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Created January 31, 2021 14:42
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install htslib with docker
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Dockerfile
# Install htslib (for bgzip)
RUN mkdir /opt/htslib
RUN curl -L https://github.com/samtools/htslib/releases/download/1.11/htslib-1.11.tar.bz2 --out htslib-1.11.tar.bz2 && \
tar -xf htslib-1.11.tar.bz2 && \
cd htslib-1.11 && \
./configure --disable-bz2 --disable-lzma --prefix=/opt/htslib/ && \
make && \
make install
ENV PATH="${PATH}:/opt/htslib/bin"
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