parade_test.sh

#!/bin/bash
#  ./parade.test number_of_datasets number_of_images /ouput/directory /where/is/your/OMERO -s omero.server.address -u user.name -w password

NUMBER_OF_DATASETS=$1
NUMBER_OF_IMAGES=$2
OUTPUT_DIR=$3
OMERO_HOME=$4
OMERO_ARGUMENTS="${@:5}"

PROJECT_NAME="Parade.Test"
DATASET_PREFIX="Dataset_"
IMAGE_PREFIX="Image_"
IMAGE_SETTINGS="pixelType=uint8&sizeX=1280&sizeY=1280"
OMERO="${OMERO_HOME}/bin/omero"

${OMERO} login ${OMERO_ARGUMENTS}

OMERO_PROJECT_ID=$( \
    ${OMERO} ${OMERO_ARGUMENTS} \
    obj new Project "name=${PROJECT_NAME}" \
    | cut -d ':' -f 2)

echo "Created ${PROJECT_NAME}:${OMERO_PROJECT_ID}"
for i in $(seq 1 ${NUMBER_OF_DATASETS});
do
    DATASET_NAME="${DATASET_PREFIX}$i"
    echo "Creating ${DATASET_NAME}"
    # create dataset
    OMERO_DATASET_ID=$( \
        ${OMERO} ${OMERO_ARGUMENTS} \
        obj new Dataset "name=${DATASET_NAME}" \
        | cut -d ':' -f 2)
    # link dataset to project
    ${OMERO} ${OMERO_ARGUMENTS} \
        obj new ProjectDatasetLink \
        parent=Project:${OMERO_PROJECT_ID} child=Dataset:${OMERO_DATASET_ID}

    # create dataset dir
    DATASET_PATH="${OUTPUT_DIR}/${DATASET_NAME}"
    mkdir ${DATASET_PATH}
    for j in $(seq 1 ${NUMBER_OF_IMAGES});
    do
        IMAGE_NAME="${IMAGE_PREFIX}$i.$j&${IMAGE_SETTINGS}.fake"
        echo "    Creating ${IMAGE_NAME}"
        IMAGE_PATH="${DATASET_PATH}/${IMAGE_NAME}"
        touch ${IMAGE_PATH}
    done
    ${OMERO} ${OMERO_ARGUMENTS} import -d ${OMERO_DATASET_ID} ${DATASET_PATH}
done