Created
October 3, 2013 19:53
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#IOOS #wakari installation log (with warnings & errors) for pyoos installation attempt on wakari custom environment, with paegan 1.0 already installed. The fatal error involved Fiona and its dependence on GDAL, which is not installed on the environment. The reliance on a fixed beautifulsoup4 version is a smaller issue, but also important. From 1…
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| 10/3/2013, on Wakari | |
| [~]$ pip install pyoos > pip_install_pyoos_1.log | |
| -------------------------------------- | |
| *** Fatal error message, not captured in the log file | |
| Traceback (most recent call last): | |
| File "/opt/anaconda/envs/ioos_em_2/bin/pip", line 6, in <module> | |
| sys.exit(main()) | |
| File "/opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages/pip/__init__.py", line 161, in main | |
| return command.main(args[1:], options) | |
| File "/opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages/pip/basecommand.py", line 169, in main | |
| text = '\n'.join(complete_log) | |
| UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 37: ordinal not in range(128) | |
| -------------------------------------- | |
| *** Content of pip_install_pyoos_1.log: | |
| Requirement already satisfied (use --upgrade to upgrade): pyoos in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages | |
| Requirement already satisfied (use --upgrade to upgrade): paegan>=0.9.9 in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from pyoos) | |
| Requirement already satisfied (use --upgrade to upgrade): OWSLib>=0.8-dev in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from pyoos) | |
| Requirement already satisfied (use --upgrade to upgrade): requests in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from pyoos) | |
| Downloading/unpacking Fiona==0.16.1 (from pyoos) | |
| Running setup.py egg_info for package Fiona | |
| WARNING:root:Failed to get options via gdal-config: [Errno 2] No such file or directory | |
| Downloading/unpacking beautifulsoup4==4.2.1 (from pyoos) | |
| You are installing an externally hosted file. Future versions of pip will default to disallowing externally hosted files. | |
| Running setup.py egg_info for package beautifulsoup4 | |
| Requirement already satisfied (use --upgrade to upgrade): lxml>=3.2.0 in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from pyoos) | |
| Requirement already satisfied (use --upgrade to upgrade): numpy>=1.7.0 in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from paegan>=0.9.9->pyoos) | |
| Requirement already satisfied (use --upgrade to upgrade): scipy in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from paegan>=0.9.9->pyoos) | |
| Requirement already satisfied (use --upgrade to upgrade): netCDF4>=1.0.2 in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from paegan>=0.9.9->pyoos) | |
| Requirement already satisfied (use --upgrade to upgrade): Shapely>=1.2.15 in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from paegan>=0.9.9->pyoos) | |
| Requirement already satisfied (use --upgrade to upgrade): pytz in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from paegan>=0.9.9->pyoos) | |
| Requirement already satisfied (use --upgrade to upgrade): python-dateutil>=1.5 in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from paegan>=0.9.9->pyoos) | |
| Requirement already satisfied (use --upgrade to upgrade): six in /opt/anaconda/envs/ioos_em_2/lib/python2.7/site-packages (from Fiona==0.16.1->pyoos) | |
| Installing collected packages: Fiona, beautifulsoup4 | |
| Running setup.py install for Fiona | |
| WARNING:root:Failed to get options via gdal-config: [Errno 2] No such file or directory | |
| building 'fiona.ogrinit' extension | |
| gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/anaconda/envs/ioos_em_2/include/python2.7 -c src/fiona/ogrinit.c -o build/temp.linux-x86_64-2.7/src/fiona/ogrinit.o | |
| src/fiona/ogrinit.c:300:23: error: cpl_error.h: No such file or directory | |
| src/fiona/ogrinit.c:301:21: error: ogr_api.h: No such file or directory | |
| src/fiona/ogrinit.c: In function ‘__pyx_pf_5fiona_7ogrinit_setup’: | |
| src/fiona/ogrinit.c:799: warning: implicit declaration of function ‘CPLSetErrorHandler’ | |
| src/fiona/ogrinit.c:808: warning: implicit declaration of function ‘OGRRegisterAll’ | |
| src/fiona/ogrinit.c: In function ‘__pyx_pf_5fiona_7ogrinit_2cleanup’: | |
| src/fiona/ogrinit.c:848: warning: implicit declaration of function ‘OGRCleanupAll’ | |
| error: command 'gcc' failed with exit status 1 | |
| Complete output from command /opt/anaconda/envs/ioos_em_2/bin/python -c "import setuptools;__file__='/tmp/pip_build_w_emayorga/Fiona/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-wlMxnT-record/install-record.txt --single-version-externally-managed: | |
| WARNING:root:Failed to get options via gdal-config: [Errno 2] No such file or directory | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib.linux-x86_64-2.7 | |
| creating build/lib.linux-x86_64-2.7/fiona | |
| copying src/fiona/ogropts.py -> build/lib.linux-x86_64-2.7/fiona | |
| copying src/fiona/tool.py -> build/lib.linux-x86_64-2.7/fiona | |
| copying src/fiona/errors.py -> build/lib.linux-x86_64-2.7/fiona | |
| copying src/fiona/rfc3339.py -> build/lib.linux-x86_64-2.7/fiona | |
| copying src/fiona/crs.py -> build/lib.linux-x86_64-2.7/fiona | |
| copying src/fiona/collection.py -> build/lib.linux-x86_64-2.7/fiona | |
| copying src/fiona/__init__.py -> build/lib.linux-x86_64-2.7/fiona | |
| copying src/fiona/this_bis.py -> build/lib.linux-x86_64-2.7/fiona | |
| running build_ext | |
| building 'fiona.ogrinit' extension | |
| creating build/temp.linux-x86_64-2.7 | |
| creating build/temp.linux-x86_64-2.7/src | |
| creating build/temp.linux-x86_64-2.7/src/fiona | |
| gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/anaconda/envs/ioos_em_2/include/python2.7 -c src/fiona/ogrinit.c -o build/temp.linux-x86_64-2.7/src/fiona/ogrinit.o | |
| src/fiona/ogrinit.c:300:23: error: cpl_error.h: No such file or directory | |
| src/fiona/ogrinit.c:301:21: error: ogr_api.h: No such file or directory | |
| src/fiona/ogrinit.c: In function ‘__pyx_pf_5fiona_7ogrinit_setup’: | |
| src/fiona/ogrinit.c:799: warning: implicit declaration of function ‘CPLSetErrorHandler’ | |
| src/fiona/ogrinit.c:808: warning: implicit declaration of function ‘OGRRegisterAll’ | |
| src/fiona/ogrinit.c: In function ‘__pyx_pf_5fiona_7ogrinit_2cleanup’: | |
| src/fiona/ogrinit.c:848: warning: implicit declaration of function ‘OGRCleanupAll’ | |
| error: command 'gcc' failed with exit status 1 | |
| ---------------------------------------- | |
| Cleaning up... | |
| Command /opt/anaconda/envs/ioos_em_2/bin/python -c "import setuptools;__file__='/tmp/pip_build_w_emayorga/Fiona/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-wlMxnT-record/install-record.txt --single-version-externally-managed failed with error code 1 in /tmp/pip_build_w_emayorga/Fiona |
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