fkqxqmp/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/libpng-1.6.37-fkqxqmp/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/jasper-2.0.32-ihvbl5g/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/libjpeg-turbo-2.1.0-fxqfz2d/lib64:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/python-3.11.6-vhdqx7b/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/util-linux-uuid-2.38.1-h3jsql3/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/sqlite-3.43.2-dyuoszy/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/zlib-1.2.13-753klof/lib:1;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/libxcrypt-4.4.35-nb5bvic/lib:1', 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'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', '_ModuleTable047_': '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', 'DO_JEDISNOWDA': False, 'COM_ATMOS_WMO_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/wmo', 'NLN': '/bin/ln -sf', 'COMINsyn': '/work/noaa/global/glopara/com/gfs/prod/syndat', 'LMOD_DIR': '/apps/lmod/lmod/libexec', '__LMOD_REF_COUNT_MANPATH': '/usr/share/man:7;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/nco-5.0.6-y44gh2v/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/gsl-2.7.1-tkqwqeg/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/zstd-1.5.2-jem4mro/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/proj-9.2.1-3bw2fgd/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/curl-8.4.0-gwejaay/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/nghttp2-1.57.0-jb5d4dq/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/fftw-3.3.10-avaghpt/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/libpng-1.6.37-fkqxqmp/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/jasper-2.0.32-ihvbl5g/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/libjpeg-turbo-2.1.0-fxqfz2d/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/python-3.11.6-vhdqx7b/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/util-linux-uuid-2.38.1-h3jsql3/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/sqlite-3.43.2-dyuoszy/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/zlib-1.2.13-753klof/share/man:2;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/libxcrypt-4.4.35-nb5bvic/share/man:2;/apps/intel-2022.1.2/intel-2022.1.2/mpi/2021.5.1/man:1;/apps/intel-2022.1.2/intel-2022.1.2/itac/2021.5.0/man:1;/apps/intel-2022.1.2/intel-2022.1.2/clck/2021.5.0/man:1;/apps/intel-2022.1.2/intel-2022.1.2/debugger/2021.5.0/documentation/man:1;/apps/intel-2022.1.2/intel-2022.1.2/compiler/2022.0.2/documentation/en/man/common:1;/apps/lmod/lmod/share/man:1;/apps/share/man:1;/apps/man:1;/opt/slurm/share/man:1', '_ModuleTable006_': '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', 'netcdf_fortran_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3', 'py_openpyxl_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-openpyxl-3.1.2-3idad2v', 'py_xlwt_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/py-xlwt-1.3.0-3qefc5n', 'COM_ATMOS_MASTER': '/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master', 'nst_anl': True, 'FHMAX_ENKF': 9, 'bufr_ver': '11.7.0', 'spack_mod_path': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/modulefiles/Core', 'HOMEcfs': '/work/noaa/global/glopara/git/Fit2Obs/v1.0.0', 'IP_LIB4': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ip-4.3.0-vgdjbdh/lib64/libip_4.a', 'MPIF90': 'mpiifort', 'W3EMC_LIBd': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/w3emc-2.10.0-kww7sdk/lib64/libw3emc_d.a', 'eccodes_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/eccodes-2.32.0-unngztk', 'APRUN_UPP': 'srun -l --export=ALL -n 96 --cpus-per-task=1', 'npe_node_upp': 40, 'ARCH_WARMICFREQ': 4, 'DO_MERGENSST': False, 'SCRgfs': '/work2/noaa/stmp/CI/ORION/2392/gfs/scripts', 'GEMERR': '/apps/gempak-7.5.1/gempak/error', 'HOMEprepobs': '/work/noaa/global/glopara/git/prepobs/feature-GFSv17_com_reorg_log_update', 'LMOD_FAMILY_MPI': 'impi', 'DO_JEDIOCNVAR': False, 'COM_ATMOS_GENESIS_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital', 'NCDUMP': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/ncdump', 'PARTITION_BATCH': 'orion', 'fit2obs_ver': '1.0.0', 'I_MPI_ROOT': '/apps/intel-2022.1.2/intel-2022.1.2/mpi/2021.5.1', 'MPICXX': 'mpiicpc', 'BASH_FUNC_module()': '() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)\n}', 'BASH_FUNC_generate_com()': '() { if [[ ${DEBUG_WORKFLOW:-"NO"} == "NO" ]]; then\n set +x;\n fi;\n local opts="-g";\n local OPTIND=1;\n while getopts "rx" option; do\n opts="${opts}${option}";\n done;\n shift $((OPTIND-1));\n for input in "$@";\n do\n IFS=\':\' read -ra args <<< "${input}";\n local com_var="${args[0]}";\n local template;\n local value;\n if (( ${#args[@]} > 1 )); then\n template="${args[1]}";\n else\n template="${com_var}_TMPL";\n fi;\n if [[ ! -v "${template}" ]]; then\n echo "FATAL ERROR in generate_com: Requested template ${template} not defined!";\n exit 2;\n fi;\n value=$(echo "${!template}" | envsubst);\n declare ${opts} "${com_var}"="${value}";\n echo "generate_com :: ${com_var}=${value}";\n done;\n set_trace\n}', 'BASH_FUNC_ml()': '() { eval $($LMOD_DIR/ml_cmd "$@")\n}', '_': '/work2/noaa/stmp/CI/ORION/2392/gfs/scripts/exglobal_atmos_upp.py'} )
2024-03-28 15:19:46,755 - DEBUG - task : Deleting runtime_key PDY from config
2024-03-28 15:19:46,755 - DEBUG - task : Deleting runtime_key cyc from config
2024-03-28 15:19:46,755 - DEBUG - task : Deleting runtime_key DATA from config
2024-03-28 15:19:46,755 - DEBUG - task : Deleting runtime_key RUN from config
2024-03-28 15:19:46,755 - DEBUG - task : Deleting runtime_key CDUMP from config
2024-03-28 15:19:46,759 - DEBUG - task : current cycle: 2021-12-21 00:00:00
2024-03-28 15:19:46,759 - DEBUG - task : previous cycle: 2021-12-20 18:00:00
2024-03-28 15:19:46,761 - INFO - upp : Read the UPP configuration yaml file /work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/upp.yaml
2024-03-28 15:19:46,830 - DEBUG - upp : upp_yaml:
{'analysis': {'config': {'rdaod': True},
'data_in': {'copy': [['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/postxconfig-NT-GFS-ANL.txt',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/postxconfig-NT.txt'],
['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//analysis/atmos/gfs.t00z.atmanl.nc',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/atm_20211221000000.nc'],
['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//analysis/atmos/gfs.t00z.sfcanl.nc',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/sfc_20211221000000.nc']]},
'data_out': {'copy': [['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00',
'/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2anl'],
['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00.idx',
'/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2ianl']]}},
'forecast': {'config': {'rdaod': True},
'data_in': {'copy': [['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/postxconfig-NT-GFS-F00-TWO.txt',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/postxconfig-NT.txt'],
['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf000.nc',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/atm_20211221000000.nc'],
['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/history/gfs.t00z.sfcf000.nc',
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'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'],
['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/AerosolCoeff.bin',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'],
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'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'],
['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/postxconfig-NT-GFS-GOES.txt',
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['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf000.nc',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/atm_20211221000000.nc'],
['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/history/gfs.t00z.sfcf000.nc',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/sfc_20211221000000.nc']]},
'data_out': {'copy': [['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00',
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['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00.idx',
'/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.goesmasterf000.grb2.idx']]}},
'upp': {'config': {'grib_version': 'grib2',
'ioform': 'netcdfpara',
'po': [1000.0,
975.0,
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7.0,
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2.0,
1.0,
0.7,
0.4,
0.2,
0.1,
0.07,
0.04,
0.02,
0.01],
'rdaod': False},
'fix_data': {'copy': [['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/g2tmpl-1.10.2-psernkp/share/params_grib2_tbl_new',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/params_grib2_tbl_new'],
['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/nam_micro_lookup.dat',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/eta_micro_lookup.dat'],
['/work2/noaa/stmp/CI/ORION/2392/gfs/exec/upp.x',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'],
['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/itag.jinja',
'/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/']],
'mkdir': ['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457']}}}
2024-03-28 15:19:46,831 - INFO - upp : END: UPP.__init__
2024-03-28 15:19:46,831 - DEBUG - upp : returning: None
2024-03-28 15:19:46,831 - INFO - upp : BEGIN: pygfs.task.upp.initialize
2024-03-28 15:19:46,831 - DEBUG - upp : ( {'upp': {'config': {'grib_version': 'grib2', 'ioform': 'netcdfpara', 'po': [1000.0, 975.0, 950.0, 925.0, 900.0, 875.0, 850.0, 825.0, 800.0, 775.0, 750.0, 725.0, 700.0, 675.0, 650.0, 625.0, 600.0, 575.0, 550.0, 525.0, 500.0, 475.0, 450.0, 425.0, 400.0, 375.0, 350.0, 325.0, 300.0, 275.0, 250.0, 225.0, 200.0, 175.0, 150.0, 125.0, 100.0, 70.0, 50.0, 40.0, 30.0, 20.0, 15.0, 10.0, 7.0, 5.0, 3.0, 2.0, 1.0, 0.7, 0.4, 0.2, 0.1, 0.07, 0.04, 0.02, 0.01], 'rdaod': False}, 'fix_data': {'mkdir': ['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457'], 'copy': [['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/g2tmpl-1.10.2-psernkp/share/params_grib2_tbl_new', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/params_grib2_tbl_new'], ['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/nam_micro_lookup.dat', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/eta_micro_lookup.dat'], ['/work2/noaa/stmp/CI/ORION/2392/gfs/exec/upp.x', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/itag.jinja', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/']]}}, 'analysis': {'config': {'rdaod': True}, 'data_in': {'copy': [['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/postxconfig-NT-GFS-ANL.txt', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/postxconfig-NT.txt'], ['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//analysis/atmos/gfs.t00z.atmanl.nc', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/atm_20211221000000.nc'], ['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//analysis/atmos/gfs.t00z.sfcanl.nc', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/sfc_20211221000000.nc']]}, 'data_out': {'copy': [['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00', '/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2anl'], ['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00.idx', '/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2ianl']]}}, 'forecast': {'config': {'rdaod': True}, 'data_in': {'copy': [['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/postxconfig-NT-GFS-F00-TWO.txt', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/postxconfig-NT.txt'], ['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf000.nc', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/atm_20211221000000.nc'], ['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/history/gfs.t00z.sfcf000.nc', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/sfc_20211221000000.nc']]}, 'data_out': {'copy': [['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00', '/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.masterf000.grb2'], ['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSFLX.GrbF00', '/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.sfluxf000.grb2'], ['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00.idx', '/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.masterf000.grb2.idx'], ['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSFLX.GrbF00.idx', '/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.sfluxf000.grb2.idx']]}}, 'goes': {'config': {'rdaod': False}, 'data_in': {'copy': [['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/amsre_aqua.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/amsre_aqua.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], 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['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmi_f15.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmi_f15.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f16.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f16.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f17.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f17.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f18.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f18.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f19.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f19.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f20.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ssmis_f20.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/tmi_trmm.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/tmi_trmm.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/abi_gr.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/abi_gr.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ahi_himawari8.TauCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/ahi_himawari8.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/v.seviri_m10.SpcCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/FASTEM4.MWwater.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/FASTEM5.MWwater.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/FASTEM6.MWwater.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/IGBP.IRland.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/IGBP.VISland.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/Nalli.IRwater.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/NPOESS.IRice.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/NPOESS.IRland.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/NPOESS.IRsnow.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/NPOESS.VISice.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/NPOESS.VISland.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/NPOESS.VISsnow.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/NPOESS.VISwater.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/USGS.IRland.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/USGS.VISland.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/WuSmith.IRwater.EmisCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/AerosolCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/crtm-fix-2.4.0.1_emc-ezbyzji/fix/CloudCoeff.bin', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/'], ['/work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/postxconfig-NT-GFS-GOES.txt', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/postxconfig-NT.txt'], ['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf000.nc', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/atm_20211221000000.nc'], ['/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/history/gfs.t00z.sfcf000.nc', '/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/sfc_20211221000000.nc']]}, 'data_out': {'copy': [['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00', '/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.goesmasterf000.grb2'], ['/work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/GFSPRS.GrbF00.idx', '/work2/noaa/stmp/CI/ORION/2392/RUNTESTS/COMROOT/C96C48_hybatmDA_3003f381/gfs.20211221/00//model_data/atmos/master/gfs.t00z.goesmasterf000.grb2.idx']]}}} )
2024-03-28 15:19:46,831 - INFO - upp : Copy static data to run directory
2024-03-28 15:19:46,832 - INFO - file_utils : Created /work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457
2024-03-28 15:19:46,840 - INFO - file_utils : Copied /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/g2tmpl-1.10.2-psernkp/share/params_grib2_tbl_new to /work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/params_grib2_tbl_new
2024-03-28 15:19:46,846 - INFO - file_utils : Copied /work2/noaa/stmp/CI/ORION/2392/gfs/parm/post/nam_micro_lookup.dat to /work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/eta_micro_lookup.dat
Traceback (most recent call last):
File "/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python/wxflow/fsutils.py", line 83, in cp
shutil.copy2(source, target)
File "/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/python-3.11.6-vhdqx7b/lib/python3.11/shutil.py", line 436, in copy2
copyfile(src, dst, follow_symlinks=follow_symlinks)
File "/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/gsi-addon-env/install/intel/2022.0.2/python-3.11.6-vhdqx7b/lib/python3.11/shutil.py", line 256, in copyfile
with open(src, 'rb') as fsrc:
^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/work2/noaa/stmp/CI/ORION/2392/gfs/exec/upp.x'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/work2/noaa/stmp/CI/ORION/2392/gfs/scripts/exglobal_atmos_upp.py", line 48, in <module>
main()
File "/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python/wxflow/logger.py", line 266, in wrapper
retval = func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/work2/noaa/stmp/CI/ORION/2392/gfs/scripts/exglobal_atmos_upp.py", line 35, in main
upp.initialize(upp_yaml)
File "/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python/wxflow/logger.py", line 266, in wrapper
retval = func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python/pygfs/task/upp.py", line 84, in initialize
FileHandler(upp_yaml.upp.fix_data).sync()
File "/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python/wxflow/file_utils.py", line 43, in sync
sync_factory[action](files)
File "/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python/wxflow/file_utils.py", line 63, in _copy_files
cp(src, dest)
File "/work2/noaa/stmp/CI/ORION/2392/gfs/ush/python/wxflow/fsutils.py", line 85, in cp
raise OSError(f"unable to copy {source} to {target}")
OSError: unable to copy /work2/noaa/stmp/CI/ORION/2392/gfs/exec/upp.x to /work/noaa/stmp/mterry/RUNDIRS/C96C48_hybatmDA_3003f381/upp.354457/upp.x
+ JGLOBAL_ATMOS_UPP[1]: postamble JGLOBAL_ATMOS_UPP 1711657174 1
+ preamble.sh[70]: set +x
End JGLOBAL_ATMOS_UPP at 20:19:47 with error code 1 (time elapsed: 00:00:13)
+ upp.sh[1]: postamble upp.sh 1711657170 1
+ preamble.sh[70]: set +x
End upp.sh at 20:19:47 with error code 1 (time elapsed: 00:00:17)
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