Created
April 25, 2024 19:27
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error log file from CI run PR_BUILD_2534
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+ OPTIND=1 | |
+ _opts='-f ' | |
+ getopts :j:dv option | |
+ case "${option}" in | |
+ BUILD_JOBS=8 | |
+ getopts :j:dv option | |
+ shift 2 | |
+ BUILD_JOBS=8 | |
+ WORKFLOW_BUILD=ON | |
+ ./gdas.cd/build.sh -f -f | |
Building GDASApp on orion | |
Currently Loaded Modules: | |
1) intel/2022.1.2 32) eckit/1.24.5 | |
2) stack-intel/2022.0.2 33) fftw/3.3.10 | |
3) impi/2022.1.2 34) fckit/0.11.0 | |
4) stack-intel-oneapi-mpi/2021.5.1 35) fiat/1.2.0 | |
5) cmake/3.23.1 36) ectrans/1.2.0 | |
6) nghttp2/1.57.0 37) qhull/2020.2 | |
7) curl/8.4.0 38) atlas/0.35.1 | |
8) zlib/1.2.13 39) sp/2.5.0 | |
9) git/2.28.0 40) gsl-lite/0.37.0 | |
10) pkg-config/0.27.1 41) libjpeg/2.1.0 | |
11) hdf5/1.14.0 42) krb5/1.15.1 | |
12) parallel-netcdf/1.12.2 43) libtirpc/1.3.3 | |
13) snappy/1.1.10 44) hdf/4.2.15 | |
14) zstd/1.5.2 45) jedi-cmake/1.4.0 | |
15) c-blosc/1.21.5 46) libpng/1.6.37 | |
16) netcdf-c/4.9.2 47) libxt/1.1.5 | |
17) nccmp/1.9.0.1 48) libxmu/1.1.4 | |
18) netcdf-fortran/4.6.1 49) libxpm/4.11.0 | |
19) antlr/2.7.7 50) libxaw/1.0.13 | |
20) gsl/2.7.1 51) udunits/2.2.28 | |
21) nco/5.0.6 52) ncview/2.1.9 | |
22) parallelio/2.5.10 53) netcdf-cxx4/4.3.1 | |
23) wget/1.21.3 54) py-pybind11/2.11.0 | |
24) boost/1.83.0 55) contrib/0.1 | |
25) bufr/12.0.1 56) noaatools/3.1 | |
26) git-lfs/2.12.0 57) rocoto/1.3.3 | |
27) ecbuild/3.7.2 58) hpc/1.2.0 | |
28) openjpeg/2.3.1 59) miniconda3/4.6.14 | |
29) eccodes/2.32.0 60) gdasapp/1.0.0 | |
30) eigen/3.4.0 61) GDAS/orion.intel | |
31) openblas/0.3.24 | |
Configuring ... | |
+ cmake -DMPIEXEC_EXECUTABLE=/opt/slurm/bin/srun -DMPIEXEC_NUMPROC_FLAG=-n -DBUILD_GSIBEC=ON -DCLONE_JCSDADATA=NO -DWORKFLOW_TESTS=ON /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/bundle | |
-- The C compiler identification is Intel 2021.5.0.20211109 | |
-- The CXX compiler identification is Intel 2021.5.0.20211109 | |
-- The Fortran compiler identification is Intel 2021.5.0.20211109 | |
-- Detecting C compiler ABI info | |
-- Detecting C compiler ABI info - done | |
-- Check for working C compiler: /apps/intel-2022.1.2/intel-2022.1.2/mpi/2021.5.1/bin/mpiicc - skipped | |
-- Detecting C compile features | |
-- Detecting C compile features - done | |
-- Detecting CXX compiler ABI info | |
-- Detecting CXX compiler ABI info - done | |
-- Check for working CXX compiler: /apps/intel-2022.1.2/intel-2022.1.2/mpi/2021.5.1/bin/mpiicpc - skipped | |
-- Detecting CXX compile features | |
-- Detecting CXX compile features - done | |
-- Detecting Fortran compiler ABI info | |
-- Detecting Fortran compiler ABI info - done | |
-- Check for working Fortran compiler: /apps/intel-2022.1.2/intel-2022.1.2/mpi/2021.5.1/bin/mpiifort - skipped | |
-- ecbuild 3.7.2 /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ecbuild-3.7.2-3n22kc3/share/ecbuild/cmake | |
-- cmake 3.23.1 /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/cmake-3.23.1-q6jmc7i/bin/cmake | |
-- --------------------------------------------------------- | |
-- Found Git: /apps/git-2.28.0/bin/git (found version "2.28.0") | |
-- Looking for sys/types.h | |
-- Looking for sys/types.h - found | |
-- Looking for stdint.h | |
-- Looking for stdint.h - found | |
-- Looking for stddef.h | |
-- Looking for stddef.h - found | |
-- Check size of void* | |
-- Check size of void* - done | |
-- Check size of off_t | |
-- Check size of off_t - done | |
-- --------------------------------------------------------- | |
-- --------------------------------------------------------- | |
-- [GDAS-bundle] (1.0.0) | |
-- Feature TESTS enabled | |
-- Found Python3: /work2/noaa/da/python/opt/core/miniconda3/4.6.14/envs/gdasapp/bin/python3.7 (found version "3.7.12") found components: Interpreter | |
-- Feature TESTS enabled | |
-- --------------------------------------------------------- | |
-- Adding bundle project jedicmake | |
-- --------------------------------------------------------- | |
-- Skipping bundle project eckit | |
-- --------------------------------------------------------- | |
-- Skipping bundle project fckit | |
-- --------------------------------------------------------- | |
-- Skipping bundle project atlas | |
-- --------------------------------------------------------- | |
-- Adding bundle project crtm | |
-- --------------------------------------------------------- | |
-- [crtm] (2.4.1) | |
-- Feature TESTS enabled | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF::NetCDF_Fortran [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so] | |
-- --------------------------------------------------------- | |
-- [CRTM_Tests] (1.0.1) | |
-- Feature TESTS enabled | |
-- download CRTM coeffs files from: https://bin.ssec.wisc.edu/pub/s4/CRTM/file to /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/test_data/crtm/2.4.1_skylab_4.0 | |
-- Hostname: Orion-login-1.HPC.MsState.Edu | |
-- Host FQDN: Orion-login-1.HPC.MsState.Edu | |
-- Git Branch (set CDASH_OVERRIDE_GIT_BRANCH to force): GIT_BRANCH_UNSPECIFIED | |
-- System ID: CentOS_7.6.1810 | |
-- Compilers: Intel_2021.5.0.20211109 | |
-- Build: GIT_BRANCH_UNSPECIFIED;CentOS_7.6.1810_conda;Intel_2021.5.0.20211109;RelWithDebInfo | |
-- Site: Orion-login-1.HPC.MsState.Edu | |
-- --------------------------------------------------------- | |
-- Adding bundle project gsibec | |
-- Found ecbuild: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ecbuild-3.7.2-3n22kc3/share/ecbuild/cmake (found suitable version "3.7.2", minimum required is "3.3.2") | |
-- --------------------------------------------------------- | |
-- [gsibec] (1.2.1) | |
-- Feature TESTS enabled | |
-- Found MKL: /apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_intel_lp64.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_sequential.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_core.so | |
-- Found MPI_Fortran: /apps/intel-2022.1.2/intel-2022.1.2/mpi/2021.5.1/bin/mpiifort (found version "3.1") | |
-- Found MPI: TRUE (found version "3.1") found components: Fortran | |
-- Found MPI_C: /apps/intel-2022.1.2/intel-2022.1.2/mpi/2021.5.1/bin/mpiicc (found version "3.1") | |
-- Found MPI_CXX: /apps/intel-2022.1.2/intel-2022.1.2/mpi/2021.5.1/bin/mpiicpc (found version "3.1") | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- Found sp: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/sp-2.5.0-7yfpzlm/lib64/libsp_4.a (found version "2.5.0") | |
-- --------------------------------------------------------- | |
-- Adding bundle project gsw | |
-- --------------------------------------------------------- | |
-- [gsw] (3.0.7) | |
-- Feature TESTS enabled | |
-- --------------------------------------------------------- | |
-- Adding bundle project oops | |
-- --------------------------------------------------------- | |
-- [oops] (1.10.0) | |
-- Feature TESTS enabled | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
-- Found MPI: TRUE (found version "3.1") found components: C CXX Fortran | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: C Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- Found Boost: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/boost-1.83.0-arn4fzz/lib/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.64.0") | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
-- Found addr2line at /bin/addr2line. | |
-- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line | |
-- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line - Failed | |
-- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_nognus | |
-- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_nognus - Failed | |
-- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_gnus | |
-- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_gnus - Failed | |
-- Performing Test OOPS_STACKTRACE_AVAILABLE_default | |
-- Performing Test OOPS_STACKTRACE_AVAILABLE_default - Success | |
-- Using this provider for stacktraces: default. | |
-- --------------------------------------------------------- | |
-- Adding bundle project vader | |
-- --------------------------------------------------------- | |
-- [vader] (1.6.0) | |
-- Feature TESTS enabled | |
-- VADER variables | |
-- - ENABLE_VADER_DOC: OFF | |
-- Found MPI: TRUE (found version "3.1") found components: C Fortran | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
-- Found MPI: TRUE (found version "3.1") found components: CXX Fortran | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: C Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- GSW FOUND; Including Marine Recipes gsw (3.0.7) | |
-- --------------------------------------------------------- | |
-- Adding bundle project saber | |
-- --------------------------------------------------------- | |
-- [saber] (1.9.0) | |
-- Feature TESTS enabled | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
-- Found MPI: TRUE (found version "3.1") found components: Fortran | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: C Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
-- Found Boost: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/boost-1.83.0-arn4fzz/lib/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") | |
-- Found PkgConfig: /bin/pkg-config (found version "0.27.1") | |
-- Found sp: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/sp-2.5.0-7yfpzlm/lib64/libsp_4.a (found version "2.5.0") | |
-- SABER block GSI is enabled | |
-- SABER block FastLAM spectral layer is enabled | |
-- SABER block SPECTRALB is enabled | |
-- SABER blocks based on VADER are enabled | |
-- SABER instrumentation is not enabled | |
-- Offline code coverage is not enabled | |
-- Setup QUENCH data links | |
-- SABER tests activated: | |
-- - TIER 1 base | |
-- - TIER 1 FastLAM-specific | |
-- - TIER 1 FastLAM-specific - FFTW | |
-- - TIER 1 GSI-GEOS-specific | |
-- - TIER 1 GSI-GFS-specific | |
-- - TIER 1 SPECTRALB-specific | |
-- - TIER 1 VADER-specific | |
-- Setup SABER directories and links | |
-- Tests parallel configuration: MPI: 1 / OMP: 1 | |
-- Tests parallel configuration: MPI: 2 / OMP: 1 | |
-- SABER documentation is not enabled | |
-- --------------------------------------------------------- | |
-- Adding bundle project ioda | |
-- --------------------------------------------------------- | |
-- [ioda] (2.9.0) | |
-- Feature TESTS enabled | |
-- Found OpenMP_C: -qopenmp (found version "5.0") | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: C CXX Fortran | |
-- Found HDF5: hdf5-shared (found version "1.14.0") found components: C HL | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
-- Found udunits: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/udunits-2.2.28-sr2calp/lib/libudunits2.so (Required is at least version "2.2.0") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- Found Boost: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/boost-1.83.0-arn4fzz/lib/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.64.0") | |
-- Found Python3: /work2/noaa/da/python/opt/core/miniconda3/4.6.14/envs/gdasapp/bin/python3.7 (found version "3.7.12") found components: Interpreter Development Development.Module Development.Embed | |
-- Performing Test HAS_INTEL_IPO | |
-- Performing Test HAS_INTEL_IPO - Success | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_abiclr.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_ahiclr.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aircraft.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aircraft_write.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_airs.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_altimeter.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_amsr.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_amsub.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aod.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aod_write.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_aod_write_testdatasets.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_atms.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_atms_write.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_atovs.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_atovs_write.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_cris.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_crisfsr.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_geocloud.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gmihigh.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gmihigh_write.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gmilow.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gnssro.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_gnssro_profile.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_groundgps.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_hirasfsr.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_hloswind.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_iasi.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_iasi_write.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_mwri.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_mwsfy3.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_oceancolour.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_oceansound.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_oceansound_truncate_profiles.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_satsst.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sattcwv.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_satwind.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_scatwind.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_seaice.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_seviriclr.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_history.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_mixed.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_time_displacement.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_truncate_profiles.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_write.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_sonde_write_mixed.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_ssmis.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_surface.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_surfacecloud.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//iodatest_odb_surfacesst.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//odb_default_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//odb_aircraft_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//odb_gnssro_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//odb_gnssro_profile_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//odb_oceansound_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//odb_radiance_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//odb_sonde_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//odb_surface_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//odb_surfacesst_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ioda/share/test/testinput//validation//ObsSpace.yaml | |
-- Use test data from ioda-data repository | |
-- --------------------------------------------------------- | |
-- Adding bundle project ufo | |
-- --------------------------------------------------------- | |
-- [ufo] (1.9.0) | |
-- Feature TESTS enabled | |
-- Found MPI: TRUE (found version "3.1") found components: C CXX Fortran | |
-- Found Boost: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/boost-1.83.0-arn4fzz/lib/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: C Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: C CXX Fortran | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
-- CRTM FOUND; Including CRTM Observation Operator (2.4.1) | |
-- RTTOV NOT FOUND; Excluding RTTOV Radiance Observation Operator | |
-- GSW FOUND; Including Marine Observation Operators (3.0.7) | |
-- ROPP NOT FOUND: Excluding GNSSRO Bending angle ROPP Operators | |
-- GEOS-AERO NOT FOUND: Excluding AOD operator from GEOS | |
-- OASIM NOT FOUND: Excluding Ocean Atmosphere Spectral Irradiance Model | |
-- Download test data from https://bin.ssec.wisc.edu/pub/s4/CRTM/file/crtm_coefficients_2.4.1_skylab_4.0.tar.gz | |
-- Use test data from ufo-data repository | |
-- Running ufo tests for tiers up to and including tier 1 | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/auxillary | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/auxillary/IASI_EmisEigenVec.dat | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/iasi_bmatrix_70_test.dat | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/gmihigh_bmatrix_70_test.dat | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/amsr_bmatrix_70_test.dat | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/ssmis_bmatrix_70_test.dat | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/atms_bmatrix_70_test.dat | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix/rttov/atovs_bmatrix_70_test.dat | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix/gnssro | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/bmatrix/gnssro/gnssro_bmatrix.txt | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/namemap | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/namemap/test_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/namemap/bayesian_name_map.yaml | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/ssmis_dmspf17_rmatrix_test.nc4 | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/atovs_metopb_rmatrix_test.nc4 | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/amsr_gcomw1_rmatrix_test.nc4 | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/iasi_metopb_rmatrix_test.nc4 | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/atms_noaa_20_rmatrix_test.nc4 | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/rttov/gmihigh_gpm_rmatrix_test.nc4 | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix_latitude.nl | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix_latitude.nc4 | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix.nl | |
-- Installing: /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix_avtemp.nl | |
-- --------------------------------------------------------- | |
-- Adding bundle project fms | |
-- --------------------------------------------------------- | |
-- [fms] (2020.4.0) | |
-- Feature TESTS enabled | |
-- Found MPI: TRUE (found version "3.1") found components: C Fortran | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: C Fortran | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- Looking for gettid | |
-- Looking for gettid - not found | |
-- --------------------------------------------------------- | |
-- Adding bundle project fv3 | |
-- --------------------------------------------------------- | |
-- [fv3] (1.2.0) | |
-- Feature TESTS enabled | |
-- Performing Test C_COMPILER_SUPPORTS_OMP | |
-- Performing Test C_COMPILER_SUPPORTS_OMP - Success | |
-- Performing Test CXX_COMPILER_SUPPORTS_OMP | |
-- Performing Test CXX_COMPILER_SUPPORTS_OMP - Success | |
-- Performing Test Fortran_COMPILER_SUPPORTS_OMP | |
-- Performing Test Fortran_COMPILER_SUPPORTS_OMP - Success | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- Found MPI: TRUE (found version "3.1") found components: CXX Fortran | |
-- --------------------------------------------------------- | |
-- Adding bundle project femps | |
CMake Warning (dev) at femps/CMakeLists.txt:7 (find_package): | |
Policy CMP0074 is not set: find_package uses <PackageName>_ROOT variables. | |
Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy | |
command to set the policy and suppress this warning. | |
Environment variable ecbuild_ROOT is set to: | |
/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ecbuild-3.7.2-3n22kc3 | |
For compatibility, CMake is ignoring the variable. | |
This warning is for project developers. Use -Wno-dev to suppress it. | |
-- Found ecbuild: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ecbuild-3.7.2-3n22kc3/share/ecbuild/cmake (found suitable version "3.7.2", minimum required is "3.6") | |
-- --------------------------------------------------------- | |
-- [femps] (1.3.0) | |
-- Feature TESTS enabled | |
-- Feature TESTS enabled | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- --------------------------------------------------------- | |
-- Adding bundle project fv3-jedi-lm | |
CMake Warning (dev) at fv3-jedi-lm/CMakeLists.txt:18 (find_package): | |
Policy CMP0074 is not set: find_package uses <PackageName>_ROOT variables. | |
Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy | |
command to set the policy and suppress this warning. | |
Environment variable ecbuild_ROOT is set to: | |
/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ecbuild-3.7.2-3n22kc3 | |
For compatibility, CMake is ignoring the variable. | |
This warning is for project developers. Use -Wno-dev to suppress it. | |
-- --------------------------------------------------------- | |
-- [fv3jedilm] (1.5.0) | |
-- Feature TESTS enabled | |
-- Found MPI: TRUE (found version "3.1") found components: Fortran | |
-- fv3jedilm FOUND MPI | |
-- Found package MPI required for feature MPI | |
-- Feature MPI enabled | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- --------------------------------------------------------- | |
-- Adding bundle project fv3-jedi | |
CMake Warning (dev) at fv3-jedi/CMakeLists.txt:20 (find_package): | |
Policy CMP0074 is not set: find_package uses <PackageName>_ROOT variables. | |
Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy | |
command to set the policy and suppress this warning. | |
Environment variable ecbuild_ROOT is set to: | |
/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ecbuild-3.7.2-3n22kc3 | |
For compatibility, CMake is ignoring the variable. | |
This warning is for project developers. Use -Wno-dev to suppress it. | |
-- --------------------------------------------------------- | |
-- [fv3jedi] (1.8.0) | |
-- Feature TESTS enabled | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: C Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- - NetCDF_Fortran_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/bin/nf-config] | |
-- - NetCDF::NetCDF_Fortran [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
-- Looking for Fortran sgemm | |
-- Looking for Fortran sgemm - not found | |
-- Looking for pthread.h | |
-- Looking for pthread.h - found | |
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
-- Found Threads: TRUE | |
-- Looking for Fortran sgemm | |
-- Looking for Fortran sgemm - found | |
-- Found BLAS: /apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_intel_lp64.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_intel_thread.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_core.so;/apps/intel-2022.1.2/intel-2022.1.2/compiler/2022.0.2/linux/compiler/lib/intel64_lin/libiomp5.so;-lm;-ldl | |
-- Looking for Fortran cheev | |
-- Looking for Fortran cheev - found | |
-- Found LAPACK: /apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_intel_lp64.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_intel_thread.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_core.so;/apps/intel-2022.1.2/intel-2022.1.2/compiler/2022.0.2/linux/compiler/lib/intel64_lin/libiomp5.so;-lm;-ldl;-lm;-ldl | |
-- Found sp: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/sp-2.5.0-7yfpzlm/lib64/libsp_4.a (found version "2.5.0") | |
-- FFTW targets: | |
-- FFTW::fftw3 (double precision) [/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_intel_lp64.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_sequential.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_core.so] | |
-- Found FFTW: /apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/include/fftw found components: double | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- FV3-SABER block GSI is enabled | |
-- Found sp: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/sp-2.5.0-7yfpzlm/lib64/libsp_4.a (found version "2.5.0") | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: C CXX Fortran | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
-- Found MPI: TRUE (found version "3.1") found components: CXX Fortran | |
-- Use crtm test data provided by ufo in /work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/bundle/test-data-release/crtm/2.4.1_skylab_4.0/ | |
-- Use test data from fv3-jedi-data repository | |
CMake Error: failed to create symbolic link '/work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/fv3-jedi/test/Data/inputs/gfs_c12/mem000': No such file or directory | |
-- Running fv3jedi tests for tiers up to and including tier 1 | |
-- --------------------------------------------------------- | |
-- Adding bundle project icepack | |
CMake Warning (dev) at icepack/CMakeLists.txt:14 (find_package): | |
Policy CMP0074 is not set: find_package uses <PackageName>_ROOT variables. | |
Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy | |
command to set the policy and suppress this warning. | |
Environment variable ecbuild_ROOT is set to: | |
/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ecbuild-3.7.2-3n22kc3 | |
For compatibility, CMake is ignoring the variable. | |
This warning is for project developers. Use -Wno-dev to suppress it. | |
-- Found ecbuild: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/ecbuild-3.7.2-3n22kc3/share/ecbuild/cmake (found suitable version "3.7.2", minimum required is "3.3.2") | |
-- --------------------------------------------------------- | |
-- [icepack] (1.2.0) | |
-- Feature TESTS enabled | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: C Fortran | |
-- Found MPI: TRUE (found version "3.1") found components: C Fortran | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF::NetCDF_Fortran [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so] | |
-- --------------------------------------------------------- | |
-- Adding bundle project mom6 | |
-- --------------------------------------------------------- | |
-- [mom6] (2022.1.0) | |
-- Feature TESTS enabled | |
-- FindNetCDF defines targets: | |
-- - NetCDF::NetCDF_Fortran [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so] | |
-- --------------------------------------------------------- | |
-- Adding bundle project soca | |
-- --------------------------------------------------------- | |
-- [soca] (1.7.0) | |
-- Feature TESTS enabled | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran C | |
-- FindNetCDF defines targets: | |
-- - NetCDF::NetCDF_Fortran [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so] | |
-- - NetCDF::NetCDF_C [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so] | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
-- Found MPI: TRUE (found version "3.1") found components: CXX Fortran | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
-- Found sp: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/sp-2.5.0-7yfpzlm/lib64/libsp_4.a (found version "2.5.0") | |
-- FFTW targets: | |
-- FFTW::fftw3 (double precision) [/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_intel_lp64.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_sequential.so;/apps/intel-2022.1.2/intel-2022.1.2/mkl/2022.0.2/lib/intel64/libmkl_core.so] | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: C CXX Fortran | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/include;/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") | |
-- FindNetCDF defines targets: | |
-- - NetCDF_VERSION [4.9.2] | |
-- - NetCDF_PARALLEL [TRUE] | |
-- - NetCDF_C_CONFIG_EXECUTABLE [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/bin/nc-config] | |
-- - NetCDF::NetCDF_C [SHARED] [Root: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n] Lib: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-c-4.9.2-4g3gg4n/lib/libnetcdf.so | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: Fortran | |
-- --------------------------------------------------------- | |
-- Adding bundle project gdas-utils | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-cxx4-4.3.1-shkbmwg/include (found version "4.9.2") found components: CXX | |
-- FindNetCDF defines targets: | |
-- - NetCDF::NetCDF_CXX [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-cxx4-4.3.1-shkbmwg/lib/libnetcdf_c++4.so] | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP_Fortran: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX Fortran | |
-- Found MPI: TRUE (found version "3.1") found components: CXX Fortran | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- Found OpenMP: TRUE (found version "5.0") found components: CXX | |
-- Found OpenMP_CXX: -qopenmp (found version "5.0") | |
-- --------------------------------------------------------- | |
-- Adding bundle project iodaconv | |
-- --------------------------------------------------------- | |
-- [iodaconv] (0.0.1) | |
-- Feature TESTS enabled | |
-- Skipping python tests that import pygrib | |
-- Found: eccodes | |
-- Found MPI: TRUE (found version "3.1") | |
-- Found bufr: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/bufr-12.0.1-4lkgdfe/lib64/libbufr_4.so (found version "12.0.1") | |
-- Found: bufr | |
-- Found: NetCDF::NetCDF_Fortran | |
-- Enabled Component: gnssro | |
-- Found: nceplib bufr | |
-- Found: eckit | |
-- Found: oops | |
-- Found: ioda | |
-- Found: bufr | |
-- Enabled Component: bufr | |
-- Found: eckit | |
-- Found: bufr | |
-- Found: pybind11 | |
-- Found: gsl-lite | |
-- Enabled Component: bufr python | |
-- Enabled Component: satbias converter | |
-- Enabled Component: obserror converter | |
-- Found: bufr | |
-- Found: NetCDF::NetCDF_Fortran | |
-- Enabled Component: pbfortran | |
-- --------------------------------------------------------- | |
-- Adding bundle project land-imsproc | |
-- --------------------------------------------------------- | |
-- [imsproc] (2022.10) | |
-- Feature TESTS enabled | |
-- Found OpenMP: TRUE (found version "5.0") found components: C Fortran | |
-- Found MPI: TRUE (found version "3.1") found components: C Fortran | |
-- Found NetCDF: /work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/include (found version "4.9.2") found components: Fortran | |
-- FindNetCDF defines targets: | |
-- - NetCDF::NetCDF_Fortran [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so] | |
-- --------------------------------------------------------- | |
-- Adding bundle project land-jediincr | |
-- --------------------------------------------------------- | |
-- [jediincr] (2022.10) | |
-- Feature TESTS enabled | |
-- FindNetCDF defines targets: | |
-- - NetCDF::NetCDF_Fortran [/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env/install/intel/2022.0.2/netcdf-fortran-4.6.1-hmzbka3/lib/libnetcdff.so] | |
-- --------------------------------------------------------- | |
-- Adding bundle project gdas | |
-- --------------------------------------------------------- | |
-- [GDASApp] (1.0.0) | |
-- Feature TESTS enabled | |
-- Found Python3: /work2/noaa/da/python/opt/core/miniconda3/4.6.14/envs/gdasapp/bin/python3.7 (found version "3.7.12") found components: Interpreter | |
CMake Error at gdas/test/CMakeLists.txt:9 (file): | |
file COPY cannot find | |
"/work2/noaa/da/cmartin/CI/GDASApp/data/test//gdasapp-fix-bda76f.tgz": | |
Permission denied. | |
CMake Error: Problem with archive_read_open_file(): Failed to open '/work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/gdas/test/gdasapp-fix-bda76f.tgz' | |
CMake Error at gdas/test/CMakeLists.txt:23 (file): | |
file failed to extract: | |
/work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/gdas/test/gdasapp-fix-bda76f.tgz | |
-- Configuring incomplete, errors occurred! | |
See also "/work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/CMakeFiles/CMakeOutput.log". | |
See also "/work2/noaa/stmp/CI/ORION/2534/gfs/sorc/gdas.cd/build/CMakeFiles/CMakeError.log". |
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