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Erik Volz emvolz
emvolz
/ BiSSE_coalescent.R
Created
January 14, 2020 18:13
#' This script simulates genealogies for a "Binary state speciation and extinction model" (BiSSE) #' Trees are simulated using a structured coalescent framework implemented in the phydynR package #' In this model, a wild type mutates at a constant rate to the mutant type which has lower transmission fitness.
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| #' This script simulates genealogies for a "Binary state speciation and extinction model" (BiSSE) | |
| #' Trees are simulated using a structured coalescent framework implemented in the phydynR package | |
| #' In this model, a wild type mutates at a constant rate to the mutant type which has lower transmission fitness. | |
| #' | |
| #' @author Erik M Volz <erik.volz@gmail.com> | |
| #' @date 14 January 2020 | |
| library( phydynR ) | |
| library( ape ) | |
| library( ggtree ) |
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