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emcbot/gfsatmos_prod_f009-f015.log

Created June 6, 2024 07:36
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error log file from CI run PR_2649
Raw
gfsatmos_prod_f009-f015.log
PBS: Running prologue on parent mom node: nid001391...
Job 134425898.cbqs01 nodelist: nid001391
+ /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/rocoto/atmos_products.sh
Begin atmos_products.sh at Thu Jun 6 07:30:30 UTC 2024
+ atmos_products.sh[11]: . /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/load_fv3gfs_modules.sh
++ load_fv3gfs_modules.sh[4]: [[ NO == \N\O ]]
++ load_fv3gfs_modules.sh[5]: echo 'Loading modules quietly...'
Loading modules quietly...
++ load_fv3gfs_modules.sh[6]: set +x
Resetting modules to system default. Reseting $MODULEPATH back to system default. All extra directories will be removed from $MODULEPATH.
Currently Loaded Modules:
1) craype-x86-rome (H) 13) perl/5.32.0 25) met/9.1.3
2) libfabric/1.11.0.0. (H) 14) libjpeg/9c 26) metplus/3.1.1
3) craype-network-ofi (H) 15) udunits/2.2.28 27) prepobs/1.0.1
4) envvar/1.0 16) gsl/2.7 28) fit2obs/1.0.0
5) PrgEnv-intel/8.1.0 17) cdo/1.9.8 29) mos_shared/2.7.2
6) craype/2.7.13 18) hdf5/1.10.6 30) module_base.wcoss2
7) intel/19.1.3.304 19) netcdf/4.7.4 31) grib_util/1.2.3
8) cray-mpich/8.1.9 20) nco/4.7.9 32) g2tmpl/1.10.2
9) cray-pals/1.0.17 21) prod_util/2.0.9 33) crtm/2.4.0.1
10) cfp/2.0.4 22) bufr_dump/1.0.0 34) wgrib2/2.0.8
11) python/3.8.6 23) util_shared/1.4.0
12) gempak/7.14.1 24) ncdiag/1.0.0
Where:
H: Hidden Module
+ atmos_products.sh[12]: status=0
+ atmos_products.sh[13]: (( status != 0 ))
+ atmos_products.sh[15]: export job=atmos_products
+ atmos_products.sh[15]: job=atmos_products
+ atmos_products.sh[16]: export jobid=atmos_products.26124
+ atmos_products.sh[16]: jobid=atmos_products.26124
basename: extra operand ‘ROOT/PR/2649/global-workflow/jobs/rocoto/atmos’
Try 'basename --help' for more information.
+ [20]: IFS=_
basename: extra operand ‘ROOT/PR/2649/global-workflow/jobs/rocoto/atmos’
Try 'basename --help' for more information.
+ [20]: read -ra fhrs
+ atmos_products.sh[24]: for fhr in "${fhrs[@]}"
+ atmos_products.sh[27]: fhr=10#009
+ atmos_products.sh[28]: fhr=10#009
+ atmos_products.sh[29]: export FORECAST_HOUR=9
+ atmos_products.sh[29]: FORECAST_HOUR=9
+ atmos_products.sh[30]: /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/JGLOBAL_ATMOS_PRODUCTS
Begin JGLOBAL_ATMOS_PRODUCTS at Thu Jun 6 07:30:32 UTC 2024
+ JGLOBAL_ATMOS_PRODUCTS[4]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/jjob_header.sh -e atmos_products -c 'base atmos_products'
++ jjob_header.sh[44]: OPTIND=1
++ jjob_header.sh[45]: getopts c:e: option
++ jjob_header.sh[46]: case "${option}" in
++ jjob_header.sh[48]: env_job=atmos_products
++ jjob_header.sh[45]: getopts c:e: option
++ jjob_header.sh[46]: case "${option}" in
++ jjob_header.sh[47]: read -ra configs
++ jjob_header.sh[45]: getopts c:e: option
++ jjob_header.sh[59]: shift 4
++ jjob_header.sh[61]: [[ -z atmos_products ]]
++ jjob_header.sh[69]: export DATA=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/atmos_products.26124
++ jjob_header.sh[69]: DATA=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/atmos_products.26124
++ jjob_header.sh[70]: [[ YES == \Y\E\S ]]
++ jjob_header.sh[71]: rm -rf /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/atmos_products.26124
++ jjob_header.sh[73]: mkdir -p /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/atmos_products.26124
++ jjob_header.sh[74]: cd /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/atmos_products.26124
++ jjob_header.sh[80]: export cycle=t00z
++ jjob_header.sh[80]: cycle=t00z
++ jjob_header.sh[81]: setpdy.sh
completed cleanly
completed cleanly
Source PDY script to export PDYm7, ..., PDY, ..., PDYp7 variables.
++ jjob_header.sh[82]: source ./PDY
+++ PDY[1]: export PDYm7=20211214
+++ PDY[1]: PDYm7=20211214
+++ PDY[2]: export PDYm6=20211215
+++ PDY[2]: PDYm6=20211215
+++ PDY[3]: export PDYm5=20211216
+++ PDY[3]: PDYm5=20211216
+++ PDY[4]: export PDYm4=20211217
+++ PDY[4]: PDYm4=20211217
+++ PDY[5]: export PDYm3=20211218
+++ PDY[5]: PDYm3=20211218
+++ PDY[6]: export PDYm2=20211219
+++ PDY[6]: PDYm2=20211219
+++ PDY[7]: export PDYm1=20211220
+++ PDY[7]: PDYm1=20211220
+++ PDY[8]: export PDY=20211221
+++ PDY[8]: PDY=20211221
+++ PDY[9]: export PDYp1=20211222
+++ PDY[9]: PDYp1=20211222
+++ PDY[10]: export PDYp2=20211223
+++ PDY[10]: PDYp2=20211223
+++ PDY[11]: export PDYp3=20211224
+++ PDY[11]: PDYp3=20211224
+++ PDY[12]: export PDYp4=20211225
+++ PDY[12]: PDYp4=20211225
+++ PDY[13]: export PDYp5=20211226
+++ PDY[13]: PDYp5=20211226
+++ PDY[14]: export PDYp6=20211227
+++ PDY[14]: PDYp6=20211227
+++ PDY[15]: export PDYp7=20211228
+++ PDY[15]: PDYp7=20211228
++ jjob_header.sh[88]: export pid=26569
++ jjob_header.sh[88]: pid=26569
++ jjob_header.sh[89]: export pgmout=OUTPUT.26569
++ jjob_header.sh[89]: pgmout=OUTPUT.26569
++ jjob_header.sh[90]: export pgmerr=errfile
++ jjob_header.sh[90]: pgmerr=errfile
++ jjob_header.sh[96]: export EXPDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28
++ jjob_header.sh[96]: EXPDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28
++ jjob_header.sh[97]: for config in "${configs[@]:-''}"
++ jjob_header.sh[98]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28/config.base
+++ config.base[6]: echo 'BEGIN: config.base'
BEGIN: config.base
+++ config.base[9]: export machine=WCOSS2
+++ config.base[9]: machine=WCOSS2
+++ config.base[12]: export RUN_ENVIR=emc
+++ config.base[12]: RUN_ENVIR=emc
+++ config.base[15]: export ACCOUNT=GFS-DEV
+++ config.base[15]: ACCOUNT=GFS-DEV
+++ config.base[16]: export ACCOUNT_SERVICE=GFS-DEV
+++ config.base[16]: ACCOUNT_SERVICE=GFS-DEV
+++ config.base[17]: export QUEUE=dev
+++ config.base[17]: QUEUE=dev
+++ config.base[18]: export QUEUE_SERVICE=dev_transfer
+++ config.base[18]: QUEUE_SERVICE=dev_transfer
+++ config.base[19]: export PARTITION_BATCH=
+++ config.base[19]: PARTITION_BATCH=
+++ config.base[20]: export PARTITION_SERVICE=
+++ config.base[20]: PARTITION_SERVICE=
+++ config.base[21]: export RESERVATION=
+++ config.base[21]: RESERVATION=
+++ config.base[24]: export HPSS_PROJECT=emc-global
+++ config.base[24]: HPSS_PROJECT=emc-global
+++ config.base[27]: export HOMEgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow
+++ config.base[27]: HOMEgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow
+++ config.base[28]: export EXECgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/exec
+++ config.base[28]: EXECgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/exec
+++ config.base[29]: export FIXgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix
+++ config.base[29]: FIXgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix
+++ config.base[30]: export PARMgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm
+++ config.base[30]: PARMgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm
+++ config.base[31]: export SCRgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts
+++ config.base[31]: SCRgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts
+++ config.base[32]: export USHgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush
+++ config.base[32]: USHgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush
+++ config.base[34]: export FIXam=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/am
+++ config.base[34]: FIXam=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/am
+++ config.base[35]: export FIXaer=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/aer
+++ config.base[35]: FIXaer=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/aer
+++ config.base[36]: export FIXcpl=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/cpl
+++ config.base[36]: FIXcpl=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/cpl
+++ config.base[37]: export FIXlut=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/lut
+++ config.base[37]: FIXlut=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/lut
+++ config.base[38]: export FIXorog=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/orog
+++ config.base[38]: FIXorog=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/orog
+++ config.base[39]: export FIXcice=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/cice
+++ config.base[39]: FIXcice=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/cice
+++ config.base[40]: export FIXmom=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/mom6
+++ config.base[40]: FIXmom=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/mom6
+++ config.base[41]: export FIXreg2grb2=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/reg2grb2
+++ config.base[41]: FIXreg2grb2=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/reg2grb2
+++ config.base[42]: export FIXugwd=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/ugwd
+++ config.base[42]: FIXugwd=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/ugwd
+++ config.base[43]: export FIXgdas=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/gdas
+++ config.base[43]: FIXgdas=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/gdas
+++ config.base[48]: export PACKAGEROOT=/lfs/h1/ops/prod/packages
+++ config.base[48]: PACKAGEROOT=/lfs/h1/ops/prod/packages
+++ config.base[49]: export COMROOT=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT
+++ config.base[49]: COMROOT=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT
+++ config.base[50]: export COMINsyn=/lfs/h1/ops/prod/com/gfs/v16.3/syndat
+++ config.base[50]: COMINsyn=/lfs/h1/ops/prod/com/gfs/v16.3/syndat
+++ config.base[51]: export DMPDIR=/lfs/h2/emc/dump/noscrub/dump
+++ config.base[51]: DMPDIR=/lfs/h2/emc/dump/noscrub/dump
+++ config.base[52]: export BASE_CPLIC=/lfs/h2/emc/global/noscrub/emc.global/data/ICSDIR/prototype_ICs
+++ config.base[52]: BASE_CPLIC=/lfs/h2/emc/global/noscrub/emc.global/data/ICSDIR/prototype_ICs
+++ config.base[56]: export COMINecmwf=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ecmwf
+++ config.base[56]: COMINecmwf=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ecmwf
+++ config.base[57]: export COMINnam=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/nam
+++ config.base[57]: COMINnam=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/nam
+++ config.base[58]: export COMINukmet=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ukmet
+++ config.base[58]: COMINukmet=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ukmet
+++ config.base[61]: export HOMEDIR=/lfs/h2/emc/global/noscrub/terry.mcguinness
+++ config.base[61]: HOMEDIR=/lfs/h2/emc/global/noscrub/terry.mcguinness
+++ config.base[62]: export STMP=/lfs/h2/emc/stmp/terry.mcguinness
+++ config.base[62]: STMP=/lfs/h2/emc/stmp/terry.mcguinness
+++ config.base[63]: export PTMP=/lfs/h2/emc/ptmp/terry.mcguinness
+++ config.base[63]: PTMP=/lfs/h2/emc/ptmp/terry.mcguinness
+++ config.base[64]: export NOSCRUB=/lfs/h2/emc/global/noscrub/terry.mcguinness
+++ config.base[64]: NOSCRUB=/lfs/h2/emc/global/noscrub/terry.mcguinness
+++ config.base[67]: export BASE_GIT=/lfs/h2/emc/global/save/emc.global/git
+++ config.base[67]: BASE_GIT=/lfs/h2/emc/global/save/emc.global/git
+++ config.base[70]: export DO_GOES=YES
+++ config.base[70]: DO_GOES=YES
+++ config.base[71]: export DO_BUFRSND=YES
+++ config.base[71]: DO_BUFRSND=YES
+++ config.base[72]: export DO_GEMPAK=YES
+++ config.base[72]: DO_GEMPAK=YES
+++ config.base[73]: export DO_AWIPS=NO
+++ config.base[73]: DO_AWIPS=NO
+++ config.base[74]: export DO_NPOESS=YES
+++ config.base[74]: DO_NPOESS=YES
+++ config.base[75]: export DO_TRACKER=YES
+++ config.base[75]: DO_TRACKER=YES
+++ config.base[76]: export DO_GENESIS=YES
+++ config.base[76]: DO_GENESIS=YES
+++ config.base[77]: export DO_GENESIS_FSU=NO
+++ config.base[77]: DO_GENESIS_FSU=NO
+++ config.base[78]: export DO_VERFOZN=YES
+++ config.base[78]: DO_VERFOZN=YES
+++ config.base[79]: export DO_VERFRAD=YES
+++ config.base[79]: DO_VERFRAD=YES
+++ config.base[80]: export DO_VMINMON=YES
+++ config.base[80]: DO_VMINMON=YES
+++ config.base[81]: export DO_MOS=NO
+++ config.base[81]: DO_MOS=NO
+++ config.base[87]: export REALTIME=YES
+++ config.base[87]: REALTIME=YES
+++ config.base[90]: export MODE=cycled
+++ config.base[90]: MODE=cycled
+++ config.base[99]: export FIXgsi=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/gsi
+++ config.base[99]: FIXgsi=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/gsi
+++ config.base[100]: export HOMEpost=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow
+++ config.base[100]: HOMEpost=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow
+++ config.base[101]: export HOMEobsproc=/lfs/h2/emc/global/save/emc.global/git/obsproc/v1.1.2
+++ config.base[101]: HOMEobsproc=/lfs/h2/emc/global/save/emc.global/git/obsproc/v1.1.2
+++ config.base[104]: export 'NCP=/bin/cp -p'
+++ config.base[104]: NCP='/bin/cp -p'
+++ config.base[105]: export NMV=/bin/mv
+++ config.base[105]: NMV=/bin/mv
+++ config.base[106]: export 'NLN=/bin/ln -sf'
+++ config.base[106]: NLN='/bin/ln -sf'
+++ config.base[107]: export VERBOSE=YES
+++ config.base[107]: VERBOSE=YES
+++ config.base[108]: export KEEPDATA=NO
+++ config.base[108]: KEEPDATA=NO
+++ config.base[109]: export DEBUG_POSTSCRIPT=NO
+++ config.base[109]: DEBUG_POSTSCRIPT=NO
+++ config.base[110]: export CHGRP_RSTPROD=YES
+++ config.base[110]: CHGRP_RSTPROD=YES
+++ config.base[111]: export 'CHGRP_CMD=chgrp rstprod'
+++ config.base[111]: CHGRP_CMD='chgrp rstprod'
+++ config.base[112]: export NCDUMP=/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/netcdf/4.7.4/bin/ncdump
+++ config.base[112]: NCDUMP=/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/netcdf/4.7.4/bin/ncdump
+++ config.base[113]: export NCLEN=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/getncdimlen
+++ config.base[113]: NCLEN=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/getncdimlen
+++ config.base[116]: export BASE_ENV=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/env
+++ config.base[116]: BASE_ENV=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/env
+++ config.base[117]: export BASE_JOB=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/rocoto
+++ config.base[117]: BASE_JOB=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/rocoto
+++ config.base[120]: export SDATE=2021122018
+++ config.base[120]: SDATE=2021122018
+++ config.base[121]: export EDATE=2021122118
+++ config.base[121]: EDATE=2021122118
+++ config.base[122]: export EXP_WARM_START=.false.
+++ config.base[122]: EXP_WARM_START=.false.
+++ config.base[123]: export assim_freq=6
+++ config.base[123]: assim_freq=6
+++ config.base[124]: export PSLOT=C96_atm3DVar_extended_9b290b28
+++ config.base[124]: PSLOT=C96_atm3DVar_extended_9b290b28
+++ config.base[125]: export EXPDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28
+++ config.base[125]: EXPDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28
+++ config.base[126]: export ROTDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28
+++ config.base[126]: ROTDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28
+++ config.base[127]: export ROTDIR_DUMP=YES
+++ config.base[127]: ROTDIR_DUMP=YES
+++ config.base[128]: export DUMP_SUFFIX=
+++ config.base[128]: DUMP_SUFFIX=
+++ config.base[129]: [[ 2021122100 -ge 2019092100 ]]
+++ config.base[129]: [[ 2021122100 -le 2019110700 ]]
+++ config.base[132]: export DATAROOT=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28
+++ config.base[132]: DATAROOT=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28
+++ config.base[133]: export RUNDIR=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28
+++ config.base[133]: RUNDIR=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28
+++ config.base[134]: export ARCDIR=/lfs/h2/emc/global/noscrub/terry.mcguinness/archive/C96_atm3DVar_extended_9b290b28
+++ config.base[134]: ARCDIR=/lfs/h2/emc/global/noscrub/terry.mcguinness/archive/C96_atm3DVar_extended_9b290b28
+++ config.base[135]: export ATARDIR=/NCEPDEV/emc-global/1year/terry.mcguinness/WCOSS2/scratch/C96_atm3DVar_extended_9b290b28
+++ config.base[135]: ATARDIR=/NCEPDEV/emc-global/1year/terry.mcguinness/WCOSS2/scratch/C96_atm3DVar_extended_9b290b28
+++ config.base[138]: export envir=prod
+++ config.base[138]: envir=prod
+++ config.base[139]: export NET=gfs
+++ config.base[139]: NET=gfs
+++ config.base[140]: export RUN=gfs
+++ config.base[140]: RUN=gfs
+++ config.base[146]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28/config.com
++++ config.com[4]: echo 'BEGIN: config.com'
BEGIN: config.com
++++ config.com[37]: [[ emc == \n\c\o ]]
++++ config.com[41]: COM_OBS_TMPL='${ROTDIR}/${RUN}.${YMD}/${HH}/obs'
++++ config.com[42]: COM_RTOFS_TMPL='${DMPDIR}'
++++ config.com[44]: declare -rx COM_OBS_TMPL COM_RTOFS_TMPL
++++ config.com[45]: declare -rx 'COM_OBSDMP_TMPL=${DMPDIR}/${DUMP}${DUMP_SUFFIX}.${YMD}/${HH}/atmos'
++++ config.com[47]: COM_BASE='${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}'
++++ config.com[49]: declare -rx 'COM_TOP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}'
++++ config.com[51]: declare -rx 'COM_CONF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/conf'
++++ config.com[52]: declare -rx 'COM_ATMOS_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/input'
++++ config.com[53]: declare -rx 'COM_ATMOS_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/restart'
++++ config.com[54]: declare -rx 'COM_ATMOS_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/atmos'
++++ config.com[55]: declare -rx 'COM_SNOW_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow'
++++ config.com[56]: declare -rx 'COM_ATMOS_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/history'
++++ config.com[57]: declare -rx 'COM_ATMOS_MASTER_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/master'
++++ config.com[58]: declare -rx 'COM_ATMOS_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2'
++++ config.com[59]: declare -rx 'COM_ATMOS_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2/${GRID}'
++++ config.com[60]: declare -rx 'COM_ATMOS_BUFR_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr'
++++ config.com[61]: declare -rx 'COM_ATMOS_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}'
++++ config.com[62]: declare -rx 'COM_ATMOS_GENESIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital'
++++ config.com[63]: declare -rx 'COM_ATMOS_TRACK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks'
++++ config.com[64]: declare -rx 'COM_ATMOS_GOES_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/goes_sim'
++++ config.com[65]: declare -rx 'COM_ATMOS_IMAGERY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/imagery'
++++ config.com[66]: declare -rx 'COM_ATMOS_OZNMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon'
++++ config.com[67]: declare -rx 'COM_ATMOS_RADMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/radmon'
++++ config.com[68]: declare -rx 'COM_ATMOS_MINMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/minmon'
++++ config.com[69]: declare -rx 'COM_ATMOS_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/wmo'
++++ config.com[71]: declare -rx 'COM_WAVE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/restart'
++++ config.com[72]: declare -rx 'COM_WAVE_PREP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/prep'
++++ config.com[73]: declare -rx 'COM_WAVE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/history'
++++ config.com[74]: declare -rx 'COM_WAVE_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gridded'
++++ config.com[75]: declare -rx 'COM_WAVE_STATION_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/station'
++++ config.com[76]: declare -rx 'COM_WAVE_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gempak'
++++ config.com[77]: declare -rx 'COM_WAVE_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/wmo'
++++ config.com[79]: declare -rx 'COM_OCEAN_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/history'
++++ config.com[80]: declare -rx 'COM_OCEAN_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/restart'
++++ config.com[81]: declare -rx 'COM_OCEAN_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/input'
++++ config.com[82]: declare -rx 'COM_OCEAN_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ocean'
++++ config.com[83]: declare -rx 'COM_OCEAN_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/netcdf'
++++ config.com[84]: declare -rx 'COM_OCEAN_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2'
++++ config.com[85]: declare -rx 'COM_OCEAN_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}'
++++ config.com[87]: declare -rx 'COM_ICE_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ice'
++++ config.com[88]: declare -rx 'COM_ICE_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/input'
++++ config.com[89]: declare -rx 'COM_ICE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/history'
++++ config.com[90]: declare -rx 'COM_ICE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/restart'
++++ config.com[91]: declare -rx 'COM_ICE_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/netcdf'
++++ config.com[92]: declare -rx 'COM_ICE_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2'
++++ config.com[93]: declare -rx 'COM_ICE_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}'
++++ config.com[95]: declare -rx 'COM_CHEM_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/chem/history'
++++ config.com[96]: declare -rx 'COM_CHEM_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem'
++++ config.com[98]: declare -rx 'COM_MED_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/med/restart'
+++ config.base[149]: export 'ERRSCRIPT=eval [[ $err = 0 ]]'
+++ config.base[149]: ERRSCRIPT='eval [[ $err = 0 ]]'
+++ config.base[150]: export LOGSCRIPT=
+++ config.base[150]: LOGSCRIPT=
+++ config.base[153]: export 'REDOUT=1>'
+++ config.base[153]: REDOUT='1>'
+++ config.base[154]: export 'REDERR=2>'
+++ config.base[154]: REDERR='2>'
+++ config.base[156]: export SENDECF=NO
+++ config.base[156]: SENDECF=NO
+++ config.base[157]: export SENDSDM=NO
+++ config.base[157]: SENDSDM=NO
+++ config.base[158]: export SENDDBN_NTC=NO
+++ config.base[158]: SENDDBN_NTC=NO
+++ config.base[159]: export SENDDBN=NO
+++ config.base[159]: SENDDBN=NO
+++ config.base[160]: export DBNROOT=/apps/ops/prod/nco/core/prod_util.v2.0.9/fakedbn
+++ config.base[160]: DBNROOT=/apps/ops/prod/nco/core/prod_util.v2.0.9/fakedbn
+++ config.base[163]: export APP=ATM
+++ config.base[163]: APP=ATM
+++ config.base[165]: shopt -s extglob
+++ config.base[167]: case "${RUN}" in
+++ config.base[174]: shopt -u extglob
+++ config.base[177]: export DO_ATM=YES
+++ config.base[177]: DO_ATM=YES
+++ config.base[178]: export DO_COUPLED=NO
+++ config.base[178]: DO_COUPLED=NO
+++ config.base[179]: export DO_WAVE=NO
+++ config.base[179]: DO_WAVE=NO
+++ config.base[180]: export DO_OCN=NO
+++ config.base[180]: DO_OCN=NO
+++ config.base[181]: export DO_ICE=NO
+++ config.base[181]: DO_ICE=NO
+++ config.base[182]: export DO_AERO=NO
+++ config.base[182]: DO_AERO=NO
+++ config.base[183]: export AERO_FCST_CDUMP=
+++ config.base[183]: AERO_FCST_CDUMP=
+++ config.base[184]: export AERO_ANL_CDUMP=
+++ config.base[184]: AERO_ANL_CDUMP=
+++ config.base[185]: export WAVE_CDUMP=
+++ config.base[185]: WAVE_CDUMP=
+++ config.base[186]: export DOBNDPNT_WAVE=NO
+++ config.base[186]: DOBNDPNT_WAVE=NO
+++ config.base[187]: export DOIBP_WAV=NO
+++ config.base[187]: DOIBP_WAV=NO
+++ config.base[188]: export FRAC_GRID=.true.
+++ config.base[188]: FRAC_GRID=.true.
+++ config.base[189]: export DO_NEST=NO
+++ config.base[189]: DO_NEST=NO
+++ config.base[190]: [[ NO == \Y\E\S ]]
+++ config.base[194]: export ntiles=6
+++ config.base[194]: ntiles=6
+++ config.base[198]: export OPS_RES=C768
+++ config.base[198]: OPS_RES=C768
+++ config.base[201]: export LEVS=128
+++ config.base[201]: LEVS=128
+++ config.base[202]: export CASE=C96
+++ config.base[202]: CASE=C96
+++ config.base[203]: export CASE_ENS=@CASEENS@
+++ config.base[203]: CASE_ENS=@CASEENS@
+++ config.base[204]: export OCNRES=500
+++ config.base[204]: OCNRES=500
+++ config.base[205]: export ICERES=500
+++ config.base[205]: ICERES=500
+++ config.base[208]: case "${CASE}" in
+++ config.base[213]: export waveGRD=uglo_100km
+++ config.base[213]: waveGRD=uglo_100km
+++ config.base[227]: case "${APP}" in
+++ config.base[268]: [[ gfs =~ gdas ]]
+++ config.base[271]: [[ gfs =~ gfs ]]
+++ config.base[272]: export FHCYC=24
+++ config.base[272]: FHCYC=24
+++ config.base[276]: export FHMIN=0
+++ config.base[276]: FHMIN=0
+++ config.base[277]: export FHMAX=9
+++ config.base[277]: FHMAX=9
+++ config.base[278]: export FHOUT=3
+++ config.base[278]: FHOUT=3
+++ config.base[279]: export FHOUT_OCNICE=3
+++ config.base[279]: FHOUT_OCNICE=3
+++ config.base[282]: export EUPD_CYC=gdas
+++ config.base[282]: EUPD_CYC=gdas
+++ config.base[285]: export gfs_cyc=4
+++ config.base[285]: gfs_cyc=4
+++ config.base[288]: export FHMIN_GFS=0
+++ config.base[288]: FHMIN_GFS=0
+++ config.base[289]: export FHMAX_GFS=384
+++ config.base[289]: FHMAX_GFS=384
+++ config.base[290]: export FHOUT_GFS=3
+++ config.base[290]: FHOUT_GFS=3
+++ config.base[291]: export FHMAX_HF_GFS=0
+++ config.base[291]: FHMAX_HF_GFS=0
+++ config.base[292]: export FHOUT_HF_GFS=1
+++ config.base[292]: FHOUT_HF_GFS=1
+++ config.base[293]: export FHOUT_OCNICE_GFS=6
+++ config.base[293]: FHOUT_OCNICE_GFS=6
+++ config.base[294]: export FHMIN_WAV=0
+++ config.base[294]: FHMIN_WAV=0
+++ config.base[295]: export FHOUT_WAV=3
+++ config.base[295]: FHOUT_WAV=3
+++ config.base[296]: export FHMAX_HF_WAV=120
+++ config.base[296]: FHMAX_HF_WAV=120
+++ config.base[297]: export FHOUT_HF_WAV=1
+++ config.base[297]: FHOUT_HF_WAV=1
+++ config.base[298]: export FHMAX_WAV=9
+++ config.base[298]: FHMAX_WAV=9
+++ config.base[299]: export FHMAX_WAV_GFS=384
+++ config.base[299]: FHMAX_WAV_GFS=384
+++ config.base[300]: (( gfs_cyc != 0 ))
+++ config.base[301]: export STEP_GFS=6
+++ config.base[301]: STEP_GFS=6
+++ config.base[306]: export ILPOST=1
+++ config.base[306]: ILPOST=1
+++ config.base[307]: (( FHMAX_HF_GFS < 120 ))
+++ config.base[308]: export ILPOST=3
+++ config.base[308]: ILPOST=3
+++ config.base[312]: export restart_interval_gfs=12
+++ config.base[312]: restart_interval_gfs=12
+++ config.base[317]: export QUILTING=.true.
+++ config.base[317]: QUILTING=.true.
+++ config.base[318]: export OUTPUT_GRID=gaussian_grid
+++ config.base[318]: OUTPUT_GRID=gaussian_grid
+++ config.base[319]: export WRITE_DOPOST=.true.
+++ config.base[319]: WRITE_DOPOST=.true.
+++ config.base[320]: export WRITE_NSFLIP=.true.
+++ config.base[320]: WRITE_NSFLIP=.true.
+++ config.base[323]: export DOIAU=YES
+++ config.base[323]: DOIAU=YES
+++ config.base[324]: export IAUFHRS=3,6,9
+++ config.base[324]: IAUFHRS=3,6,9
+++ config.base[325]: export IAU_FHROT=3
+++ config.base[325]: IAU_FHROT=3
+++ config.base[326]: export IAU_DELTHRS=6
+++ config.base[326]: IAU_DELTHRS=6
+++ config.base[327]: export IAU_OFFSET=6
+++ config.base[327]: IAU_OFFSET=6
+++ config.base[328]: export DOIAU_ENKF=YES
+++ config.base[328]: DOIAU_ENKF=YES
+++ config.base[329]: export IAUFHRS_ENKF=3,6,9
+++ config.base[329]: IAUFHRS_ENKF=3,6,9
+++ config.base[330]: export IAU_DELTHRS_ENKF=6
+++ config.base[330]: IAU_DELTHRS_ENKF=6
+++ config.base[333]: export lobsdiag_forenkf=.true.
+++ config.base[333]: lobsdiag_forenkf=.true.
+++ config.base[341]: export imp_physics=8
+++ config.base[341]: imp_physics=8
+++ config.base[345]: export DO_JEDIATMVAR=NO
+++ config.base[345]: DO_JEDIATMVAR=NO
+++ config.base[346]: export DO_JEDIATMENS=NO
+++ config.base[346]: DO_JEDIATMENS=NO
+++ config.base[347]: export DO_JEDIOCNVAR=NO
+++ config.base[347]: DO_JEDIOCNVAR=NO
+++ config.base[348]: export DO_JEDISNOWDA=NO
+++ config.base[348]: DO_JEDISNOWDA=NO
+++ config.base[349]: export DO_MERGENSST=NO
+++ config.base[349]: DO_MERGENSST=NO
+++ config.base[352]: export DOHYBVAR=NO
+++ config.base[352]: DOHYBVAR=NO
+++ config.base[353]: export NMEM_ENS=0
+++ config.base[353]: NMEM_ENS=0
+++ config.base[354]: export SMOOTH_ENKF=NO
+++ config.base[354]: SMOOTH_ENKF=NO
+++ config.base[355]: export l4densvar=.true.
+++ config.base[355]: l4densvar=.true.
+++ config.base[356]: export lwrite4danl=.true.
+++ config.base[356]: lwrite4danl=.true.
+++ config.base[357]: export DO_CALC_INCREMENT=NO
+++ config.base[357]: DO_CALC_INCREMENT=NO
+++ config.base[360]: export NMEM_ENS_GFS=30
+++ config.base[360]: NMEM_ENS_GFS=30
+++ config.base[361]: export NMEM_ENS_GFS_OFFSET=20
+++ config.base[361]: NMEM_ENS_GFS_OFFSET=20
+++ config.base[362]: export DO_CALC_INCREMENT_ENKF_GFS=NO
+++ config.base[362]: DO_CALC_INCREMENT_ENKF_GFS=NO
+++ config.base[365]: [[ NO = \Y\E\S ]]
+++ config.base[379]: [[ NO == \N\O ]]
+++ config.base[379]: [[ YES == \Y\E\S ]]
+++ config.base[380]: export IAUFHRS=6
+++ config.base[380]: IAUFHRS=6
+++ config.base[381]: export IAU_FHROT=3
+++ config.base[381]: IAU_FHROT=3
+++ config.base[382]: export IAU_FILTER_INCREMENTS=.true.
+++ config.base[382]: IAU_FILTER_INCREMENTS=.true.
+++ config.base[383]: export IAUFHRS_ENKF=6
+++ config.base[383]: IAUFHRS_ENKF=6
+++ config.base[387]: export ENKF_SPREAD=YES
+++ config.base[387]: ENKF_SPREAD=YES
+++ config.base[390]: [[ cycled = \c\y\c\l\e\d ]]
+++ config.base[390]: [[ 2021122018 = \2\0\2\1\1\2\2\1\0\0 ]]
+++ config.base[390]: [[ YES = \N\O ]]
+++ config.base[390]: [[ cycled = \f\o\r\e\c\a\s\t\-\o\n\l\y ]]
+++ config.base[396]: [[ YES = \N\O ]]
+++ config.base[400]: [[ YES == \Y\E\S ]]
+++ config.base[401]: export restart_interval_enkfgdas=3
+++ config.base[401]: restart_interval_enkfgdas=3
+++ config.base[406]: export restart_interval_enkfgfs=3
+++ config.base[406]: restart_interval_enkfgfs=3
+++ config.base[408]: [[ YES == \Y\E\S ]]
+++ config.base[409]: export restart_interval_gdas=3
+++ config.base[409]: restart_interval_gdas=3
+++ config.base[414]: export GSI_SOILANAL=NO
+++ config.base[414]: GSI_SOILANAL=NO
+++ config.base[417]: export DONST=YES
+++ config.base[417]: DONST=YES
+++ config.base[418]: [[ YES = \Y\E\S ]]
+++ config.base[418]: export 'FNTSFA= '
+++ config.base[418]: FNTSFA=' '
+++ config.base[421]: export nst_anl=.true.
+++ config.base[421]: nst_anl=.true.
+++ config.base[424]: export MAKE_NSSTBUFR=NO
+++ config.base[424]: MAKE_NSSTBUFR=NO
+++ config.base[427]: export MAKE_ACFTBUFR=NO
+++ config.base[427]: MAKE_ACFTBUFR=NO
+++ config.base[430]: export 'INCREMENTS_TO_ZERO='\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[430]: INCREMENTS_TO_ZERO=''\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[433]: export 'INCVARS_ZERO_STRAT='\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[433]: INCVARS_ZERO_STRAT=''\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[434]: export INCVARS_EFOLD=5
+++ config.base[434]: INCVARS_EFOLD=5
+++ config.base[439]: export netcdf_diag=.true.
+++ config.base[439]: netcdf_diag=.true.
+++ config.base[440]: export binary_diag=.false.
+++ config.base[440]: binary_diag=.false.
+++ config.base[443]: export DO_METP=NO
+++ config.base[443]: DO_METP=NO
+++ config.base[444]: export DO_FIT2OBS=YES
+++ config.base[444]: DO_FIT2OBS=YES
+++ config.base[445]: export DO_VRFY_OCEANDA=NO
+++ config.base[445]: DO_VRFY_OCEANDA=NO
+++ config.base[448]: export FHMAX_FITS=132
+++ config.base[448]: FHMAX_FITS=132
+++ config.base[449]: [[ 132 -gt 384 ]]
+++ config.base[452]: export HPSSARCH=NO
+++ config.base[452]: HPSSARCH=NO
+++ config.base[453]: export LOCALARCH=NO
+++ config.base[453]: LOCALARCH=NO
+++ config.base[454]: [[ NO = \Y\E\S ]]
+++ config.base[458]: export ARCH_CYC=00
+++ config.base[458]: ARCH_CYC=00
+++ config.base[459]: export ARCH_WARMICFREQ=4
+++ config.base[459]: ARCH_WARMICFREQ=4
+++ config.base[460]: export ARCH_FCSTICFREQ=1
+++ config.base[460]: ARCH_FCSTICFREQ=1
+++ config.base[463]: [[ NO = \Y\E\S ]]
+++ config.base[470]: export NUM_SND_COLLECTIVES=9
+++ config.base[470]: NUM_SND_COLLECTIVES=9
+++ config.base[472]: echo 'END: config.base'
END: config.base
++ jjob_header.sh[99]: status=0
++ jjob_header.sh[100]: (( status != 0 ))
++ jjob_header.sh[97]: for config in "${configs[@]:-''}"
++ jjob_header.sh[98]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28/config.atmos_products
+++ config.atmos_products[6]: echo 'BEGIN: config.atmos_products'
BEGIN: config.atmos_products
+++ config.atmos_products[9]: . /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28/config.resources atmos_products
++++ config.resources[7]: (( 1 != 1 ))
++++ config.resources[31]: step=atmos_products
++++ config.resources[33]: echo 'BEGIN: config.resources'
BEGIN: config.resources
++++ config.resources[35]: case ${machine} in
++++ config.resources[36]: npe_node_max=128
++++ config.resources[72]: export npe_node_max
++++ config.resources[74]: case ${step} in
++++ config.resources[807]: export wtime_atmos_products=00:15:00
++++ config.resources[807]: wtime_atmos_products=00:15:00
++++ config.resources[808]: export npe_atmos_products=24
++++ config.resources[808]: npe_atmos_products=24
++++ config.resources[809]: export nth_atmos_products=1
++++ config.resources[809]: nth_atmos_products=1
++++ config.resources[810]: export npe_node_atmos_products=24
++++ config.resources[810]: npe_node_atmos_products=24
++++ config.resources[811]: export wtime_atmos_products_gfs=00:15:00
++++ config.resources[811]: wtime_atmos_products_gfs=00:15:00
++++ config.resources[812]: export npe_atmos_products_gfs=24
++++ config.resources[812]: npe_atmos_products_gfs=24
++++ config.resources[813]: export nth_atmos_products_gfs=1
++++ config.resources[813]: nth_atmos_products_gfs=1
++++ config.resources[814]: export npe_node_atmos_products_gfs=24
++++ config.resources[814]: npe_node_atmos_products_gfs=24
++++ config.resources[815]: export is_exclusive=True
++++ config.resources[815]: is_exclusive=True
++++ config.resources[1300]: echo 'END: config.resources'
END: config.resources
+++ config.atmos_products[12]: export NFHRS_PER_GROUP=3
+++ config.atmos_products[12]: NFHRS_PER_GROUP=3
+++ config.atmos_products[15]: export INTERP_ATMOS_MASTERSH=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/interp_atmos_master.sh
+++ config.atmos_products[15]: INTERP_ATMOS_MASTERSH=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/interp_atmos_master.sh
+++ config.atmos_products[16]: export INTERP_ATMOS_SFLUXSH=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/interp_atmos_sflux.sh
+++ config.atmos_products[16]: INTERP_ATMOS_SFLUXSH=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/interp_atmos_sflux.sh
+++ config.atmos_products[18]: [[ gfs == \g\d\a\s ]]
+++ config.atmos_products[24]: [[ gfs == \g\f\s ]]
+++ config.atmos_products[25]: export downset=2
+++ config.atmos_products[25]: downset=2
+++ config.atmos_products[26]: export FHOUT_PGBS=3
+++ config.atmos_products[26]: FHOUT_PGBS=3
+++ config.atmos_products[27]: export FLXGF=YES
+++ config.atmos_products[27]: FLXGF=YES
+++ config.atmos_products[28]: export WGNE=YES
+++ config.atmos_products[28]: WGNE=YES
+++ config.atmos_products[29]: export FHMAX_WGNE=180
+++ config.atmos_products[29]: FHMAX_WGNE=180
+++ config.atmos_products[32]: export APCP_MSG=597
+++ config.atmos_products[32]: APCP_MSG=597
+++ config.atmos_products[35]: export paramlista=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/product/gfs.fFFF.paramlist.a.txt
+++ config.atmos_products[35]: paramlista=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/product/gfs.fFFF.paramlist.a.txt
+++ config.atmos_products[36]: export paramlista_anl=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/product/gfs.anl.paramlist.a.txt
+++ config.atmos_products[36]: paramlista_anl=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/product/gfs.anl.paramlist.a.txt
+++ config.atmos_products[37]: export paramlista_f000=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/product/gfs.f000.paramlist.a.txt
+++ config.atmos_products[37]: paramlista_f000=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/product/gfs.f000.paramlist.a.txt
+++ config.atmos_products[38]: export paramlistb=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/product/gfs.fFFF.paramlist.b.txt
+++ config.atmos_products[38]: paramlistb=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/product/gfs.fFFF.paramlist.b.txt
+++ config.atmos_products[40]: echo 'END: config.atmos_products'
END: config.atmos_products
++ jjob_header.sh[99]: status=0
++ jjob_header.sh[100]: (( status != 0 ))
++ jjob_header.sh[110]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/env/WCOSS2.env atmos_products
+++ WCOSS2.env[3]: [[ 1 -ne 1 ]]
+++ WCOSS2.env[15]: step=atmos_products
+++ WCOSS2.env[18]: export 'launcher=mpiexec -l'
+++ WCOSS2.env[18]: launcher='mpiexec -l'
+++ WCOSS2.env[19]: export 'mpmd_opt=--cpu-bind verbose,core cfp'
+++ WCOSS2.env[19]: mpmd_opt='--cpu-bind verbose,core cfp'
+++ WCOSS2.env[21]: [[ atmos_products = \p\r\e\p ]]
+++ WCOSS2.env[21]: [[ atmos_products = \p\r\e\p\b\u\f\r ]]
+++ WCOSS2.env[30]: [[ atmos_products = \p\r\e\p\s\n\o\w\o\b\s ]]
+++ WCOSS2.env[34]: [[ atmos_products = \p\r\e\p\_\e\m\i\s\s\i\o\n\s ]]
+++ WCOSS2.env[38]: [[ atmos_products = \w\a\v\e\i\n\i\t ]]
+++ WCOSS2.env[38]: [[ atmos_products = \w\a\v\e\p\r\e\p ]]
+++ WCOSS2.env[38]: [[ atmos_products = \w\a\v\e\p\o\s\t\s\b\s ]]
+++ WCOSS2.env[38]: [[ atmos_products = \w\a\v\e\p\o\s\t\b\n\d\p\n\t ]]
+++ WCOSS2.env[38]: [[ atmos_products = \w\a\v\e\p\o\s\t\b\n\d\p\n\t\b\l\l ]]
+++ WCOSS2.env[38]: [[ atmos_products = \w\a\v\e\p\o\s\t\p\n\t ]]
+++ WCOSS2.env[45]: [[ atmos_products = \a\t\m\a\n\l\v\a\r ]]
+++ WCOSS2.env[53]: [[ atmos_products = \a\t\m\e\n\s\a\n\l\l\e\t\k\f ]]
+++ WCOSS2.env[61]: [[ atmos_products = \a\t\m\e\n\s\a\n\l\f\v\3\i\n\c ]]
+++ WCOSS2.env[69]: [[ atmos_products = \a\e\r\o\a\n\l\r\u\n ]]
+++ WCOSS2.env[79]: [[ atmos_products = \s\n\o\w\a\n\l ]]
+++ WCOSS2.env[89]: [[ atmos_products = \a\t\m\a\n\l\f\v\3\i\n\c ]]
+++ WCOSS2.env[97]: [[ atmos_products = \a\n\a\l ]]
+++ WCOSS2.env[97]: [[ atmos_products = \a\n\a\l\c\a\l\c ]]
+++ WCOSS2.env[134]: [[ atmos_products = \s\f\c\a\n\l ]]
+++ WCOSS2.env[143]: [[ atmos_products = \e\o\b\s ]]
+++ WCOSS2.env[159]: [[ atmos_products = \e\u\p\d ]]
+++ WCOSS2.env[176]: [[ atmos_products = \f\c\s\t ]]
+++ WCOSS2.env[176]: [[ atmos_products = \e\f\c\s ]]
+++ WCOSS2.env[203]: [[ atmos_products = \u\p\p ]]
+++ WCOSS2.env[211]: [[ atmos_products = \a\t\m\o\s\_\p\r\o\d\u\c\t\s ]]
+++ WCOSS2.env[213]: export USE_CFP=YES
+++ WCOSS2.env[213]: USE_CFP=YES
++ jjob_header.sh[111]: status=0
++ jjob_header.sh[112]: (( status != 0 ))
+ JGLOBAL_ATMOS_PRODUCTS[12]: YMD=20211221
+ JGLOBAL_ATMOS_PRODUCTS[12]: HH=00
+ JGLOBAL_ATMOS_PRODUCTS[12]: declare_from_tmpl -rx COM_ATMOS_ANALYSIS COM_ATMOS_HISTORY COM_ATMOS_MASTER
+ bash_utils.sh[35]: [[ NO == \N\O ]]
+ bash_utils.sh[35]: set +x
declare_from_tmpl :: COM_ATMOS_ANALYSIS=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//analysis/atmos
declare_from_tmpl :: COM_ATMOS_HISTORY=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history
declare_from_tmpl :: COM_ATMOS_MASTER=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master
+ JGLOBAL_ATMOS_PRODUCTS[14]: for grid in '0p25' '0p50' '1p00'
+ JGLOBAL_ATMOS_PRODUCTS[15]: prod_dir=COM_ATMOS_GRIB_0p25
+ JGLOBAL_ATMOS_PRODUCTS[16]: GRID=0p25
+ JGLOBAL_ATMOS_PRODUCTS[16]: YMD=20211221
+ JGLOBAL_ATMOS_PRODUCTS[16]: HH=00
+ JGLOBAL_ATMOS_PRODUCTS[16]: declare_from_tmpl -rx COM_ATMOS_GRIB_0p25:COM_ATMOS_GRIB_GRID_TMPL
+ bash_utils.sh[35]: [[ NO == \N\O ]]
+ bash_utils.sh[35]: set +x
declare_from_tmpl :: COM_ATMOS_GRIB_0p25=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//products/atmos/grib2/0p25
+ JGLOBAL_ATMOS_PRODUCTS[17]: [[ ! -d /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//products/atmos/grib2/0p25 ]]
+ JGLOBAL_ATMOS_PRODUCTS[14]: for grid in '0p25' '0p50' '1p00'
+ JGLOBAL_ATMOS_PRODUCTS[15]: prod_dir=COM_ATMOS_GRIB_0p50
+ JGLOBAL_ATMOS_PRODUCTS[16]: GRID=0p50
+ JGLOBAL_ATMOS_PRODUCTS[16]: YMD=20211221
+ JGLOBAL_ATMOS_PRODUCTS[16]: HH=00
+ JGLOBAL_ATMOS_PRODUCTS[16]: declare_from_tmpl -rx COM_ATMOS_GRIB_0p50:COM_ATMOS_GRIB_GRID_TMPL
+ bash_utils.sh[35]: [[ NO == \N\O ]]
+ bash_utils.sh[35]: set +x
declare_from_tmpl :: COM_ATMOS_GRIB_0p50=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//products/atmos/grib2/0p50
+ JGLOBAL_ATMOS_PRODUCTS[17]: [[ ! -d /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//products/atmos/grib2/0p50 ]]
+ JGLOBAL_ATMOS_PRODUCTS[14]: for grid in '0p25' '0p50' '1p00'
+ JGLOBAL_ATMOS_PRODUCTS[15]: prod_dir=COM_ATMOS_GRIB_1p00
+ JGLOBAL_ATMOS_PRODUCTS[16]: GRID=1p00
+ JGLOBAL_ATMOS_PRODUCTS[16]: YMD=20211221
+ JGLOBAL_ATMOS_PRODUCTS[16]: HH=00
+ JGLOBAL_ATMOS_PRODUCTS[16]: declare_from_tmpl -rx COM_ATMOS_GRIB_1p00:COM_ATMOS_GRIB_GRID_TMPL
+ bash_utils.sh[35]: [[ NO == \N\O ]]
+ bash_utils.sh[35]: set +x
declare_from_tmpl :: COM_ATMOS_GRIB_1p00=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//products/atmos/grib2/1p00
+ JGLOBAL_ATMOS_PRODUCTS[17]: [[ ! -d /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//products/atmos/grib2/1p00 ]]
+ JGLOBAL_ATMOS_PRODUCTS[21]: export PREFIX=gfs.t00z.
+ JGLOBAL_ATMOS_PRODUCTS[21]: PREFIX=gfs.t00z.
+ JGLOBAL_ATMOS_PRODUCTS[25]: /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts/exglobal_atmos_products.sh
Begin exglobal_atmos_products.sh at Thu Jun 6 07:30:34 UTC 2024
+ exglobal_atmos_products.sh[6]: export WGRIB2=/apps/ops/para/libs/intel/19.1.3.304/wgrib2/2.0.8/bin/wgrib2
+ exglobal_atmos_products.sh[6]: WGRIB2=/apps/ops/para/libs/intel/19.1.3.304/wgrib2/2.0.8/bin/wgrib2
+ exglobal_atmos_products.sh[9]: INTERP_ATMOS_MASTERSH=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/interp_atmos_master.sh
+ exglobal_atmos_products.sh[10]: INTERP_ATMOS_SFLUXSH=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/interp_atmos_sflux.sh
+ exglobal_atmos_products.sh[13]: downset=2
+ exglobal_atmos_products.sh[14]: npe_atmos_products=24
+ exglobal_atmos_products.sh[17]: WGNE=YES
+ exglobal_atmos_products.sh[18]: FHMAX_WGNE=180
+ exglobal_atmos_products.sh[20]: cd /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/atmos_products.26124
+ exglobal_atmos_products.sh[24]: (( FORECAST_HOUR <= 0 ))
++ exglobal_atmos_products.sh[35]: printf f%03d 9
+ exglobal_atmos_products.sh[35]: fhr3=f009
+ exglobal_atmos_products.sh[36]: (( FORECAST_HOUR%FHOUT_PGBS == 0 ))
+ exglobal_atmos_products.sh[37]: PGBS=YES
+ exglobal_atmos_products.sh[45]: MASTER_FILE=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2f009
+ exglobal_atmos_products.sh[50]: grep -F -f /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/product/gfs.fFFF.paramlist.a.txt
+ exglobal_atmos_products.sh[50]: /apps/ops/para/libs/intel/19.1.3.304/wgrib2/2.0.8/bin/wgrib2 /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2f009
+ exglobal_atmos_products.sh[50]: /apps/ops/para/libs/intel/19.1.3.304/wgrib2/2.0.8/bin/wgrib2 -i -grib tmpfile_f009 /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2f009
*** FATAL ERROR: missing input file /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2f009 ***
*** FATAL ERROR: missing input file /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2f009 ***
+ exglobal_atmos_products.sh[1]: postamble exglobal_atmos_products.sh 1717659034 8
+ preamble.sh[70]: set +x
End exglobal_atmos_products.sh at 07:30:35 with error code 8 (time elapsed: 00:00:01)
+ JGLOBAL_ATMOS_PRODUCTS[1]: postamble JGLOBAL_ATMOS_PRODUCTS 1717659032 8
+ preamble.sh[70]: set +x
End JGLOBAL_ATMOS_PRODUCTS at 07:30:35 with error code 8 (time elapsed: 00:00:03)
+ atmos_products.sh[1]: postamble atmos_products.sh 1717659030 8
+ preamble.sh[70]: set +x
End atmos_products.sh at 07:30:35 with error code 8 (time elapsed: 00:00:05)
PBS: Running epilogue on parent mom node: nid001391...
##### Job 134425898.cbqs01 - PBS Job Script:
(Note: Duplicate #PBS entries are a function how PBS interprets and caches the original job script.)
#! /bin/sh
#PBS -N C96_atm3DVar_extended_9b290b28_gfsatmos_prod_f009-f015_00
#PBS -A GFS-DEV
#PBS -q dev
#PBS -l walltime=00:15:00
#PBS -l select=1:mpiprocs=24:ompthreads=1:ncpus=24
#PBS -j oe -o /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/logs/2021122100/gfsatmos_prod_f009-f015.log
#PBS -l place=vscatter:exclhost
export RUN_ENVIR='emc'
export HOMEgfs='/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow'
export EXPDIR='/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28'
export NET='gfs'
export CDUMP='gfs'
export RUN='gfs'
export CDATE='2021122100'
export PDY='20211221'
export cyc='00'
export COMROOT='/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT'
export DATAROOT='/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28'
export FHRLST='f009_f012_f015'
export COMPONENT='atmos'
set -x
/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/rocoto/atmos_products.sh
##### End of job script
------------------------------------------------------------------
Raw
gfsgoesupp_f009-f015.log
PBS: Running prologue on parent mom node: nid001395...
Job 134425900.cbqs01 nodelist: nid001395
+ /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/rocoto/upp.sh
Begin upp.sh at Thu Jun 6 07:30:30 UTC 2024
+ upp.sh[16]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/detect_machine.sh
++ detect_machine.sh[12]: [[ -n '' ]]
++ detect_machine.sh[15]: case $(hostname -f) in
+++ detect_machine.sh[15]: hostname -f
++ detect_machine.sh[45]: MACHINE_ID=UNKNOWN
++ detect_machine.sh[48]: [[ UNKNOWN == \U\N\K\N\O\W\N ]]
++ detect_machine.sh[49]: case ${PW_CSP:-} in
++ detect_machine.sh[51]: PW_CSP=UNKNOWN
++ detect_machine.sh[56]: MACHINE_ID=UNKNOWN
++ detect_machine.sh[59]: [[ UNKNOWN != \U\N\K\N\O\W\N ]]
++ detect_machine.sh[64]: [[ -d /lfs/h3 ]]
++ detect_machine.sh[66]: MACHINE_ID=wcoss2
+ upp.sh[17]: [[ wcoss2 = \w\c\o\s\s\2 ]]
+ upp.sh[18]: set +x
Resetting modules to system default. Reseting $MODULEPATH back to system default. All extra directories will be removed from $MODULEPATH.
The following have been reloaded with a version change:
1) crtm/2.4.0.1 => crtm/2.4.0
+ upp.sh[40]: wxflowPATH=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python:/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python/wxflow/src
+ upp.sh[41]: PYTHONPATH=/apps/prod/python-modules/3.8.6/intel/19.1.3.304/lib/python3.8/site-packages:/apps/ops/prod/nco/core/prod_util.v2.0.14/ush:/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python:/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python/wxflow/src
+ upp.sh[42]: export PYTHONPATH
+ upp.sh[44]: export job=upp
+ upp.sh[44]: job=upp
+ upp.sh[45]: export jobid=upp.206811
+ upp.sh[45]: jobid=upp.206811
basename: extra operand ‘ROOT/PR/2649/global-workflow/jobs/rocoto/upp.sh’
Try 'basename --help' for more information.
+ [49]: IFS=_
basename: extra operand ‘ROOT/PR/2649/global-workflow/jobs/rocoto/upp.sh’
Try 'basename --help' for more information.
+ [49]: read -ra fhrs
+ upp.sh[52]: for fhr in "${fhrs[@]}"
+ upp.sh[53]: export FORECAST_HOUR=9
+ upp.sh[53]: FORECAST_HOUR=9
+ upp.sh[54]: /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/JGLOBAL_ATMOS_UPP
Begin JGLOBAL_ATMOS_UPP at Thu Jun 6 07:30:34 UTC 2024
+ JGLOBAL_ATMOS_UPP[4]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/jjob_header.sh -e upp -c 'base upp'
++ jjob_header.sh[44]: OPTIND=1
++ jjob_header.sh[45]: getopts c:e: option
++ jjob_header.sh[46]: case "${option}" in
++ jjob_header.sh[48]: env_job=upp
++ jjob_header.sh[45]: getopts c:e: option
++ jjob_header.sh[46]: case "${option}" in
++ jjob_header.sh[47]: read -ra configs
++ jjob_header.sh[45]: getopts c:e: option
++ jjob_header.sh[59]: shift 4
++ jjob_header.sh[61]: [[ -z upp ]]
++ jjob_header.sh[69]: export DATA=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811
++ jjob_header.sh[69]: DATA=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811
++ jjob_header.sh[70]: [[ YES == \Y\E\S ]]
++ jjob_header.sh[71]: rm -rf /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811
++ jjob_header.sh[73]: mkdir -p /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811
++ jjob_header.sh[74]: cd /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811
++ jjob_header.sh[80]: export cycle=t00z
++ jjob_header.sh[80]: cycle=t00z
++ jjob_header.sh[81]: setpdy.sh
completed cleanly
completed cleanly
Source PDY script to export PDYm7, ..., PDY, ..., PDYp7 variables.
++ jjob_header.sh[82]: source ./PDY
+++ PDY[1]: export PDYm7=20211214
+++ PDY[1]: PDYm7=20211214
+++ PDY[2]: export PDYm6=20211215
+++ PDY[2]: PDYm6=20211215
+++ PDY[3]: export PDYm5=20211216
+++ PDY[3]: PDYm5=20211216
+++ PDY[4]: export PDYm4=20211217
+++ PDY[4]: PDYm4=20211217
+++ PDY[5]: export PDYm3=20211218
+++ PDY[5]: PDYm3=20211218
+++ PDY[6]: export PDYm2=20211219
+++ PDY[6]: PDYm2=20211219
+++ PDY[7]: export PDYm1=20211220
+++ PDY[7]: PDYm1=20211220
+++ PDY[8]: export PDY=20211221
+++ PDY[8]: PDY=20211221
+++ PDY[9]: export PDYp1=20211222
+++ PDY[9]: PDYp1=20211222
+++ PDY[10]: export PDYp2=20211223
+++ PDY[10]: PDYp2=20211223
+++ PDY[11]: export PDYp3=20211224
+++ PDY[11]: PDYp3=20211224
+++ PDY[12]: export PDYp4=20211225
+++ PDY[12]: PDYp4=20211225
+++ PDY[13]: export PDYp5=20211226
+++ PDY[13]: PDYp5=20211226
+++ PDY[14]: export PDYp6=20211227
+++ PDY[14]: PDYp6=20211227
+++ PDY[15]: export PDYp7=20211228
+++ PDY[15]: PDYp7=20211228
++ jjob_header.sh[88]: export pid=208759
++ jjob_header.sh[88]: pid=208759
++ jjob_header.sh[89]: export pgmout=OUTPUT.208759
++ jjob_header.sh[89]: pgmout=OUTPUT.208759
++ jjob_header.sh[90]: export pgmerr=errfile
++ jjob_header.sh[90]: pgmerr=errfile
++ jjob_header.sh[96]: export EXPDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28
++ jjob_header.sh[96]: EXPDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28
++ jjob_header.sh[97]: for config in "${configs[@]:-''}"
++ jjob_header.sh[98]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28/config.base
+++ config.base[6]: echo 'BEGIN: config.base'
BEGIN: config.base
+++ config.base[9]: export machine=WCOSS2
+++ config.base[9]: machine=WCOSS2
+++ config.base[12]: export RUN_ENVIR=emc
+++ config.base[12]: RUN_ENVIR=emc
+++ config.base[15]: export ACCOUNT=GFS-DEV
+++ config.base[15]: ACCOUNT=GFS-DEV
+++ config.base[16]: export ACCOUNT_SERVICE=GFS-DEV
+++ config.base[16]: ACCOUNT_SERVICE=GFS-DEV
+++ config.base[17]: export QUEUE=dev
+++ config.base[17]: QUEUE=dev
+++ config.base[18]: export QUEUE_SERVICE=dev_transfer
+++ config.base[18]: QUEUE_SERVICE=dev_transfer
+++ config.base[19]: export PARTITION_BATCH=
+++ config.base[19]: PARTITION_BATCH=
+++ config.base[20]: export PARTITION_SERVICE=
+++ config.base[20]: PARTITION_SERVICE=
+++ config.base[21]: export RESERVATION=
+++ config.base[21]: RESERVATION=
+++ config.base[24]: export HPSS_PROJECT=emc-global
+++ config.base[24]: HPSS_PROJECT=emc-global
+++ config.base[27]: export HOMEgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow
+++ config.base[27]: HOMEgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow
+++ config.base[28]: export EXECgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/exec
+++ config.base[28]: EXECgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/exec
+++ config.base[29]: export FIXgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix
+++ config.base[29]: FIXgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix
+++ config.base[30]: export PARMgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm
+++ config.base[30]: PARMgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm
+++ config.base[31]: export SCRgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts
+++ config.base[31]: SCRgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts
+++ config.base[32]: export USHgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush
+++ config.base[32]: USHgfs=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush
+++ config.base[34]: export FIXam=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/am
+++ config.base[34]: FIXam=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/am
+++ config.base[35]: export FIXaer=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/aer
+++ config.base[35]: FIXaer=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/aer
+++ config.base[36]: export FIXcpl=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/cpl
+++ config.base[36]: FIXcpl=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/cpl
+++ config.base[37]: export FIXlut=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/lut
+++ config.base[37]: FIXlut=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/lut
+++ config.base[38]: export FIXorog=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/orog
+++ config.base[38]: FIXorog=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/orog
+++ config.base[39]: export FIXcice=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/cice
+++ config.base[39]: FIXcice=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/cice
+++ config.base[40]: export FIXmom=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/mom6
+++ config.base[40]: FIXmom=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/mom6
+++ config.base[41]: export FIXreg2grb2=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/reg2grb2
+++ config.base[41]: FIXreg2grb2=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/reg2grb2
+++ config.base[42]: export FIXugwd=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/ugwd
+++ config.base[42]: FIXugwd=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/ugwd
+++ config.base[43]: export FIXgdas=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/gdas
+++ config.base[43]: FIXgdas=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/gdas
+++ config.base[48]: export PACKAGEROOT=/lfs/h1/ops/prod/packages
+++ config.base[48]: PACKAGEROOT=/lfs/h1/ops/prod/packages
+++ config.base[49]: export COMROOT=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT
+++ config.base[49]: COMROOT=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT
+++ config.base[50]: export COMINsyn=/lfs/h1/ops/prod/com/gfs/v16.3/syndat
+++ config.base[50]: COMINsyn=/lfs/h1/ops/prod/com/gfs/v16.3/syndat
+++ config.base[51]: export DMPDIR=/lfs/h2/emc/dump/noscrub/dump
+++ config.base[51]: DMPDIR=/lfs/h2/emc/dump/noscrub/dump
+++ config.base[52]: export BASE_CPLIC=/lfs/h2/emc/global/noscrub/emc.global/data/ICSDIR/prototype_ICs
+++ config.base[52]: BASE_CPLIC=/lfs/h2/emc/global/noscrub/emc.global/data/ICSDIR/prototype_ICs
+++ config.base[56]: export COMINecmwf=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ecmwf
+++ config.base[56]: COMINecmwf=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ecmwf
+++ config.base[57]: export COMINnam=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/nam
+++ config.base[57]: COMINnam=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/nam
+++ config.base[58]: export COMINukmet=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ukmet
+++ config.base[58]: COMINukmet=/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ukmet
+++ config.base[61]: export HOMEDIR=/lfs/h2/emc/global/noscrub/terry.mcguinness
+++ config.base[61]: HOMEDIR=/lfs/h2/emc/global/noscrub/terry.mcguinness
+++ config.base[62]: export STMP=/lfs/h2/emc/stmp/terry.mcguinness
+++ config.base[62]: STMP=/lfs/h2/emc/stmp/terry.mcguinness
+++ config.base[63]: export PTMP=/lfs/h2/emc/ptmp/terry.mcguinness
+++ config.base[63]: PTMP=/lfs/h2/emc/ptmp/terry.mcguinness
+++ config.base[64]: export NOSCRUB=/lfs/h2/emc/global/noscrub/terry.mcguinness
+++ config.base[64]: NOSCRUB=/lfs/h2/emc/global/noscrub/terry.mcguinness
+++ config.base[67]: export BASE_GIT=/lfs/h2/emc/global/save/emc.global/git
+++ config.base[67]: BASE_GIT=/lfs/h2/emc/global/save/emc.global/git
+++ config.base[70]: export DO_GOES=YES
+++ config.base[70]: DO_GOES=YES
+++ config.base[71]: export DO_BUFRSND=YES
+++ config.base[71]: DO_BUFRSND=YES
+++ config.base[72]: export DO_GEMPAK=YES
+++ config.base[72]: DO_GEMPAK=YES
+++ config.base[73]: export DO_AWIPS=NO
+++ config.base[73]: DO_AWIPS=NO
+++ config.base[74]: export DO_NPOESS=YES
+++ config.base[74]: DO_NPOESS=YES
+++ config.base[75]: export DO_TRACKER=YES
+++ config.base[75]: DO_TRACKER=YES
+++ config.base[76]: export DO_GENESIS=YES
+++ config.base[76]: DO_GENESIS=YES
+++ config.base[77]: export DO_GENESIS_FSU=NO
+++ config.base[77]: DO_GENESIS_FSU=NO
+++ config.base[78]: export DO_VERFOZN=YES
+++ config.base[78]: DO_VERFOZN=YES
+++ config.base[79]: export DO_VERFRAD=YES
+++ config.base[79]: DO_VERFRAD=YES
+++ config.base[80]: export DO_VMINMON=YES
+++ config.base[80]: DO_VMINMON=YES
+++ config.base[81]: export DO_MOS=NO
+++ config.base[81]: DO_MOS=NO
+++ config.base[87]: export REALTIME=YES
+++ config.base[87]: REALTIME=YES
+++ config.base[90]: export MODE=cycled
+++ config.base[90]: MODE=cycled
+++ config.base[99]: export FIXgsi=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/gsi
+++ config.base[99]: FIXgsi=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/fix/gsi
+++ config.base[100]: export HOMEpost=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow
+++ config.base[100]: HOMEpost=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow
+++ config.base[101]: export HOMEobsproc=/lfs/h2/emc/global/save/emc.global/git/obsproc/v1.1.2
+++ config.base[101]: HOMEobsproc=/lfs/h2/emc/global/save/emc.global/git/obsproc/v1.1.2
+++ config.base[104]: export 'NCP=/bin/cp -p'
+++ config.base[104]: NCP='/bin/cp -p'
+++ config.base[105]: export NMV=/bin/mv
+++ config.base[105]: NMV=/bin/mv
+++ config.base[106]: export 'NLN=/bin/ln -sf'
+++ config.base[106]: NLN='/bin/ln -sf'
+++ config.base[107]: export VERBOSE=YES
+++ config.base[107]: VERBOSE=YES
+++ config.base[108]: export KEEPDATA=NO
+++ config.base[108]: KEEPDATA=NO
+++ config.base[109]: export DEBUG_POSTSCRIPT=NO
+++ config.base[109]: DEBUG_POSTSCRIPT=NO
+++ config.base[110]: export CHGRP_RSTPROD=YES
+++ config.base[110]: CHGRP_RSTPROD=YES
+++ config.base[111]: export 'CHGRP_CMD=chgrp rstprod'
+++ config.base[111]: CHGRP_CMD='chgrp rstprod'
+++ config.base[112]: export NCDUMP=/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/netcdf/4.7.4/bin/ncdump
+++ config.base[112]: NCDUMP=/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/netcdf/4.7.4/bin/ncdump
+++ config.base[113]: export NCLEN=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/getncdimlen
+++ config.base[113]: NCLEN=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/getncdimlen
+++ config.base[116]: export BASE_ENV=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/env
+++ config.base[116]: BASE_ENV=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/env
+++ config.base[117]: export BASE_JOB=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/rocoto
+++ config.base[117]: BASE_JOB=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/rocoto
+++ config.base[120]: export SDATE=2021122018
+++ config.base[120]: SDATE=2021122018
+++ config.base[121]: export EDATE=2021122118
+++ config.base[121]: EDATE=2021122118
+++ config.base[122]: export EXP_WARM_START=.false.
+++ config.base[122]: EXP_WARM_START=.false.
+++ config.base[123]: export assim_freq=6
+++ config.base[123]: assim_freq=6
+++ config.base[124]: export PSLOT=C96_atm3DVar_extended_9b290b28
+++ config.base[124]: PSLOT=C96_atm3DVar_extended_9b290b28
+++ config.base[125]: export EXPDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28
+++ config.base[125]: EXPDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28
+++ config.base[126]: export ROTDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28
+++ config.base[126]: ROTDIR=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28
+++ config.base[127]: export ROTDIR_DUMP=YES
+++ config.base[127]: ROTDIR_DUMP=YES
+++ config.base[128]: export DUMP_SUFFIX=
+++ config.base[128]: DUMP_SUFFIX=
+++ config.base[129]: [[ 2021122100 -ge 2019092100 ]]
+++ config.base[129]: [[ 2021122100 -le 2019110700 ]]
+++ config.base[132]: export DATAROOT=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28
+++ config.base[132]: DATAROOT=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28
+++ config.base[133]: export RUNDIR=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28
+++ config.base[133]: RUNDIR=/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28
+++ config.base[134]: export ARCDIR=/lfs/h2/emc/global/noscrub/terry.mcguinness/archive/C96_atm3DVar_extended_9b290b28
+++ config.base[134]: ARCDIR=/lfs/h2/emc/global/noscrub/terry.mcguinness/archive/C96_atm3DVar_extended_9b290b28
+++ config.base[135]: export ATARDIR=/NCEPDEV/emc-global/1year/terry.mcguinness/WCOSS2/scratch/C96_atm3DVar_extended_9b290b28
+++ config.base[135]: ATARDIR=/NCEPDEV/emc-global/1year/terry.mcguinness/WCOSS2/scratch/C96_atm3DVar_extended_9b290b28
+++ config.base[138]: export envir=prod
+++ config.base[138]: envir=prod
+++ config.base[139]: export NET=gfs
+++ config.base[139]: NET=gfs
+++ config.base[140]: export RUN=gfs
+++ config.base[140]: RUN=gfs
+++ config.base[146]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28/config.com
++++ config.com[4]: echo 'BEGIN: config.com'
BEGIN: config.com
++++ config.com[37]: [[ emc == \n\c\o ]]
++++ config.com[41]: COM_OBS_TMPL='${ROTDIR}/${RUN}.${YMD}/${HH}/obs'
++++ config.com[42]: COM_RTOFS_TMPL='${DMPDIR}'
++++ config.com[44]: declare -rx COM_OBS_TMPL COM_RTOFS_TMPL
++++ config.com[45]: declare -rx 'COM_OBSDMP_TMPL=${DMPDIR}/${DUMP}${DUMP_SUFFIX}.${YMD}/${HH}/atmos'
++++ config.com[47]: COM_BASE='${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}'
++++ config.com[49]: declare -rx 'COM_TOP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}'
++++ config.com[51]: declare -rx 'COM_CONF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/conf'
++++ config.com[52]: declare -rx 'COM_ATMOS_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/input'
++++ config.com[53]: declare -rx 'COM_ATMOS_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/restart'
++++ config.com[54]: declare -rx 'COM_ATMOS_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/atmos'
++++ config.com[55]: declare -rx 'COM_SNOW_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow'
++++ config.com[56]: declare -rx 'COM_ATMOS_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/history'
++++ config.com[57]: declare -rx 'COM_ATMOS_MASTER_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/atmos/master'
++++ config.com[58]: declare -rx 'COM_ATMOS_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2'
++++ config.com[59]: declare -rx 'COM_ATMOS_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2/${GRID}'
++++ config.com[60]: declare -rx 'COM_ATMOS_BUFR_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr'
++++ config.com[61]: declare -rx 'COM_ATMOS_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}'
++++ config.com[62]: declare -rx 'COM_ATMOS_GENESIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital'
++++ config.com[63]: declare -rx 'COM_ATMOS_TRACK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks'
++++ config.com[64]: declare -rx 'COM_ATMOS_GOES_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/goes_sim'
++++ config.com[65]: declare -rx 'COM_ATMOS_IMAGERY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/imagery'
++++ config.com[66]: declare -rx 'COM_ATMOS_OZNMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon'
++++ config.com[67]: declare -rx 'COM_ATMOS_RADMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/radmon'
++++ config.com[68]: declare -rx 'COM_ATMOS_MINMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/minmon'
++++ config.com[69]: declare -rx 'COM_ATMOS_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/wmo'
++++ config.com[71]: declare -rx 'COM_WAVE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/restart'
++++ config.com[72]: declare -rx 'COM_WAVE_PREP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/prep'
++++ config.com[73]: declare -rx 'COM_WAVE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/wave/history'
++++ config.com[74]: declare -rx 'COM_WAVE_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gridded'
++++ config.com[75]: declare -rx 'COM_WAVE_STATION_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/station'
++++ config.com[76]: declare -rx 'COM_WAVE_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gempak'
++++ config.com[77]: declare -rx 'COM_WAVE_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/wmo'
++++ config.com[79]: declare -rx 'COM_OCEAN_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/history'
++++ config.com[80]: declare -rx 'COM_OCEAN_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/restart'
++++ config.com[81]: declare -rx 'COM_OCEAN_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/input'
++++ config.com[82]: declare -rx 'COM_OCEAN_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ocean'
++++ config.com[83]: declare -rx 'COM_OCEAN_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/netcdf'
++++ config.com[84]: declare -rx 'COM_OCEAN_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2'
++++ config.com[85]: declare -rx 'COM_OCEAN_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}'
++++ config.com[87]: declare -rx 'COM_ICE_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ice'
++++ config.com[88]: declare -rx 'COM_ICE_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/input'
++++ config.com[89]: declare -rx 'COM_ICE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/history'
++++ config.com[90]: declare -rx 'COM_ICE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/restart'
++++ config.com[91]: declare -rx 'COM_ICE_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/netcdf'
++++ config.com[92]: declare -rx 'COM_ICE_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2'
++++ config.com[93]: declare -rx 'COM_ICE_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}'
++++ config.com[95]: declare -rx 'COM_CHEM_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/chem/history'
++++ config.com[96]: declare -rx 'COM_CHEM_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem'
++++ config.com[98]: declare -rx 'COM_MED_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/med/restart'
+++ config.base[149]: export 'ERRSCRIPT=eval [[ $err = 0 ]]'
+++ config.base[149]: ERRSCRIPT='eval [[ $err = 0 ]]'
+++ config.base[150]: export LOGSCRIPT=
+++ config.base[150]: LOGSCRIPT=
+++ config.base[153]: export 'REDOUT=1>'
+++ config.base[153]: REDOUT='1>'
+++ config.base[154]: export 'REDERR=2>'
+++ config.base[154]: REDERR='2>'
+++ config.base[156]: export SENDECF=NO
+++ config.base[156]: SENDECF=NO
+++ config.base[157]: export SENDSDM=NO
+++ config.base[157]: SENDSDM=NO
+++ config.base[158]: export SENDDBN_NTC=NO
+++ config.base[158]: SENDDBN_NTC=NO
+++ config.base[159]: export SENDDBN=NO
+++ config.base[159]: SENDDBN=NO
+++ config.base[160]: export DBNROOT=/apps/ops/prod/nco/core/prod_util.v2.0.14/fakedbn
+++ config.base[160]: DBNROOT=/apps/ops/prod/nco/core/prod_util.v2.0.14/fakedbn
+++ config.base[163]: export APP=ATM
+++ config.base[163]: APP=ATM
+++ config.base[165]: shopt -s extglob
+++ config.base[167]: case "${RUN}" in
+++ config.base[174]: shopt -u extglob
+++ config.base[177]: export DO_ATM=YES
+++ config.base[177]: DO_ATM=YES
+++ config.base[178]: export DO_COUPLED=NO
+++ config.base[178]: DO_COUPLED=NO
+++ config.base[179]: export DO_WAVE=NO
+++ config.base[179]: DO_WAVE=NO
+++ config.base[180]: export DO_OCN=NO
+++ config.base[180]: DO_OCN=NO
+++ config.base[181]: export DO_ICE=NO
+++ config.base[181]: DO_ICE=NO
+++ config.base[182]: export DO_AERO=NO
+++ config.base[182]: DO_AERO=NO
+++ config.base[183]: export AERO_FCST_CDUMP=
+++ config.base[183]: AERO_FCST_CDUMP=
+++ config.base[184]: export AERO_ANL_CDUMP=
+++ config.base[184]: AERO_ANL_CDUMP=
+++ config.base[185]: export WAVE_CDUMP=
+++ config.base[185]: WAVE_CDUMP=
+++ config.base[186]: export DOBNDPNT_WAVE=NO
+++ config.base[186]: DOBNDPNT_WAVE=NO
+++ config.base[187]: export DOIBP_WAV=NO
+++ config.base[187]: DOIBP_WAV=NO
+++ config.base[188]: export FRAC_GRID=.true.
+++ config.base[188]: FRAC_GRID=.true.
+++ config.base[189]: export DO_NEST=NO
+++ config.base[189]: DO_NEST=NO
+++ config.base[190]: [[ NO == \Y\E\S ]]
+++ config.base[194]: export ntiles=6
+++ config.base[194]: ntiles=6
+++ config.base[198]: export OPS_RES=C768
+++ config.base[198]: OPS_RES=C768
+++ config.base[201]: export LEVS=128
+++ config.base[201]: LEVS=128
+++ config.base[202]: export CASE=C96
+++ config.base[202]: CASE=C96
+++ config.base[203]: export CASE_ENS=@CASEENS@
+++ config.base[203]: CASE_ENS=@CASEENS@
+++ config.base[204]: export OCNRES=500
+++ config.base[204]: OCNRES=500
+++ config.base[205]: export ICERES=500
+++ config.base[205]: ICERES=500
+++ config.base[208]: case "${CASE}" in
+++ config.base[213]: export waveGRD=uglo_100km
+++ config.base[213]: waveGRD=uglo_100km
+++ config.base[227]: case "${APP}" in
+++ config.base[268]: [[ gfs =~ gdas ]]
+++ config.base[271]: [[ gfs =~ gfs ]]
+++ config.base[272]: export FHCYC=24
+++ config.base[272]: FHCYC=24
+++ config.base[276]: export FHMIN=0
+++ config.base[276]: FHMIN=0
+++ config.base[277]: export FHMAX=9
+++ config.base[277]: FHMAX=9
+++ config.base[278]: export FHOUT=3
+++ config.base[278]: FHOUT=3
+++ config.base[279]: export FHOUT_OCNICE=3
+++ config.base[279]: FHOUT_OCNICE=3
+++ config.base[282]: export EUPD_CYC=gdas
+++ config.base[282]: EUPD_CYC=gdas
+++ config.base[285]: export gfs_cyc=4
+++ config.base[285]: gfs_cyc=4
+++ config.base[288]: export FHMIN_GFS=0
+++ config.base[288]: FHMIN_GFS=0
+++ config.base[289]: export FHMAX_GFS=384
+++ config.base[289]: FHMAX_GFS=384
+++ config.base[290]: export FHOUT_GFS=3
+++ config.base[290]: FHOUT_GFS=3
+++ config.base[291]: export FHMAX_HF_GFS=0
+++ config.base[291]: FHMAX_HF_GFS=0
+++ config.base[292]: export FHOUT_HF_GFS=1
+++ config.base[292]: FHOUT_HF_GFS=1
+++ config.base[293]: export FHOUT_OCNICE_GFS=6
+++ config.base[293]: FHOUT_OCNICE_GFS=6
+++ config.base[294]: export FHMIN_WAV=0
+++ config.base[294]: FHMIN_WAV=0
+++ config.base[295]: export FHOUT_WAV=3
+++ config.base[295]: FHOUT_WAV=3
+++ config.base[296]: export FHMAX_HF_WAV=120
+++ config.base[296]: FHMAX_HF_WAV=120
+++ config.base[297]: export FHOUT_HF_WAV=1
+++ config.base[297]: FHOUT_HF_WAV=1
+++ config.base[298]: export FHMAX_WAV=9
+++ config.base[298]: FHMAX_WAV=9
+++ config.base[299]: export FHMAX_WAV_GFS=384
+++ config.base[299]: FHMAX_WAV_GFS=384
+++ config.base[300]: (( gfs_cyc != 0 ))
+++ config.base[301]: export STEP_GFS=6
+++ config.base[301]: STEP_GFS=6
+++ config.base[306]: export ILPOST=1
+++ config.base[306]: ILPOST=1
+++ config.base[307]: (( FHMAX_HF_GFS < 120 ))
+++ config.base[308]: export ILPOST=3
+++ config.base[308]: ILPOST=3
+++ config.base[312]: export restart_interval_gfs=12
+++ config.base[312]: restart_interval_gfs=12
+++ config.base[317]: export QUILTING=.true.
+++ config.base[317]: QUILTING=.true.
+++ config.base[318]: export OUTPUT_GRID=gaussian_grid
+++ config.base[318]: OUTPUT_GRID=gaussian_grid
+++ config.base[319]: export WRITE_DOPOST=.true.
+++ config.base[319]: WRITE_DOPOST=.true.
+++ config.base[320]: export WRITE_NSFLIP=.true.
+++ config.base[320]: WRITE_NSFLIP=.true.
+++ config.base[323]: export DOIAU=YES
+++ config.base[323]: DOIAU=YES
+++ config.base[324]: export IAUFHRS=3,6,9
+++ config.base[324]: IAUFHRS=3,6,9
+++ config.base[325]: export IAU_FHROT=3
+++ config.base[325]: IAU_FHROT=3
+++ config.base[326]: export IAU_DELTHRS=6
+++ config.base[326]: IAU_DELTHRS=6
+++ config.base[327]: export IAU_OFFSET=6
+++ config.base[327]: IAU_OFFSET=6
+++ config.base[328]: export DOIAU_ENKF=YES
+++ config.base[328]: DOIAU_ENKF=YES
+++ config.base[329]: export IAUFHRS_ENKF=3,6,9
+++ config.base[329]: IAUFHRS_ENKF=3,6,9
+++ config.base[330]: export IAU_DELTHRS_ENKF=6
+++ config.base[330]: IAU_DELTHRS_ENKF=6
+++ config.base[333]: export lobsdiag_forenkf=.true.
+++ config.base[333]: lobsdiag_forenkf=.true.
+++ config.base[341]: export imp_physics=8
+++ config.base[341]: imp_physics=8
+++ config.base[345]: export DO_JEDIATMVAR=NO
+++ config.base[345]: DO_JEDIATMVAR=NO
+++ config.base[346]: export DO_JEDIATMENS=NO
+++ config.base[346]: DO_JEDIATMENS=NO
+++ config.base[347]: export DO_JEDIOCNVAR=NO
+++ config.base[347]: DO_JEDIOCNVAR=NO
+++ config.base[348]: export DO_JEDISNOWDA=NO
+++ config.base[348]: DO_JEDISNOWDA=NO
+++ config.base[349]: export DO_MERGENSST=NO
+++ config.base[349]: DO_MERGENSST=NO
+++ config.base[352]: export DOHYBVAR=NO
+++ config.base[352]: DOHYBVAR=NO
+++ config.base[353]: export NMEM_ENS=0
+++ config.base[353]: NMEM_ENS=0
+++ config.base[354]: export SMOOTH_ENKF=NO
+++ config.base[354]: SMOOTH_ENKF=NO
+++ config.base[355]: export l4densvar=.true.
+++ config.base[355]: l4densvar=.true.
+++ config.base[356]: export lwrite4danl=.true.
+++ config.base[356]: lwrite4danl=.true.
+++ config.base[357]: export DO_CALC_INCREMENT=NO
+++ config.base[357]: DO_CALC_INCREMENT=NO
+++ config.base[360]: export NMEM_ENS_GFS=30
+++ config.base[360]: NMEM_ENS_GFS=30
+++ config.base[361]: export NMEM_ENS_GFS_OFFSET=20
+++ config.base[361]: NMEM_ENS_GFS_OFFSET=20
+++ config.base[362]: export DO_CALC_INCREMENT_ENKF_GFS=NO
+++ config.base[362]: DO_CALC_INCREMENT_ENKF_GFS=NO
+++ config.base[365]: [[ NO = \Y\E\S ]]
+++ config.base[379]: [[ NO == \N\O ]]
+++ config.base[379]: [[ YES == \Y\E\S ]]
+++ config.base[380]: export IAUFHRS=6
+++ config.base[380]: IAUFHRS=6
+++ config.base[381]: export IAU_FHROT=3
+++ config.base[381]: IAU_FHROT=3
+++ config.base[382]: export IAU_FILTER_INCREMENTS=.true.
+++ config.base[382]: IAU_FILTER_INCREMENTS=.true.
+++ config.base[383]: export IAUFHRS_ENKF=6
+++ config.base[383]: IAUFHRS_ENKF=6
+++ config.base[387]: export ENKF_SPREAD=YES
+++ config.base[387]: ENKF_SPREAD=YES
+++ config.base[390]: [[ cycled = \c\y\c\l\e\d ]]
+++ config.base[390]: [[ 2021122018 = \2\0\2\1\1\2\2\1\0\0 ]]
+++ config.base[390]: [[ YES = \N\O ]]
+++ config.base[390]: [[ cycled = \f\o\r\e\c\a\s\t\-\o\n\l\y ]]
+++ config.base[396]: [[ YES = \N\O ]]
+++ config.base[400]: [[ YES == \Y\E\S ]]
+++ config.base[401]: export restart_interval_enkfgdas=3
+++ config.base[401]: restart_interval_enkfgdas=3
+++ config.base[406]: export restart_interval_enkfgfs=3
+++ config.base[406]: restart_interval_enkfgfs=3
+++ config.base[408]: [[ YES == \Y\E\S ]]
+++ config.base[409]: export restart_interval_gdas=3
+++ config.base[409]: restart_interval_gdas=3
+++ config.base[414]: export GSI_SOILANAL=NO
+++ config.base[414]: GSI_SOILANAL=NO
+++ config.base[417]: export DONST=YES
+++ config.base[417]: DONST=YES
+++ config.base[418]: [[ YES = \Y\E\S ]]
+++ config.base[418]: export 'FNTSFA= '
+++ config.base[418]: FNTSFA=' '
+++ config.base[421]: export nst_anl=.true.
+++ config.base[421]: nst_anl=.true.
+++ config.base[424]: export MAKE_NSSTBUFR=NO
+++ config.base[424]: MAKE_NSSTBUFR=NO
+++ config.base[427]: export MAKE_ACFTBUFR=NO
+++ config.base[427]: MAKE_ACFTBUFR=NO
+++ config.base[430]: export 'INCREMENTS_TO_ZERO='\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[430]: INCREMENTS_TO_ZERO=''\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[433]: export 'INCVARS_ZERO_STRAT='\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[433]: INCVARS_ZERO_STRAT=''\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\'''
+++ config.base[434]: export INCVARS_EFOLD=5
+++ config.base[434]: INCVARS_EFOLD=5
+++ config.base[439]: export netcdf_diag=.true.
+++ config.base[439]: netcdf_diag=.true.
+++ config.base[440]: export binary_diag=.false.
+++ config.base[440]: binary_diag=.false.
+++ config.base[443]: export DO_METP=NO
+++ config.base[443]: DO_METP=NO
+++ config.base[444]: export DO_FIT2OBS=YES
+++ config.base[444]: DO_FIT2OBS=YES
+++ config.base[445]: export DO_VRFY_OCEANDA=NO
+++ config.base[445]: DO_VRFY_OCEANDA=NO
+++ config.base[448]: export FHMAX_FITS=132
+++ config.base[448]: FHMAX_FITS=132
+++ config.base[449]: [[ 132 -gt 384 ]]
+++ config.base[452]: export HPSSARCH=NO
+++ config.base[452]: HPSSARCH=NO
+++ config.base[453]: export LOCALARCH=NO
+++ config.base[453]: LOCALARCH=NO
+++ config.base[454]: [[ NO = \Y\E\S ]]
+++ config.base[458]: export ARCH_CYC=00
+++ config.base[458]: ARCH_CYC=00
+++ config.base[459]: export ARCH_WARMICFREQ=4
+++ config.base[459]: ARCH_WARMICFREQ=4
+++ config.base[460]: export ARCH_FCSTICFREQ=1
+++ config.base[460]: ARCH_FCSTICFREQ=1
+++ config.base[463]: [[ NO = \Y\E\S ]]
+++ config.base[470]: export NUM_SND_COLLECTIVES=9
+++ config.base[470]: NUM_SND_COLLECTIVES=9
+++ config.base[472]: echo 'END: config.base'
END: config.base
++ jjob_header.sh[99]: status=0
++ jjob_header.sh[100]: (( status != 0 ))
++ jjob_header.sh[97]: for config in "${configs[@]:-''}"
++ jjob_header.sh[98]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28/config.upp
+++ config.upp[6]: echo 'BEGIN: config.upp'
BEGIN: config.upp
+++ config.upp[9]: . /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28/config.resources upp
++++ config.resources[7]: (( 1 != 1 ))
++++ config.resources[31]: step=upp
++++ config.resources[33]: echo 'BEGIN: config.resources'
BEGIN: config.resources
++++ config.resources[35]: case ${machine} in
++++ config.resources[36]: npe_node_max=128
++++ config.resources[72]: export npe_node_max
++++ config.resources[74]: case ${step} in
++++ config.resources[776]: case "${CASE}" in
++++ config.resources[778]: export npe_upp=96
++++ config.resources[778]: npe_upp=96
++++ config.resources[794]: [[ WCOSS2 == \J\E\T ]]
++++ config.resources[795]: export npe_node_upp=96
++++ config.resources[795]: npe_node_upp=96
++++ config.resources[797]: export nth_upp=1
++++ config.resources[797]: nth_upp=1
++++ config.resources[799]: export wtime_upp=00:15:00
++++ config.resources[799]: wtime_upp=00:15:00
++++ config.resources[800]: (( npe_node_upp > npe_node_max ))
++++ config.resources[803]: export is_exclusive=True
++++ config.resources[803]: is_exclusive=True
++++ config.resources[1300]: echo 'END: config.resources'
END: config.resources
+++ config.upp[11]: export UPP_CONFIG=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/upp.yaml
+++ config.upp[11]: UPP_CONFIG=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/upp.yaml
+++ config.upp[14]: export NFHRS_PER_GROUP=3
+++ config.upp[14]: NFHRS_PER_GROUP=3
+++ config.upp[16]: echo 'END: config.upp'
END: config.upp
++ jjob_header.sh[99]: status=0
++ jjob_header.sh[100]: (( status != 0 ))
++ jjob_header.sh[110]: source /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/env/WCOSS2.env upp
+++ WCOSS2.env[3]: [[ 1 -ne 1 ]]
+++ WCOSS2.env[15]: step=upp
+++ WCOSS2.env[18]: export 'launcher=mpiexec -l'
+++ WCOSS2.env[18]: launcher='mpiexec -l'
+++ WCOSS2.env[19]: export 'mpmd_opt=--cpu-bind verbose,core cfp'
+++ WCOSS2.env[19]: mpmd_opt='--cpu-bind verbose,core cfp'
+++ WCOSS2.env[21]: [[ upp = \p\r\e\p ]]
+++ WCOSS2.env[21]: [[ upp = \p\r\e\p\b\u\f\r ]]
+++ WCOSS2.env[30]: [[ upp = \p\r\e\p\s\n\o\w\o\b\s ]]
+++ WCOSS2.env[34]: [[ upp = \p\r\e\p\_\e\m\i\s\s\i\o\n\s ]]
+++ WCOSS2.env[38]: [[ upp = \w\a\v\e\i\n\i\t ]]
+++ WCOSS2.env[38]: [[ upp = \w\a\v\e\p\r\e\p ]]
+++ WCOSS2.env[38]: [[ upp = \w\a\v\e\p\o\s\t\s\b\s ]]
+++ WCOSS2.env[38]: [[ upp = \w\a\v\e\p\o\s\t\b\n\d\p\n\t ]]
+++ WCOSS2.env[38]: [[ upp = \w\a\v\e\p\o\s\t\b\n\d\p\n\t\b\l\l ]]
+++ WCOSS2.env[38]: [[ upp = \w\a\v\e\p\o\s\t\p\n\t ]]
+++ WCOSS2.env[45]: [[ upp = \a\t\m\a\n\l\v\a\r ]]
+++ WCOSS2.env[53]: [[ upp = \a\t\m\e\n\s\a\n\l\l\e\t\k\f ]]
+++ WCOSS2.env[61]: [[ upp = \a\t\m\e\n\s\a\n\l\f\v\3\i\n\c ]]
+++ WCOSS2.env[69]: [[ upp = \a\e\r\o\a\n\l\r\u\n ]]
+++ WCOSS2.env[79]: [[ upp = \s\n\o\w\a\n\l ]]
+++ WCOSS2.env[89]: [[ upp = \a\t\m\a\n\l\f\v\3\i\n\c ]]
+++ WCOSS2.env[97]: [[ upp = \a\n\a\l ]]
+++ WCOSS2.env[97]: [[ upp = \a\n\a\l\c\a\l\c ]]
+++ WCOSS2.env[134]: [[ upp = \s\f\c\a\n\l ]]
+++ WCOSS2.env[143]: [[ upp = \e\o\b\s ]]
+++ WCOSS2.env[159]: [[ upp = \e\u\p\d ]]
+++ WCOSS2.env[176]: [[ upp = \f\c\s\t ]]
+++ WCOSS2.env[176]: [[ upp = \e\f\c\s ]]
+++ WCOSS2.env[203]: [[ upp = \u\p\p ]]
+++ WCOSS2.env[205]: nth_max=1
+++ WCOSS2.env[207]: export NTHREADS_UPP=1
+++ WCOSS2.env[207]: NTHREADS_UPP=1
+++ WCOSS2.env[208]: [[ 1 -gt 1 ]]
+++ WCOSS2.env[209]: export 'APRUN_UPP=mpiexec -l -n 96 -ppn 96 --cpu-bind depth --depth 1'
+++ WCOSS2.env[209]: APRUN_UPP='mpiexec -l -n 96 -ppn 96 --cpu-bind depth --depth 1'
++ jjob_header.sh[111]: status=0
++ jjob_header.sh[112]: (( status != 0 ))
+ JGLOBAL_ATMOS_UPP[15]: YMD=20211221
+ JGLOBAL_ATMOS_UPP[15]: HH=00
+ JGLOBAL_ATMOS_UPP[15]: declare_from_tmpl -rx COM_ATMOS_ANALYSIS COM_ATMOS_HISTORY COM_ATMOS_MASTER
+ bash_utils.sh[35]: [[ NO == \N\O ]]
+ bash_utils.sh[35]: set +x
declare_from_tmpl :: COM_ATMOS_ANALYSIS=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//analysis/atmos
declare_from_tmpl :: COM_ATMOS_HISTORY=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history
declare_from_tmpl :: COM_ATMOS_MASTER=/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master
+ JGLOBAL_ATMOS_UPP[16]: [[ ! -d /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master ]]
+ JGLOBAL_ATMOS_UPP[22]: /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts/exglobal_atmos_upp.py
2024-06-06 07:30:39,083 - INFO - root : BEGIN: __main__.main
2024-06-06 07:30:39,083 - DEBUG - root : ( )
2024-06-06 07:30:39,092 - INFO - upp : BEGIN: UPP.__init__
2024-06-06 07:30:39,092 - DEBUG - upp : ( <pygfs.task.upp.UPP object at 0x150ee6ebe790>, {'envir': 'prod', 'FRAC_GRID': True, 'waveGRD': 'uglo_100km', 'CRAY_LMOD_MPI': 'cray-mpich/8.0', 'G2TMPL_LIB': '/apps/ops/prod/libs/intel/19.1.3.304/g2tmpl/1.10.2/lib/libg2tmpl.a', 'INCVARS_ZERO_STRAT': "'sphum_inc','liq_wat_inc','icmr_inc','rwmr_inc','snmr_inc','grle_inc'", 'LMOD_FAMILY_CRAYPE_NETWORK_VERSION': False, 'COM_SNOW_ANALYSIS_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow', 'PBS_ENVIRONMENT': 'PBS_BATCH', 'LD_LIBRARY_PATH': '/apps/spack/python/3.8.6/intel/19.1.3.304/pjn2nzkjvqgmjw4hmyz43v5x4jbxjzpk/lib:/apps/spack/libjpeg/9c/intel/19.1.3.304/jkr3isi257ktoouprwaxcn4twtye747z/lib:/apps/spack/zlib/1.2.11/intel/19.1.3.304/hjotqkckeoyt6j6tibalwzrlfljcjtdh/lib:/apps/spack/libpng/1.6.37/intel/19.1.3.304/4ohkronuhlyherusoszzrmur5ewvlwzh/lib:/apps/spack/jasper/2.0.25/intel/19.1.3.304/sjib74krrorkyczqpqah4tvewmlnqdx4/lib64:/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/netcdf/4.7.4/lib:/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/hdf5/1.10.6/lib:/pe/intel/compilers_and_libraries_2020.4.304/linux/compiler/lib/intel64_lin:/pe/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/lib/release:/pe/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/lib:/pe/intel/compilers_and_libraries_2020.4.304/linux/ipp/lib/intel64:/pe/intel/compilers_and_libraries_2020.4.304/linux/mkl/lib/intel64_lin:/pe/intel/compilers_and_libraries_2020.4.304/linux/tbb/lib/intel64/gcc4.8:/pe/intel/debugger_2020/python/intel64/lib:/pe/intel/debugger_2020/libipt/intel64/lib:/opt/cray/libfabric/1.11.0.0./lib64', 'sp_ROOT': '/apps/ops/prod/libs/intel/19.1.3.304/sp/2.3.3', 'HOSTTYPE': 'x86_64', 'g2_VERSION': '3.4.5', 'npe_upp': 96, 'LMOD_CUSTOM_PATHS': 'CNCM/apps/ops/prod/libs/modulefiles/mpi/intel/19.1.3.304/cray-mpich/8.1.4:CNCM/apps/prod/lmodules/INTEL_cray_mpich/19.1.3.304/cray-mpich/8.1.4:COMPILER/apps/ops/prod/nco/modulefiles/compiler/intel/19.1.3.304:COMPILER/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304:COMPILER/apps/prod/lmodules/intel/19.1.3.304', 'AERO_ANL_CDUMP': '', 'SENDDBN_NTC': False, 'COM_ATMOS_RADMON_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/radmon', 'COM_ICE_GRIB_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2', 'PBS_O_LANG': 'en_US.UTF-8', 'Z_LIB': '/apps/spack/zlib/1.2.11/intel/19.1.3.304/hjotqkckeoyt6j6tibalwzrlfljcjtdh/lib/libz.a', 'ROTDIR_DUMP': True, 'COMINnam': '/lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/nam', '_ModuleTable017_': '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', 'WRITE_DOPOST': True, 'JPEG_VER': '9c', '__LMOD_REF_COUNT_PATH': '/apps/spack/python/3.8.6/intel/19.1.3.304/pjn2nzkjvqgmjw4hmyz43v5x4jbxjzpk/bin:1;/apps/ops/prod/libs/intel/19.1.3.304/wgrib2/2.0.8/bin:1;/apps/ops/prod/libs/intel/19.1.3.304/grib_util/1.2.3/bin:1;/apps/spack/libjpeg/9c/intel/19.1.3.304/jkr3isi257ktoouprwaxcn4twtye747z/bin:1;/apps/prod/cfp/2.0.4/intel/19.1.3.304/bin:1;/opt/cray/pe/pals/1.2.2/bin:1;/apps/ops/prod/nco/core/prod_util.v2.0.14/ush:1;/apps/ops/prod/libs/intel/19.1.3.304/cray-mpich/8.1.4/nemsio/2.5.2/bin:1;/apps/spack/libpng/1.6.37/intel/19.1.3.304/4ohkronuhlyherusoszzrmur5ewvlwzh/bin:1;/apps/spack/jasper/2.0.25/intel/19.1.3.304/sjib74krrorkyczqpqah4tvewmlnqdx4/bin:1;/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/netcdf/4.7.4/bin:1;/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/hdf5/1.10.6/bin:1;/opt/cray/pe/craype/2.7.10/bin:1;/pe/intel/compilers_and_libraries_2020.4.304/linux/bin/intel64:1;/pe/intel/compilers_and_libraries_2020.4.304/linux/bin:1;/pe/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin:1;/pe/intel/debugger_2020/gdb/intel64/bin:1;/opt/cray/libfabric/1.11.0.0./bin:1;/u/terry.mcguinness/.local/bin:1;/u/terry.mcguinness/bin:2;/usr/local/bin:1;/usr/bin:1;/bin:2;/opt/pbs/bin:1;/sbin:1;.:1;/lfs/h2/emc/global/noscrub/terry.mcguinness/scripts:1;/opt/cray/pe/bin:1;/apps/prod/python-modules/3.8.6/intel/19.1.3.304/bin:1;/apps/prod/python-modules/3.8.6/intel/19.1.3.304/lib/python3.8/site-packages/bin:1', '_ModuleTable002_': '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', 'RUN': 'gfs', 'INCLUDE': '/apps/spack/python/3.8.6/intel/19.1.3.304/pjn2nzkjvqgmjw4hmyz43v5x4jbxjzpk/include:/apps/spack/libjpeg/9c/intel/19.1.3.304/jkr3isi257ktoouprwaxcn4twtye747z/include:/apps/spack/zlib/1.2.11/intel/19.1.3.304/hjotqkckeoyt6j6tibalwzrlfljcjtdh/include:/apps/spack/libpng/1.6.37/intel/19.1.3.304/4ohkronuhlyherusoszzrmur5ewvlwzh/include:/apps/spack/jasper/2.0.25/intel/19.1.3.304/sjib74krrorkyczqpqah4tvewmlnqdx4/include', 'LESSCLOSE': 'lessclose.sh %s %s', 'ARCH_WARMICFREQ': 4, 'CRAY_LD_LIBRARY_PATH': '/opt/cray/pe/mpich/8.1.9/ofi/intel/19.0/lib', '__LMOD_REF_COUNT_DYLD_LIBRARY_PATH': '/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/netcdf/4.7.4/lib:1;/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/hdf5/1.10.6/lib:1', 'CRTM_FIX': '/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix', 'COM_RTOFS_TMPL': '${DMPDIR}', 'XKEYSYMDB': '/usr/X11R6/lib/X11/XKeysymDB', 'PE_ENV': 'INTEL', 'COM_ATMOS_GRIB_GRID_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2/${GRID}', '__LMOD_REF_COUNT_C_INCLUDE_PATH': '/apps/spack/python/3.8.6/intel/19.1.3.304/pjn2nzkjvqgmjw4hmyz43v5x4jbxjzpk/include:1;/apps/spack/libjpeg/9c/intel/19.1.3.304/jkr3isi257ktoouprwaxcn4twtye747z/include:1;/apps/spack/zlib/1.2.11/intel/19.1.3.304/hjotqkckeoyt6j6tibalwzrlfljcjtdh/include:1;/apps/spack/libpng/1.6.37/intel/19.1.3.304/4ohkronuhlyherusoszzrmur5ewvlwzh/include:1;/apps/spack/jasper/2.0.25/intel/19.1.3.304/sjib74krrorkyczqpqah4tvewmlnqdx4/include:1', '__LMOD_REF_COUNT_PE_FORTRAN_PKGCONFIG_LIBS': 'mpichf90:1', 'LMOD_FAMILY_CRAYPE_CPU': 'craype-x86-rome', 'NUM_SND_COLLECTIVES': 9, 'CRAY_LMOD_COMPILER': 'intel/19.0', 'COM_ATMOS_HISTORY': '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history', 'PSLOT': 'C96_atm3DVar_extended_9b290b28', 'LMOD_MODULERCFILE': '/apps/prod/lmodules/.modulerc.lua', 'QUEUE': 'dev', 'DOIAU': True, 'PACKAGEROOT': '/lfs/h1/ops/prod/packages', 'PE_PRODUCT_LIST': 'CRAYPE:CRAYPE_X86_ROME', 'LMOD_IGNORE_CACHE': True, 'NDATE': '/apps/ops/prod/nco/core/prod_util.v2.0.14/exec/ndate', 'COM_ICE_RESTART_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ice/restart', 'JASPER_LIB': '/apps/spack/jasper/2.0.25/intel/19.1.3.304/sjib74krrorkyczqpqah4tvewmlnqdx4/lib64/libjasper.a', 'LMOD_FAMILY_MPI_VERSION': '8.1.9', 'PE_PERFTOOLS_MPICH_LIBDIR': '/opt/cray/pe/mpich/8.1.9/ofi/intel/19.0/lib', 'ARCH_CYC': 0, 'PE_MPICH_GTL_DIR_amd_gfx906': '-L/opt/cray/pe/mpich/8.1.9/gtl/lib', 'EUPD_CYC': 'gdas', 'LANG': 'en_US.UTF-8', 'TZ': 'UTC', 'NetCDF_VERSION': '4.7.4', 'crtm_VERSION': '2.4.0', '_ModuleTable019_': 'bGVzL0lOVEVMX2NyYXlfbXBpY2gvMTkuMS4zLjMwNC9jcmF5LW1waWNoLzguMS40IiwiL29wdC9jcmF5L3BlL2xtb2QvbW9kdWxlZmlsZXMvbXBpL2ludGVsLzE5LjAvb2ZpLzEuMC9jcmF5LW1waWNoLzguMCIsIi9hcHBzL29wcy9wcm9kL25jby9tb2R1bGVmaWxlcy9jb21waWxlci9pbnRlbC8xOS4xLjMuMzA0IiwiL2FwcHMvb3BzL3Byb2QvbGlicy9tb2R1bGVmaWxlcy9jb21waWxlci9pbnRlbC8xOS4xLjMuMzA0IiwiL2FwcHMvcHJvZC9sbW9kdWxlcy9pbnRlbC8xOS4xLjMuMzA0IiwiL29wdC9jcmF5L3BlL2xtb2QvbW9kdWxlZmlsZXMvY29tbmV0L2ludGVsLzE5LjAvb2ZpLzEuMCIsIi9hcHBzL3Byb2QvbG1vZHVsZXMvY29tcGlsZXIvaW50ZWwvMTkuMCIsIi9sZnMv', 'PE_MPICH_GTL_DIR_amd_gfx908': '-L/opt/cray/pe/mpich/8.1.9/gtl/lib', 'COMLOGSROOT': '/lfs/h1/ops/prod/com', 'imp_physics': 8, 'JASPER_LIBDIR': '/apps/spack/jasper/2.0.25/intel/19.1.3.304/sjib74krrorkyczqpqah4tvewmlnqdx4/lib64', 'QUEUE_SERVICE': 'dev_transfer', 'WINDOWMANAGER': 'xterm', 'COM_ICE_NETCDF_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/netcdf', '_ModuleTable008_': 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'/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-x86-rome.lua:/opt/cray/modulefiles/libfabric/1.11.0.0.:/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-network-ofi.lua:/apps/prod/lmodules/sys_core/envvar/1.0:/opt/cray/pe/lmod/modulefiles/core/PrgEnv-intel/8.1.0.lua:/apps/prod/lmodules/core/intel/19.1.3.304.lua:/opt/cray/pe/lmod/modulefiles/core/craype/2.7.10.lua:/opt/cray/pe/lmod/modulefiles/comnet/intel/19.0/ofi/1.0/cray-mpich/8.1.9.lua:/apps/prod/lmodules/INTEL_cray_mpich/19.1.3.304/cray-mpich/8.1.4/hdf5/1.10.6.lua:/apps/prod/lmodules/INTEL_cray_mpich/19.1.3.304/cray-mpich/8.1.4/netcdf/4.7.4.lua:/apps/prod/lmodules/intel/19.1.3.304/jasper/2.0.25:/apps/prod/lmodules/intel/19.1.3.304/libpng/1.6.37:/apps/prod/lmodules/intel/19.1.3.304/zlib/1.2.11:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/g2/3.4.5.lua:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/g2tmpl/1.10.2.lua:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/ip/3.3.3.lua:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/sp/2.3.3.lua:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/w3emc/2.9.2.lua:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/bacio/2.4.1.lua:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/w3nco/2.4.1.lua:/apps/ops/prod/libs/modulefiles/mpi/intel/19.1.3.304/cray-mpich/8.1.4/nemsio/2.5.2.lua:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/sigio/2.3.2.lua:/apps/ops/prod/libs/modulefiles/mpi/intel/19.1.3.304/cray-mpich/8.1.4/wrf_io/1.2.0.lua:/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/sorc/ufs_model.fd/FV3/upp/modulefiles/wcoss2.lua:/apps/ops/prod/nco/modulefiles/core/prod_util/2.0.14:/opt/cray/pe/lmod/modulefiles/core/cray-pals/1.2.2.lua:/apps/prod/lmodules/core/cfp/2.0.4:/apps/prod/lmodules/intel/19.1.3.304/libjpeg/9c:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/grib_util/1.2.3.lua:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/wgrib2/2.0.8.lua:/apps/prod/lmodules/intel/19.1.3.304/python/3.8.6:/apps/ops/prod/libs/modulefiles/compiler/intel/19.1.3.304/crtm/2.4.0.lua', 'BACIO_LIB4': '/apps/ops/prod/libs/intel/19.1.3.304/bacio/2.4.1/lib/libbacio_4.a', 'NetCDF_LIBRARIES': '/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/netcdf/4.7.4/lib', 'COMDATEROOT': '/lfs/h1/ops/prod/com', 'GSI_SOILANAL': False, 'EXECgfs': '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/exec', 'cycle': 't00z', 'HDF5_VERSION': '1.10.6', 'w3emc_ROOT': '/apps/ops/prod/libs/intel/19.1.3.304/w3emc/2.9.2', 'LEVS': 128, 'pgmerr': 'errfile', 'PS4': '+ $(basename ${BASH_SOURCE[0]:-${FUNCNAME[0]:-"Unknown"}})[${LINENO}]: ', 'BACIO_LIB8': '/apps/ops/prod/libs/intel/19.1.3.304/bacio/2.4.1/lib/libbacio_8.a', 'BASE_GIT': '/lfs/h2/emc/global/save/emc.global/git', 'PBS_QUEUE': 'dev', 'MODULESHOME': '/usr/share/lmod/lmod', 'nemsio_ROOT': '/apps/ops/prod/libs/intel/19.1.3.304/cray-mpich/8.1.4/nemsio/2.5.2', 'LMOD_SETTARG_FULL_SUPPORT': False, 'PKG_CONFIG_PATH': '/apps/spack/python/3.8.6/intel/19.1.3.304/pjn2nzkjvqgmjw4hmyz43v5x4jbxjzpk/lib/pkgconfig:/apps/spack/libjpeg/9c/intel/19.1.3.304/jkr3isi257ktoouprwaxcn4twtye747z/lib/pkgconfig:/apps/spack/zlib/1.2.11/intel/19.1.3.304/hjotqkckeoyt6j6tibalwzrlfljcjtdh/lib/pkgconfig:/apps/spack/libpng/1.6.37/intel/19.1.3.304/4ohkronuhlyherusoszzrmur5ewvlwzh/lib/pkgconfig:/apps/spack/jasper/2.0.25/intel/19.1.3.304/sjib74krrorkyczqpqah4tvewmlnqdx4/lib64/pkgconfig:/opt/cray/pe/craype/2.7.10/pkg-config:/pe/intel/compilers_and_libraries_2020.4.304/linux/mkl/bin/pkgconfig:/opt/cray/libfabric/1.11.0.0./lib64/pkgconfig', 'INFOPATH': '/pe/intel/documentation_2020/en/debugger/gdb-ia/info::/apps/docs/info', 'G_BROKEN_FILENAMES': 1, 'COM_ATMOS_GENESIS_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital', 'I_MPI_ROOT': '/pe/intel/compilers_and_libraries_2020.4.304/linux/mpi', '_ModuleTable011_': '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', 'IAUFHRS_ENKF': 6, 'LIBPNG_SRC': '/apps/spack/libpng/1.6.37/intel/19.1.3.304/4ohkronuhlyherusoszzrmur5ewvlwzh/src', 'W3NCO_LIB8': '/apps/ops/prod/libs/intel/19.1.3.304/w3nco/2.4.1/lib/libw3nco_8.a', 'SP_INCd': '/apps/ops/prod/libs/intel/19.1.3.304/sp/2.3.3/include_d', 'DO_VRFY_OCEANDA': False, 'HISTSIZE': 10000, 'CRAYPE_DIR': '/opt/cray/pe/craype/2.7.10', 'INCREMENTS_TO_ZERO': "'liq_wat_inc','icmr_inc','rwmr_inc','snmr_inc','grle_inc'", 'LMOD_PKG': '/usr/share/lmod/lmod', '__LMOD_REF_COUNT_PE_MPICH_PKGCONFIG_LIBS': 'mpich:1', 'W3NCO_LIB4': '/apps/ops/prod/libs/intel/19.1.3.304/w3nco/2.4.1/lib/libw3nco_4.a', 'IAU_OFFSET': 6, 'DO_GENESIS_FSU': False, 'FHMAX_HF_GFS': 0, 'COM_WAVE_STATION_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/station', 'COM_CONF_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/conf', 'CPU': 'x86_64', '__LMOD_REF_COUNT_PE_PKGCONFIG_LIBS': 'mpich:1', 'CRAYPE_VERSION': '2.7.10', 'COM_ATMOS_TRACK_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks', 'NETCDF_LIBRARIES': '/apps/prod/hpc-stack/intel-19.1.3.304/cray-mpich-8.1.4/netcdf/4.7.4/lib', 'PTMP': '/lfs/h2/emc/ptmp/terry.mcguinness', 'FHOUT_HF_WAV': 1, 'NFHRS_PER_GROUP': 3, 'DONST': True, 'LMOD_CMD': '/usr/share/lmod/lmod/libexec/lmod', '_ModuleTable005_': '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', 'DO_AERO': False, 'STMP': '/lfs/h2/emc/stmp/terry.mcguinness', 'CRAY_MPICH_PREFIX': '/opt/cray/pe/mpich/8.1.9/ofi/intel/19.0', 'CHGRP_RSTPROD': True, 'DBNROOT': '/apps/ops/prod/nco/core/prod_util.v2.0.14/fakedbn', 'CVS_RSH': 'ssh', 'WGRIB2': 'wgrib2', 'PBS_O_MAIL': '/var/spool/mail/terry.mcguinness', 'OMP_NUM_THREADS': 1, 'LESSOPEN': 'lessopen.sh %s', '_ModuleTable020_': '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', 'COM_OCEAN_HISTORY_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model_data/ocean/history', 'EXP_WARM_START': False, 'FHMAX_WAV': 9, 'LMOD_DIR': '/usr/share/lmod/lmod/libexec', 'LC_TIME': 'C.UTF-8', 'APRUN_UPP': 'mpiexec -l -n 96 -ppn 96 --cpu-bind depth --depth 1', 'SCRgfs': '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts', 'LMOD_FAMILY_MPI': 'cray-mpich', 'JPEG_LIB': '/apps/spack/libjpeg/9c/intel/19.1.3.304/jkr3isi257ktoouprwaxcn4twtye747z/lib/libjpeg.a', 'BASH_FUNC_module%%': '() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)\n}', 'BASH_FUNC_declare_from_tmpl%%': '() { if [[ ${DEBUG_WORKFLOW:-"NO"} == "NO" ]]; then\n set +x;\n fi;\n local opts="-g";\n local OPTIND=1;\n while getopts "rx" option; do\n opts="${opts}${option}";\n done;\n shift $((OPTIND-1));\n for input in "$@";\n do\n IFS=\':\' read -ra args <<< "${input}";\n local com_var="${args[0]}";\n local template;\n local value;\n if (( ${#args[@]} > 1 )); then\n template="${args[1]}";\n else\n template="${com_var}_TMPL";\n fi;\n if [[ ! -v "${template}" ]]; then\n echo "FATAL ERROR in declare_from_tmpl: Requested template ${template} not defined!";\n exit 2;\n fi;\n value=$(echo "${!template}" | envsubst);\n declare ${opts} "${com_var}"="${value}";\n echo "declare_from_tmpl :: ${com_var}=${value}";\n done;\n set_trace\n}', 'BASH_FUNC_wait_for_file%%': '() { set +x;\n local file_name=${1:?"wait_for_file() requires a file name"};\n local sleep_interval=${2:-60};\n local max_tries=${3:-100};\n for ((iter=0; iter<max_tries; iter++ ))\n do\n if [[ -r ${file_name} ]]; then\n set_trace;\n return 0;\n fi;\n sleep "${sleep_interval}";\n done;\n set_trace;\n return 1\n}', 'BASH_FUNC_ml%%': '() { eval $($LMOD_DIR/ml_cmd "$@")\n}', '_': '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts/exglobal_atmos_upp.py'} )
2024-06-06 07:30:39,094 - DEBUG - task : Deleting runtime_key PDY from config
2024-06-06 07:30:39,094 - DEBUG - task : Deleting runtime_key cyc from config
2024-06-06 07:30:39,094 - DEBUG - task : Deleting runtime_key DATA from config
2024-06-06 07:30:39,094 - DEBUG - task : Deleting runtime_key RUN from config
2024-06-06 07:30:39,094 - DEBUG - task : Deleting runtime_key CDUMP from config
2024-06-06 07:30:39,094 - DEBUG - task : current cycle: 2021-12-21 00:00:00
2024-06-06 07:30:39,094 - DEBUG - task : previous cycle: 2021-12-20 18:00:00
2024-06-06 07:30:39,096 - INFO - upp : Read the UPP configuration yaml file /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/upp.yaml
2024-06-06 07:30:39,186 - DEBUG - upp : upp_yaml:
{'analysis': {'config': {'rdaod': True},
'data_in': {'copy': [['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/postxconfig-NT-GFS-ANL.txt',
'/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/postxconfig-NT.txt'],
['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//analysis/atmos/gfs.t00z.atmanl.nc',
'/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/atm_20211221090000.nc'],
['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//analysis/atmos/gfs.t00z.sfcanl.nc',
'/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/sfc_20211221090000.nc']]},
'data_out': {'copy': [['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF00',
'/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2anl'],
['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF00.idx',
'/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2ianl']]}},
'forecast': {'config': {'rdaod': True},
'data_in': {'copy': [['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/postxconfig-NT-GFS-TWO.txt',
'/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/postxconfig-NT.txt'],
['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf009.nc',
'/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/atm_20211221090000.nc'],
['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.sfcf009.nc',
'/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/sfc_20211221090000.nc']]},
'data_out': {'copy': [['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09',
'/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2f009'],
['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSFLX.GrbF09',
'/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.sfluxgrbf009.grib2'],
['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09.idx',
'/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2if009'],
['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSFLX.GrbF09.idx',
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'upp': {'config': {'grib_version': 'grib2',
'ioform': 'netcdfpara',
'po': [1000.0,
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7.0,
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3.0,
2.0,
1.0,
0.7,
0.4,
0.2,
0.1,
0.07,
0.04,
0.02,
0.01],
'rdaod': False},
'fix_data': {'copy': [['/apps/ops/prod/libs/intel/19.1.3.304/g2tmpl/1.10.2/share/params_grib2_tbl_new',
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['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/exec/upp.x',
'/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'],
['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/itag.jinja',
'/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/']],
'mkdir': ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811']}}}
2024-06-06 07:30:39,186 - INFO - upp : END: UPP.__init__
2024-06-06 07:30:39,186 - DEBUG - upp : returning: None
2024-06-06 07:30:39,186 - INFO - upp : BEGIN: pygfs.task.upp.initialize
2024-06-06 07:30:39,187 - DEBUG - upp : ( {'upp': {'config': {'grib_version': 'grib2', 'ioform': 'netcdfpara', 'po': [1000.0, 975.0, 950.0, 925.0, 900.0, 875.0, 850.0, 825.0, 800.0, 775.0, 750.0, 725.0, 700.0, 675.0, 650.0, 625.0, 600.0, 575.0, 550.0, 525.0, 500.0, 475.0, 450.0, 425.0, 400.0, 375.0, 350.0, 325.0, 300.0, 275.0, 250.0, 225.0, 200.0, 175.0, 150.0, 125.0, 100.0, 70.0, 50.0, 40.0, 30.0, 20.0, 15.0, 10.0, 7.0, 5.0, 3.0, 2.0, 1.0, 0.7, 0.4, 0.2, 0.1, 0.07, 0.04, 0.02, 0.01], 'rdaod': False}, 'fix_data': {'mkdir': ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811'], 'copy': [['/apps/ops/prod/libs/intel/19.1.3.304/g2tmpl/1.10.2/share/params_grib2_tbl_new', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/params_grib2_tbl_new'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/nam_micro_lookup.dat', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/eta_micro_lookup.dat'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/exec/upp.x', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/itag.jinja', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/']]}}, 'analysis': {'config': {'rdaod': True}, 'data_in': {'copy': [['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/postxconfig-NT-GFS-ANL.txt', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/postxconfig-NT.txt'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//analysis/atmos/gfs.t00z.atmanl.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/atm_20211221090000.nc'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//analysis/atmos/gfs.t00z.sfcanl.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/sfc_20211221090000.nc']]}, 'data_out': {'copy': [['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF00', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2anl'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF00.idx', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2ianl']]}}, 'forecast': {'config': {'rdaod': True}, 'data_in': {'copy': [['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/postxconfig-NT-GFS-TWO.txt', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/postxconfig-NT.txt'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf009.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/atm_20211221090000.nc'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.sfcf009.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/sfc_20211221090000.nc']]}, 'data_out': {'copy': [['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2f009'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSFLX.GrbF09', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.sfluxgrbf009.grib2'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09.idx', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2if009'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSFLX.GrbF09.idx', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.sfluxgrbf009.grib2.idx']]}}, 'goes': {'config': {'rdaod': False}, 'data_in': {'copy': [['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/amsre_aqua.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/amsre_aqua.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g11.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g11.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g12.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g12.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g13.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g13.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g15.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g15.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt1r.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt1r.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt2.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt2.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_insat3d.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_insat3d.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/seviri_m10.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/seviri_m10.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f13.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f13.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f14.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f14.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f15.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f15.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f16.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f16.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f17.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f17.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f18.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f18.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f19.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f19.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f20.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f20.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/tmi_trmm.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/tmi_trmm.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/abi_gr.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/abi_gr.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ahi_himawari8.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ahi_himawari8.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/v.seviri_m10.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/FASTEM4.MWwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/FASTEM5.MWwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/FASTEM6.MWwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/IGBP.IRland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/IGBP.VISland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/Nalli.IRwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.IRice.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.IRland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.IRsnow.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISice.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISsnow.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/USGS.IRland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/USGS.VISland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/WuSmith.IRwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/AerosolCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/CloudCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/postxconfig-NT-GFS-GOES.txt', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/postxconfig-NT.txt'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf009.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/atm_20211221090000.nc'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.sfcf009.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/sfc_20211221090000.nc']]}, 'data_out': {'copy': [['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.special.grb2f009'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09.idx', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.special.grb2if009']]}}} )
2024-06-06 07:30:39,187 - INFO - upp : Copy static data to run directory
2024-06-06 07:30:39,187 - INFO - file_utils : Created /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811
2024-06-06 07:30:39,211 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/g2tmpl/1.10.2/share/params_grib2_tbl_new to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/params_grib2_tbl_new
2024-06-06 07:30:39,293 - INFO - file_utils : Copied /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/nam_micro_lookup.dat to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/eta_micro_lookup.dat
2024-06-06 07:30:39,527 - INFO - file_utils : Copied /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/exec/upp.x to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,531 - INFO - file_utils : Copied /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/itag.jinja to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,531 - INFO - upp : END: pygfs.task.upp.initialize
2024-06-06 07:30:39,531 - DEBUG - upp : returning: None
2024-06-06 07:30:39,531 - INFO - upp : BEGIN: pygfs.task.upp.configure
2024-06-06 07:30:39,531 - DEBUG - upp : ( {'HOMEgfs': '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow', 'DATA': '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811', 'current_cycle': datetime.datetime(2021, 12, 21, 0, 0), 'RUN': 'gfs', 'NET': 'gfs', 'COM_ATMOS_ANALYSIS': '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//analysis/atmos', 'COM_ATMOS_HISTORY': '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history', 'COM_ATMOS_MASTER': '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master', 'upp_run': 'goes', 'APRUN_UPP': 'mpiexec -l -n 96 -ppn 96 --cpu-bind depth --depth 1', 'forecast_hour': 9, 'valid_datetime': datetime.datetime(2021, 12, 21, 9, 0), 'atmos_filename': 'atm_20211221090000.nc', 'flux_filename': 'sfc_20211221090000.nc'}, {'upp': {'config': {'grib_version': 'grib2', 'ioform': 'netcdfpara', 'po': [1000.0, 975.0, 950.0, 925.0, 900.0, 875.0, 850.0, 825.0, 800.0, 775.0, 750.0, 725.0, 700.0, 675.0, 650.0, 625.0, 600.0, 575.0, 550.0, 525.0, 500.0, 475.0, 450.0, 425.0, 400.0, 375.0, 350.0, 325.0, 300.0, 275.0, 250.0, 225.0, 200.0, 175.0, 150.0, 125.0, 100.0, 70.0, 50.0, 40.0, 30.0, 20.0, 15.0, 10.0, 7.0, 5.0, 3.0, 2.0, 1.0, 0.7, 0.4, 0.2, 0.1, 0.07, 0.04, 0.02, 0.01], 'rdaod': False}, 'fix_data': {'mkdir': ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811'], 'copy': [['/apps/ops/prod/libs/intel/19.1.3.304/g2tmpl/1.10.2/share/params_grib2_tbl_new', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/params_grib2_tbl_new'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/nam_micro_lookup.dat', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/eta_micro_lookup.dat'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/exec/upp.x', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/itag.jinja', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/']]}}, 'analysis': {'config': {'rdaod': True}, 'data_in': {'copy': [['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/postxconfig-NT-GFS-ANL.txt', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/postxconfig-NT.txt'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//analysis/atmos/gfs.t00z.atmanl.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/atm_20211221090000.nc'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//analysis/atmos/gfs.t00z.sfcanl.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/sfc_20211221090000.nc']]}, 'data_out': {'copy': [['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF00', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2anl'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF00.idx', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2ianl']]}}, 'forecast': {'config': {'rdaod': True}, 'data_in': {'copy': [['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/postxconfig-NT-GFS-TWO.txt', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/postxconfig-NT.txt'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf009.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/atm_20211221090000.nc'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.sfcf009.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/sfc_20211221090000.nc']]}, 'data_out': {'copy': [['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2f009'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSFLX.GrbF09', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.sfluxgrbf009.grib2'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09.idx', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.master.grb2if009'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSFLX.GrbF09.idx', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.sfluxgrbf009.grib2.idx']]}}, 'goes': {'config': {'rdaod': False}, 'data_in': {'copy': [['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/amsre_aqua.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/amsre_aqua.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g11.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g11.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g12.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g12.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g13.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g13.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g15.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g15.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt1r.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt1r.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt2.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt2.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_insat3d.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_insat3d.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/seviri_m10.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/seviri_m10.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f13.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f13.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f14.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f14.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f15.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f15.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f16.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f16.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f17.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f17.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f18.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f18.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f19.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f19.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f20.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f20.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/tmi_trmm.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/tmi_trmm.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/abi_gr.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/abi_gr.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ahi_himawari8.TauCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ahi_himawari8.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/v.seviri_m10.SpcCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/FASTEM4.MWwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/FASTEM5.MWwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/FASTEM6.MWwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/IGBP.IRland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/IGBP.VISland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/Nalli.IRwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.IRice.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.IRland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.IRsnow.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISice.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISsnow.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/USGS.IRland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/USGS.VISland.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/WuSmith.IRwater.EmisCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/AerosolCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/CloudCoeff.bin', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/postxconfig-NT-GFS-GOES.txt', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/postxconfig-NT.txt'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf009.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/atm_20211221090000.nc'], ['/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.sfcf009.nc', '/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/sfc_20211221090000.nc']]}, 'data_out': {'copy': [['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.special.grb2f009'], ['/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/GFSPRS.GrbF09.idx', '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/master/gfs.t00z.special.grb2if009']]}}} )
2024-06-06 07:30:39,531 - INFO - upp : Copy 'goes' data to run directory
2024-06-06 07:30:39,539 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/amsre_aqua.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,542 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/amsre_aqua.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,569 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g11.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,572 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g11.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,597 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g12.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,605 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g12.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,609 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g13.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,613 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g13.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,636 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g15.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,640 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_g15.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,654 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt1r.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,657 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt1r.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,661 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt2.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,665 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_mt2.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,669 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_insat3d.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,672 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/imgr_insat3d.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,675 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/seviri_m10.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,679 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/seviri_m10.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,739 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f13.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,811 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f13.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,815 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f14.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,898 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f14.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,902 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f15.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,906 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmi_f15.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,910 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f16.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,913 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f16.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,918 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f17.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,922 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f17.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,927 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f18.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,930 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f18.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,933 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f19.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,937 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f19.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,941 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f20.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,945 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ssmis_f20.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,975 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/tmi_trmm.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,978 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/tmi_trmm.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,981 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/abi_gr.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,985 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/abi_gr.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,988 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ahi_himawari8.TauCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,991 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/ahi_himawari8.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:39,995 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/v.seviri_m10.SpcCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,449 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/FASTEM4.MWwater.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,454 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/FASTEM5.MWwater.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,457 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/FASTEM6.MWwater.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,460 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/IGBP.IRland.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,464 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/IGBP.VISland.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,542 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/Nalli.IRwater.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,545 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.IRice.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,549 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.IRland.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,582 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.IRsnow.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,585 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISice.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,589 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISland.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,593 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISsnow.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,656 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/NPOESS.VISwater.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,659 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/USGS.IRland.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,663 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/USGS.VISland.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,671 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/WuSmith.IRwater.EmisCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,689 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/AerosolCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,697 - INFO - file_utils : Copied /apps/ops/prod/libs/intel/19.1.3.304/crtm/2.4.0/fix/CloudCoeff.bin to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/
2024-06-06 07:30:40,701 - INFO - file_utils : Copied /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/parm/post/postxconfig-NT-GFS-GOES.txt to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/postxconfig-NT.txt
Traceback (most recent call last):
File "/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python/wxflow/fsutils.py", line 85, in cp
shutil.copy2(source, target)
File "/apps/spack/python/3.8.6/intel/19.1.3.304/pjn2nzkjvqgmjw4hmyz43v5x4jbxjzpk/lib/python3.8/shutil.py", line 432, in copy2
copyfile(src, dst, follow_symlinks=follow_symlinks)
File "/apps/spack/python/3.8.6/intel/19.1.3.304/pjn2nzkjvqgmjw4hmyz43v5x4jbxjzpk/lib/python3.8/shutil.py", line 261, in copyfile
with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst:
FileNotFoundError: [Errno 2] No such file or directory: '/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf009.nc'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts/exglobal_atmos_upp.py", line 48, in <module>
main()
File "/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python/wxflow/logger.py", line 266, in wrapper
retval = func(*args, **kwargs)
File "/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/scripts/exglobal_atmos_upp.py", line 38, in main
upp.configure(upp_dict, upp_yaml)
File "/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python/wxflow/logger.py", line 266, in wrapper
retval = func(*args, **kwargs)
File "/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python/pygfs/task/upp.py", line 103, in configure
FileHandler(upp_yaml[upp_dict.upp_run].data_in).sync()
File "/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python/wxflow/file_utils.py", line 43, in sync
sync_factory[action](files)
File "/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python/wxflow/file_utils.py", line 63, in _copy_files
cp(src, dest)
File "/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/ush/python/wxflow/fsutils.py", line 87, in cp
raise OSError(f"unable to copy {source} to {target}")
OSError: unable to copy /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/gfs.20211221/00//model_data/atmos/history/gfs.t00z.atmf009.nc to /lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28/upp.206811/atm_20211221090000.nc
+ JGLOBAL_ATMOS_UPP[1]: postamble JGLOBAL_ATMOS_UPP 1717659034 1
+ preamble.sh[70]: set +x
End JGLOBAL_ATMOS_UPP at 07:30:40 with error code 1 (time elapsed: 00:00:06)
+ upp.sh[1]: postamble upp.sh 1717659030 1
+ preamble.sh[70]: set +x
End upp.sh at 07:30:40 with error code 1 (time elapsed: 00:00:10)
PBS: Running epilogue on parent mom node: nid001395...
##### Job 134425900.cbqs01 - PBS Job Script:
(Note: Duplicate #PBS entries are a function how PBS interprets and caches the original job script.)
#! /bin/sh
#PBS -N C96_atm3DVar_extended_9b290b28_gfsgoesupp_f009-f015_00
#PBS -A GFS-DEV
#PBS -q dev
#PBS -l walltime=00:15:00
#PBS -l select=1:mpiprocs=96:ompthreads=1:ncpus=96
#PBS -j oe -o /lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT/C96_atm3DVar_extended_9b290b28/logs/2021122100/gfsgoesupp_f009-f015.log
#PBS -l place=vscatter:exclhost
export RUN_ENVIR='emc'
export HOMEgfs='/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow'
export EXPDIR='/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/EXPDIR/C96_atm3DVar_extended_9b290b28'
export NET='gfs'
export CDUMP='gfs'
export RUN='gfs'
export CDATE='2021122100'
export PDY='20211221'
export cyc='00'
export COMROOT='/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/RUNTESTS/COMROOT'
export DATAROOT='/lfs/h2/emc/stmp/terry.mcguinness/RUNDIRS/C96_atm3DVar_extended_9b290b28'
export FHRLST='f009_f012_f015'
export UPP_RUN='goes'
set -x
/lfs/h2/emc/global/noscrub/globalworkflow.ci/GFS_CI_ROOT/PR/2649/global-workflow/jobs/rocoto/upp.sh
##### End of job script
------------------------------------------------------------------
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