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epifanio/Join_dataframes.ipynb

Created November 14, 2019 12:45
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names_check.ipynb
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Check a list of species against the species list"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
"import pandas as pd"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"from fuzzyutil import *"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Import list"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [],
"source": [
"# find this file in your archives\n",
"# df = pd.read_csv('../../Nextcloud/Work/Data delivery/names_2018data.csv', encoding='latin1', sep=';')"
]
},
{
"cell_type": "code",
"execution_count": 10,
"metadata": {},
"outputs": [],
"source": [
"df = pd.read_csv('names_v5.csv', encoding='latin1')"
]
},
{
"cell_type": "code",
"execution_count": 11,
"metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
"<style scoped>\n",
" .dataframe tbody tr th:only-of-type {\n",
" vertical-align: middle;\n",
" }\n",
"\n",
" .dataframe tbody tr th {\n",
" vertical-align: top;\n",
" }\n",
"\n",
" .dataframe thead th {\n",
" text-align: right;\n",
" }\n",
"</style>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>Unnamed: 0</th>\n",
" <th>Species</th>\n",
" <th>To_name</th>\n",
" <th>Status</th>\n",
" <th>Species_original</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>1</td>\n",
" <td>Acesta</td>\n",
" <td>Acesta excavata</td>\n",
" <td>True</td>\n",
" <td>Acesta</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>2</td>\n",
" <td>Actini stilk</td>\n",
" <td>NaN</td>\n",
" <td>False</td>\n",
" <td>Actini stilk</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
" <td>3</td>\n",
" <td>Actiniaria</td>\n",
" <td>NaN</td>\n",
" <td>False</td>\n",
" <td>Actiniaria</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
" <td>4</td>\n",
" <td>Actiniaria buried</td>\n",
" <td>NaN</td>\n",
" <td>False</td>\n",
" <td>Actiniaria buried</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
" <td>5</td>\n",
" <td>Actiniaria dark</td>\n",
" <td>NaN</td>\n",
" <td>False</td>\n",
" <td>Actiniaria dark</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>"
],
"text/plain": [
" Unnamed: 0 Species To_name Status Species_original\n",
"0 1 Acesta Acesta excavata True Acesta\n",
"1 2 Actini stilk NaN False Actini stilk\n",
"2 3 Actiniaria NaN False Actiniaria\n",
"3 4 Actiniaria buried NaN False Actiniaria buried\n",
"4 5 Actiniaria dark NaN False Actiniaria dark"
]
},
"execution_count": 11,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"df.head(5)"
]
},
{
"cell_type": "code",
"execution_count": 12,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"3311"
]
},
"execution_count": 12,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"len(df)"
]
},
{
"cell_type": "code",
"execution_count": 13,
"metadata": {},
"outputs": [],
"source": [
"names = df['Species']"
]
},
{
"cell_type": "code",
"execution_count": 14,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"3311"
]
},
"execution_count": 14,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"len(names)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Import \"Species list\""
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Look here: https://prosjektrom.imr.no/10944-mareano-video/Artsliste/species%20list%20mai%202018.txt"
]
},
{
"cell_type": "code",
"execution_count": 15,
"metadata": {},
"outputs": [],
"source": [
"sl = pd.read_csv(\"species list mai 2018.txt\", header=None)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Make a header"
]
},
{
"cell_type": "code",
"execution_count": 16,
"metadata": {},
"outputs": [],
"source": [
"sl.columns = ['names']"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Strip names of their modifier"
]
},
{
"cell_type": "code",
"execution_count": 17,
"metadata": {},
"outputs": [],
"source": [
"sl['stripped_names'] = sl['names'].str.split(';').str[0]"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Convert to list"
]
},
{
"cell_type": "code",
"execution_count": 18,
"metadata": {},
"outputs": [],
"source": [
"slist = sl['stripped_names'].tolist()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Check"
]
},
{
"cell_type": "code",
"execution_count": 19,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"[['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria buried', 'Actiniaria buried', 100],\n",
" ['Actiniaria buried', 'Actiniaria buried', 100],\n",
" ['Actiniaria red', 'Actiniaria buried', 90],\n",
" ['Actiniaria red', 'Actiniaria buried', 90],\n",
" ['Actiniaria small', 'Actiniaria small', 100],\n",
" ['Actiniaria small', 'Actiniaria small', 100],\n",
" ['Actiniaria small pink', 'Actiniaria small', 86],\n",
" ['Actiniaria small pink', 'Actiniaria small', 86],\n",
" ['Actiniaria small red', 'Actiniaria small', 89],\n",
" ['Actiniaria small red', 'Actiniaria small', 89],\n",
" ['Actiniaria yellow stolon', 'Actiniaria yellow stolon', 100],\n",
" ['Amblyraja hyperborea', 'Amblyraja hyperborea', 100],\n",
" ['Amphipoda', 'Amphipoda', 100],\n",
" ['Amphipoda', 'Amphipoda', 100],\n",
" ['Amphipoda', 'Amphipoda', 100],\n",
" ['Amphipoda', 'Amphipoda', 100],\n",
" ['Aplysilla sulfurea', 'Aplysilla sulfurea', 100],\n",
" ['Ascidia mentula', 'Ascidia mentula', 100],\n",
" ['Ascidia virginea', 'Ascidia virginea', 100],\n",
" ['Ascidiacea colon', 'Ascidiacea colonial', 91],\n",
" ['Ascidiacea colonial', 'Ascidiacea colonial', 100],\n",
" ['Ascidiacea colonial', 'Ascidiacea colonial erect', 86],\n",
" ['Ascidiacea solit', 'Ascidiacea solitary', 91],\n",
" ['Ascidiacea solitary', 'Ascidiacea solitary', 100],\n",
" ['Ascidiacea solitary', 'Ascidiacea solitary big', 90],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteronyx loveni', 'Asteronyx loveni', 100],\n",
" ['Axinellidae', 'Axinellidae', 100],\n",
" ['Bacteria mat', 'Bacterial mat', 96],\n",
" ['Bivalvia', 'Bivalvia', 100],\n",
" ['Brachiopoda', 'Brachiopoda', 100],\n",
" ['Brachyura', 'Brachyura', 100],\n",
" ['Brosme brosme', 'Brosme brosme', 100],\n",
" ['Bryozoa branched', 'Bryozoa soft branched', 86],\n",
" ['Bryozoa encrusting', 'Bryozoa encrusting', 100],\n",
" ['Buccinidae', 'Buccinidae', 100],\n",
" ['Burrow', 'Burrow', 100],\n",
" ['Burrow', 'Burrow', 100],\n",
" ['Burrow', 'Burrow', 100],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Bythocaris', 'Bythocaris sp.', 87],\n",
" ['Candelabrum', 'Candelabrum sp.', 88],\n",
" ['Caridea', 'Caridea', 100],\n",
" ['Cerianthidae', 'Cerianthidae', 100],\n",
" ['Cerianthidae', 'Cerianthidae', 100],\n",
" ['Cerianthidae', 'Cerianthidae', 100],\n",
" ['Chondrocladia', 'Chondrocladia sp.', 90],\n",
" ['Corymorpha', 'Corymorpha sp.', 87],\n",
" ['Corymorpha sandy stalk', 'Corymorpha sand stolon', 86],\n",
" ['Coryphaenoides rupestris', 'Coryphaenoides rupestris', 100],\n",
" ['Cottidae', 'Cottidae', 100],\n",
" ['Cottunculus microps', 'Cottunculus microps', 100],\n",
" ['Craniella zetlandica', 'Craniella zetlandica', 100],\n",
" ['Crossaster', 'Crossaster sp.', 87],\n",
" ['Duva flori', 'Duva florida', 91],\n",
" ['Echinoidea irregular', 'Echinoidea regular', 95],\n",
" ['Echinoidea regular', 'Echinoidea regular', 100],\n",
" ['Echinus esculentus', 'Echinus esculentus', 100],\n",
" ['Epizoanthidae', 'Zoanthidae', 87],\n",
" ['Gadidae', 'Gadidae', 100],\n",
" ['Gadus morhua', 'Gadus morhua', 100],\n",
" ['Gaidropsarus argentatus', 'Gaidropsarus argentatus', 100],\n",
" ['Galatheidae', 'Galatheoidea', 87],\n",
" ['Geodia atlantica', 'Geodia atlantica', 100],\n",
" ['Geodia baretti', 'Geodia barretti', 97],\n",
" ['Geodia cf atlantica', 'Geodia atlantica', 91],\n",
" ['Geodia macandrewi', 'Geodia macandrewii', 97],\n",
" ['Gorgonocephalus', 'Gorgonocephalus sp.', 91],\n",
" ['Hexactinellida', 'Hexactinellida', 100],\n",
" ['Hexactinellida', 'Hexactinellida', 100],\n",
" ['Hexactinellida', 'Hexactinellida', 100],\n",
" ['Hexactinellida', 'Hexactinellida', 100],\n",
" ['Hexactinellida', 'Hexactinellida', 100],\n",
" ['Hexactinellida', 'Hexactinellida', 100],\n",
" ['Hexactinellida branched', 'Hexactinellida thin branched', 90],\n",
" ['Hexactinellida fan shaped', 'Hexactinellida fan shaped', 100],\n",
" ['Hexactinellida thin branched', 'Hexactinellida thin branched', 100],\n",
" ['Hippoglossus hippoglossus', 'Hippoglossus hippoglossus', 100],\n",
" ['Holothuroidea', 'Holothuroidea', 100],\n",
" ['Hormatidae', 'Hormathiidae', 91],\n",
" ['Hyalonema', 'Hyalonema sp.', 86],\n",
" ['Hydroides norvegica', 'Hydroides norvegicus', 92],\n",
" ['Hydrozoa bush', 'Hydrozoa bush', 100],\n",
" ['Isopoda', 'Isopoda', 100],\n",
" ['Lithodes maja', 'Lithodes maja', 100],\n",
" ['Lithodidae', 'Lithodidae', 100],\n",
" ['Lithothamnion', 'Lithothamnion sp.', 90],\n",
" ['litter', 'Litter', 100],\n",
" ['litter', 'Litter', 100],\n",
" ['litter', 'Litter', 100],\n",
" ['litter', 'Litter', 100],\n",
" ['litter', 'Litter', 100],\n",
" ['litter', 'Litter', 100],\n",
" ['litter', 'Litter', 100],\n",
" ['litter', 'Litter', 100],\n",
" ['litter', 'Litter', 100],\n",
" ['litter', 'Litter', 100],\n",
" ['Lophelia pertusa', 'Lophelia pertusa', 100],\n",
" ['Lucernaria bathyphilia', 'Lucernaria bathyphila', 98],\n",
" ['Lumpenidae', 'Lumpeninae', 90],\n",
" ['Lycodes esmarkii', 'Lycodes esmarkii', 100],\n",
" ['Lycodes frigidus', 'Lycodes frigidus', 100],\n",
" ['Macrouridae', 'Macrouridae', 100],\n",
" ['Macrouridae cf', 'Macrouridae', 88],\n",
" ['Macrourus berglax', 'Macrourus berglax', 100],\n",
" ['Melanogrammus aeglefinus', 'Melanogrammus aeglefinus', 100],\n",
" ['Microstomus', 'Microstomus sp.', 88],\n",
" ['Munnopsidae', 'Munnopsidae', 100],\n",
" ['Nephtheidae', 'Nephtheidae', 100],\n",
" ['Nudibranchiata', 'Nudibranchia', 92],\n",
" ['Octocorallia', 'Octocorallia', 100],\n",
" ['Ophiuroidea', 'Ophiuroidea', 100],\n",
" ['Paguridae', 'Paguridae', 100],\n",
" ['Pandalidae', 'Pandalidae', 100],\n",
" ['Paragorgia arborea', 'Paragorgia arborea', 100],\n",
" ['Paragorgia arborea', 'Paragorgia arborea', 100],\n",
" ['Paragorgia arborea', 'Paragorgia arborea', 100],\n",
" ['Paragorgia arborea', 'Paragorgia arborea', 100],\n",
" ['Paraliparis bathybius', 'Paraliparis bathybius', 100],\n",
" ['Pectenidae', 'Pectinidae', 90],\n",
" ['Pennatula', 'Pennatulacea', 86],\n",
" ['Pennatulacea', 'Pennatulacea', 100],\n",
" ['Peracarida', 'Peracarida', 100],\n",
" ['Phakellia', 'Phakellia sp.', 86],\n",
" ['Pleuronectidae', 'Pleuronectidae', 100],\n",
" ['Pleuronectidae', 'Pleuronectidae', 100],\n",
" ['Pleuronectiformes', 'Pleuronectiformes', 100],\n",
" ['Pollachius virens', 'Pollachius virens', 100],\n",
" ['Polychaeta errantia', 'Polychaeta errantia', 100],\n",
" ['Polychaeta tube', 'Polychatea tube', 93],\n",
" ['Polymastia', 'Polymastia sp.', 87],\n",
" ['Polymastia', 'Polymastiidae', 87],\n",
" ['Polynoidae', 'Polynoidae', 100],\n",
" ['Poranidae', 'Poraniidae', 95],\n",
" ['Porifera bat', 'Porifera bat', 100],\n",
" ['Porifera big', 'Porifera big', 100],\n",
" ['Porifera branched', 'Porifera branched', 100],\n",
" ['Porifera dirty-yellow', 'Porifera dirty yellow', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera fan', 'Porifera fan', 100],\n",
" ['Porifera fan', 'Porifera fan', 100],\n",
" ['Porifera fan', 'Porifera fan', 100],\n",
" ['Porifera fan', 'Porifera fan', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small round', 'Porifera small round', 100],\n",
" ['Porifera stalk', 'Porifera small', 86],\n",
" ['Porifera stalk', 'Porifera small', 86],\n",
" ['Porifera stalk', 'Porifera small', 86],\n",
" ['Porifera stalk', 'Porifera small', 86],\n",
" ['Porifera stalk', 'Porifera small', 86],\n",
" ['Porifera stalk', 'Porifera small', 86],\n",
" ['Primnoa resedaeformis', 'Primnoa resedaeformis', 100],\n",
" ['Protanthea simplex', 'Protanthea simplex', 100],\n",
" ['Pteraster', 'Pteraster sp.', 86],\n",
" ['Pycnogonida', 'Pycnogonida', 100],\n",
" ['Radicipes', 'Radicipes sp.', 86],\n",
" ['Rajella fyllae', 'Rajella fyllae', 100],\n",
" ['Reinhardtius hippoglossoides', 'Reinhardtius hippoglossoides', 100],\n",
" ['Rhodichthys regina', 'Rhodichthys regina', 100],\n",
" ['Sabellidae', 'Sabellidae', 100],\n",
" ['Scophthalmidae', 'Scophthalmidae', 100],\n",
" ['Sebastes viviparus', 'Sebastes viviparus', 100],\n",
" ['Serpulidae', 'Serpulidae', 100],\n",
" ['Spatangoidae', 'Spatangoida', 96],\n",
" ['Spatangus purpureus', 'Spatangus purpureus', 100],\n",
" ['Stylasteridae', 'Stylasteridae', 100],\n",
" ['Teleostei', 'Teleostei', 100],\n",
" ['Tethya citrina', 'Tethya citrina', 100],\n",
" ['Thenea abyss', 'Thenea abyssorum', 86],\n",
" ['Trisopterus', 'Trisopterus sp.', 88],\n",
" ['Trisopterus esmarki', 'Trisopterus esmarkii', 97],\n",
" ['Tubularia indivisa', 'Tubularia indivisa', 100],\n",
" ['Tubularia', 'Tubularia sp.', 86],\n",
" ['Tubularia', 'Tubulariidae', 86],\n",
" ['Zooanthidae', 'Zoanthidae', 95],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Hormathiidae', 'Hormathiidae', 100],\n",
" ['Liponema multicorne', 'Liponema multicorne', 100],\n",
" ['Pandalus borealis', 'Pandalus borealis', 100],\n",
" ['Trawl mark', 'Trawl mark', 100],\n",
" ['Trawl mark', 'Trawl mark', 100],\n",
" ['Trawl mark', 'Trawl mark', 100],\n",
" ['Trawl mark', 'Trawl mark', 100],\n",
" ['Actinostola callosa', 'Actinostola callosa', 100],\n",
" ['Hormathia nodosa', 'Hormathia nodosa', 100],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Bolocera tuediae', 'Bolocera tuediae', 100],\n",
" ['Bryozoa coral', 'Bryozoa coral', 100],\n",
" ['Poraniidae', 'Poraniidae', 100],\n",
" ['Porigera egg', 'Porifera egg', 92],\n",
" ['Porifera egg', 'Porifera egg', 100],\n",
" ['Stylocordyla borealis', 'Stylocordyla borealis', 100],\n",
" ['Urasterias lincki', 'Urasterias lincki', 100],\n",
" ['Candelabrum', 'Candelabrum sp.', 88],\n",
" ['Lumpeninae', 'Lumpeninae', 100],\n",
" ['Rajiformes', 'Rajiformes', 100],\n",
" ['Corymorpha glacialis', 'Corymorpha glacialis', 100],\n",
" ['Lebensspuren tracks', 'Lebensspuren tracks', 100],\n",
" ['Phakellia', 'Phakellia sp.', 86],\n",
" ['Spiochaetopterus tubes', 'Spiochaetopterus tubes', 100],\n",
" ['Corymorpha', 'Corymorpha sp.', 87],\n",
" ['Nemertea', 'Nemertea', 100],\n",
" ['Porifera big white', 'Porifera white bush', 86],\n",
" ['Spiochartopterus tubes', 'Spiochaetopterus tubes', 95],\n",
" ['Spipchaetopterus tubes', 'Spiochaetopterus tubes', 95],\n",
" ['Tubulariidae', 'Tubulariidae', 100],\n",
" ['Pteraster', 'Pteraster sp.', 86],\n",
" ['Liponema mulitcorne', 'Liponema multicorne', 95],\n",
" ['Mycale lingua', 'Mycale lingua', 100],\n",
" ['Polymastia', 'Polymastia sp.', 87],\n",
" ['Polymastia', 'Polymastiidae', 87],\n",
" ['Stryphnus ponderosus', 'Stryphnus ponderosus', 100],\n",
" ['Spiochateopterus tubes', 'Spiochaetopterus tubes', 95],\n",
" ['Urasterias Lincki', 'Urasterias lincki', 100],\n",
" ['Antho dichotoma cf', 'Antho dichotoma', 91],\n",
" ['Urasterias licki', 'Urasterias lincki', 97],\n",
" ['Anarhichas denticulatus', 'Anarhichas denticulatus', 100],\n",
" ['Lycodonus/Lycenchelys/Lumpenus', 'Lycodonus/Lycenchelys/Lumpenus', 100],\n",
" ['Myxine glutinosa', 'Myxine glutinosa', 100],\n",
" ['Axinella infundibuliformis', 'Axinella infundibuliformis', 100],\n",
" ['Filograna implexa', 'Filograna implexa', 100],\n",
" ['Porifera lily', 'Porifera lily', 100],\n",
" ['Amblyraja radiata', 'Amblyraja radiata', 100],\n",
" ['Hydrozoa tree', 'Hydrozoa tree', 100],\n",
" ['Trisopterus', 'Trisopterus sp.', 88],\n",
" ['Lumpeninae cf', 'Lumpeninae', 87],\n",
" ['Pectinidae', 'Pectinariidae', 87],\n",
" ['Pectinidae', 'Pectinidae', 100],\n",
" ['porifera string', 'Porifera string', 100],\n",
" ['Porifera string', 'Porifera string', 100],\n",
" ['Porifera small white round', 'Porifera small round', 87],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Bryozoa calcareous branched', 'Bryozoa calcareous branched', 100],\n",
" ['Hippasteria phrygiana', 'Hippasteria phrygiana', 100],\n",
" ['Scalpellidae', 'Caprellidae', 87],\n",
" ['Scalpellidae', 'Scalpellidae', 100],\n",
" ['Stauromedusae', 'Stauromedusae', 100],\n",
" ['Polymastiidae', 'Polymastiidae', 100],\n",
" ['Poraniomorpha', 'Poraniomorpha sp.', 90],\n",
" ['Asbestopluma pennatula', 'Asbestopluma pennatula', 100],\n",
" ['Ceramaster granularis', 'Ceramaster granularis', 100],\n",
" ['Hormathia', 'Hormathia sp.', 86],\n",
" ['Hormathia', 'Hormathiidae', 86],\n",
" ['Tubularia', 'Tubularia sp.', 86],\n",
" ['Tubularia', 'Tubulariidae', 86],\n",
" ['Bourgueticrinina', 'Bourgueticrinina', 100],\n",
" ['Lebensspuren feces', 'Lebensspuren feces', 100],\n",
" ['Hippoglossoides platessoides', 'Hippoglossoides platessoides', 100],\n",
" ['Hormathia digitata', 'Hormathia digitata', 100],\n",
" ['Hormathia', 'Hormathia sp.', 86],\n",
" ['Hormathia', 'Hormathiidae', 86],\n",
" ['Porianidae', 'Poraniidae', 90],\n",
" ['Seaweed fragments', 'Seaweed fragments', 100],\n",
" ['Actiniaria red', 'Actiniaria buried', 90],\n",
" ['Actiniaria red', 'Actiniaria buried', 90],\n",
" ['Zoanthidae', 'Zoanthidae', 100],\n",
" ['Ctenodiscus crispatus', 'Ctenodiscus crispatus', 100],\n",
" ['Amblyraja', 'Amblyraja sp.', 86],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Burrow small', 'Burrows small', 96],\n",
" ['Lebensspuren feces mound', 'Lebensspuren feces', 86],\n",
" ['Hymedesmia paupertas', 'Hymedesmia paupertas', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Porifera small round', 'Porifera small round', 100],\n",
" ['Hormathia', 'Hormathia sp.', 86],\n",
" ['Hormathia', 'Hormathiidae', 86],\n",
" ['Corymorpha nutans', 'Corymorpha nutans', 100],\n",
" ['Porifera window', 'Porifera window', 100],\n",
" ['Crossaster papposus', 'Crossaster papposus', 100],\n",
" ['pandalus borealis', 'Pandalus borealis', 100],\n",
" ['Pandalius borealis', 'Pandalus borealis', 97],\n",
" ['Thenea abyssorum', 'Thenea abyssorum', 100],\n",
" ['Porifera medium', 'Porifera medium', 100],\n",
" ['Porifera medium', 'Porifera medium', 100],\n",
" ['Porifera medium', 'Porifera medium', 100],\n",
" ['Antho dichotoma', 'Antho dichotoma', 100],\n",
" ['Anarhichas minor', 'Anarhichas minor', 100],\n",
" ['Chionoecetes opilio', 'Chionoecetes opilio', 100],\n",
" ['Antedonoidea', 'Antedonoidea', 100],\n",
" ['Pandalus boralis', 'Pandalus borealis', 97],\n",
" ['Porifera dirty yellow', 'Porifera dirty yellow', 100],\n",
" ['Virgularia mirabilis', 'Virgularia mirabilis', 100],\n",
" ['Spatangoida', 'Spatangoida', 100],\n",
" ['Trisopterus', 'Trisopterus sp.', 88],\n",
" ['Funiculina quadrangularis', 'Funiculina quadrangularis', 100],\n",
" ['Lebensspuren bulldosing by echinoderms',\n",
" 'Lebensspuren bulldosing by echinoderms',\n",
" 100],\n",
" ['Leptychaster arcticus', 'Leptychaster arcticus', 100],\n",
" ['Stylocordyla borealis cf', 'Stylocordyla borealis', 93],\n",
" ['Gadiculus argenteus', 'Gadiculus argenteus', 100],\n",
" ['Sclerocrangon', 'Sclerocrangon sp.', 90],\n",
" ['Parastichopus tremulus', 'Parastichopus tremulus', 100],\n",
" ['Kinetoskias smitti', 'Kinetoskias smitti', 100],\n",
" ['Aphroditidae', 'Aphroditidae', 100],\n",
" ['Horneridae', 'Horneridae', 100],\n",
" ['Asconema setubalense', 'Asconema setubalense', 100],\n",
" ['Brachiopoda', 'Brachiopoda', 100],\n",
" ['Geodia barretti', 'Geodia barretti', 100],\n",
" ['Gracilechinus acutus', 'Gracilechinus acutus', 100],\n",
" ['Glyptocephalus cynoglossus', 'Glyptoceophalus cynoglossus', 98],\n",
" ['Quasillina', 'Quasillina sp.', 87],\n",
" ['Stichastrella rosea', 'Stichastrella rosea', 100],\n",
" ['Fungiacyathus fragilis', 'Fungiacyathus fragilis', 100],\n",
" ['Porifera coral', 'Porifera coral', 100],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Porifera encrustingpink', 'Porifera encrusting', 90],\n",
" ['Paralithodes camtschaticus', 'Paralithodes camtschaticus', 100],\n",
" ['Porifera cupcake', 'Porifera cupcake', 100],\n",
" ['Mellonympha mortenseni', 'Mellonympha mortenseni', 100],\n",
" ['Bryozoa calcareous branched', 'Bryozoa calcareous branched', 100],\n",
" ['Drifa glomerata', 'Drifa glomerata', 100],\n",
" ['Porifera medium', 'Porifera medium', 100],\n",
" ['Porifera medium', 'Porifera medium', 100],\n",
" ['Porifera medium', 'Porifera medium', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Stelletta', 'Stelletta sp.', 86],\n",
" ['Duva florida', 'Duva florida', 100],\n",
" ['Geodia macandrewii', 'Geodia macandrewii', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Actiniaria small pale', 'Actiniaria small', 86],\n",
" ['Actiniaria small pale', 'Actiniaria small', 86],\n",
" ['Nemertesia antennina', 'Nemertesia antennina', 100],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Myctophidae', 'Myctophidae', 100],\n",
" ['Foraminifera agglutinated', 'Foraminifera agglutinated', 100],\n",
" ['Neohela cave', 'Neohela cave', 100],\n",
" ['Kukenthalia borealis', 'Kukenthalia borealis', 100],\n",
" ['Bonelliidae', 'Bonelliidae', 100],\n",
" ['Reteporella beaniana', 'Reteporella beaniana', 100],\n",
" ['Rhabdammina', 'Rhabdammina sp.', 88],\n",
" ['Porifera dirty yellow', 'Porifera dirty yellow', 100],\n",
" ['Pelosina arborescens', 'Pelosina arborescens', 100],\n",
" ['Polymastia penicillus', 'Polymastia penicillus', 100],\n",
" ['Porifera fan small', 'Porifera small', 88],\n",
" ['Porifera fan small', 'Porifera small', 88],\n",
" ['Porifera fan small', 'Porifera small', 88],\n",
" ['Porifera fan small', 'Porifera small', 88],\n",
" ['Porifera fan small', 'Porifera small', 88],\n",
" ['Porifera fan small', 'Porifera small', 88],\n",
" ['Ditrupa arietina', 'Ditrupa arietina', 100],\n",
" ['Mysidae', 'Mysidae', 100],\n",
" ['Bryozoa calcareous branched Percent', 'Bryozoa calcareous branched', 87],\n",
" ['Argentina', 'Argentina sp.', 86],\n",
" ['Maurolicus muelleri', 'Maurolicus muelleri', 100],\n",
" ['Foraminifera agglutinated Percent', 'Foraminifera agglutinated', 86],\n",
" ['Porifera brown papillae', 'Porifera brown papillae', 100],\n",
" ['Gorgonocephalus', 'Gorgonocephalus sp.', 91],\n",
" ['Paragorgia arborea pink', 'Paragorgia arborea', 88],\n",
" ['Paragorgia arborea pink', 'Paragorgia arborea', 88],\n",
" ['Paragorgia arborea pink', 'Paragorgia arborea', 88],\n",
" ['Paragorgia arborea pink', 'Paragorgia arborea', 88],\n",
" ['Paragorgia arborea white', 'Paragorgia arborea', 86],\n",
" ['Paragorgia arborea white', 'Paragorgia arborea', 86],\n",
" ['Paragorgia arborea white', 'Paragorgia arborea', 86],\n",
" ['Paragorgia arborea white', 'Paragorgia arborea', 86],\n",
" ['Diplopteraster multipes', 'Diplopteraster multipes', 100],\n",
" ['Latrunculia', 'Latrunculia sp.', 88],\n",
" ['Corymorpha', 'Corymorpha sp.', 87],\n",
" ['Flustrina', 'Flustrina', 100],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Porifera small', 'Porifera small', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Actiniaria', 'Actiniaria', 100],\n",
" ['Echinoidea regular', 'Echinoidea regular', 100],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting brown', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting peach', 'Porifera encrusting', 86],\n",
" ['Asterias rubens', 'Asterias rubens', 100],\n",
" ['Isodictya palmata', 'Isodictya palmata', 100],\n",
" ['Laminaria', 'Laminaria sp.', 86],\n",
" ['Porifera big', 'Porifera big', 100],\n",
" ['Ditrupa tubes', 'Ditrupa tubes', 100],\n",
" ['Chimaera monstrosa', 'Chimaera monstrosa', 100],\n",
" ['Solaster endeca', 'Solaster endeca', 100],\n",
" ['Unidentified red', 'Unidentified', 86],\n",
" ['Unidentified red', 'Unidentified', 86],\n",
" ['Unidentified red', 'Unidentified', 86],\n",
" ['Unidentified red', 'Unidentified', 86],\n",
" ['Unidentified red', 'Unidentified', 86],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Anarhichas lupus', 'Anarhichas lupus', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Asteroidea', 'Asteroidea', 100],\n",
" ['Ctenophora benthic', 'Ctenophora benthic', 100],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Hymedesmia paupertas', 'Hymedesmia paupertas', 100],\n",
" ['Foraminifera sand amoeba', 'Foraminifera sand amoeba', 100],\n",
" ['Didemnidae', 'Didemnidae', 100],\n",
" ['Psolus phantapus', 'Psolus phantapus', 100],\n",
" ['Leptasterias muelleri', 'Leptasterias muelleri', 100],\n",
" ['Balanoidea', 'Balanoidea', 100],\n",
" ['Dendrobeania', 'Dendrobeania sp.', 89],\n",
" ['Phakellia fragment', 'Phakellia sp. fragment', 92],\n",
" ['Anthomastus', 'Anthomastus sp.', 88],\n",
" ['Bacterial mat', 'Bacterial mat', 100],\n",
" ['Disporella', 'Disporella sp.', 87],\n",
" ['Porifera parabol', 'Porifera parabol', 100],\n",
" ['Lithothamnion', 'Lithothamnion sp.', 90],\n",
" ['Lithothamnion', 'Lithothamnion sp.', 90],\n",
" ['Lithothamnion', 'Lithothamnion sp.', 90],\n",
" ['Novocrania anomala', 'Novocrania anomala', 100],\n",
" ['Pelosina arborescens', 'Pelosina arborescens', 100],\n",
" ['Halcampoides', 'Halcampoides sp.', 89],\n",
" ['Thuiaria thuja', 'Thuiaria thuja', 100],\n",
" ['Porifera medium', 'Porifera medium', 100],\n",
" ['Porifera medium', 'Porifera medium', 100],\n",
" ['Porifera medium', 'Porifera medium', 100],\n",
" ['Porifera urn', 'Porifera urn', 100],\n",
" ['Psolussp', 'Psolus sp.', 94],\n",
" ['psolussp', 'Psolus sp.', 94],\n",
" ['Trisopterus esmarkii', 'Trisopterus esmarkii', 100],\n",
" ['Psolussp', 'Psolus sp.', 94],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting pink', 'Porifera encrusting', 88],\n",
" ['Halcampa arctica', 'Halcampa arctica', 100],\n",
" ['Filograna implexa', 'Filograna implexa', 100],\n",
" ['Leptasterias', 'Leptasterias sp.', 89],\n",
" ['Flabellum macandrewi', 'Flabellum macandrewi', 100],\n",
" ['Epizoanthus', 'Epizoanthus sp.', 88],\n",
" ['Amblyraja', 'Amblyraja sp.', 86],\n",
" ['Dendrobeania', 'Dendrobeania sp.', 89],\n",
" ['Dendrobeania', 'Dendrobeania sp.', 89],\n",
" ['Chelonaplysilla', 'Chelonaplysilla sp.', 91],\n",
" ['Porifera fan big', 'Porifera big', 86],\n",
" ['Porifera fan big', 'Porifera fan', 86],\n",
" ['Porifera fan big', 'Porifera fan', 86],\n",
" ['Porifera fan big', 'Porifera fan', 86],\n",
" ['Porifera fan big', 'Porifera fan', 86],\n",
" ['Molva molva', 'Molva molva', 100],\n",
" ['Polychaeta Sedentaria', 'Polychaeta sedentaria', 100],\n",
" ['Dendrobenania', 'Dendrobeania sp.', 86],\n",
" ['Serpulidae', 'Serpulidae', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['Unidentified', 'Unidentified', 100],\n",
" ['dendrobeania', 'Dendrobeania sp.', 89],\n",
" ['Lycodinae', 'Lycodinae', 100],\n",
" ['Smittina jeffreysi', 'Parasmittina jeffreysi', 90],\n",
" ['Gersemia rubiformis', 'Gersemia rubiformis', 100],\n",
" ['Dendronotus', 'Dendronotus sp.', 88],\n",
" ['Icasterias panopla', 'Icasterias panopla', 100],\n",
" ['Nudibranchia', 'Nudibranchia', 100],\n",
" ['Colossendeis proboscidea', 'Colossendeis proboscidea', 100],\n",
" ['Pontaster tenuispinus', 'Pontaster tenuispinus', 100],\n",
" ['Anarhichas', 'Anarhichas sp.', 87],\n",
" ['Liparidae', 'Liparidae', 100],\n",
" ['Munnopsis typicus', 'Munnopsis typica', 91],\n",
" ['Rhabdammina', 'Rhabdammina sp.', 88],\n",
" ['Similipecten greenlandicus', 'Similipecten greenlandicus', 100],\n",
" ['Myriapora', 'Myriapora sp.', 86],\n",
" ['Myriapora', 'Myriapora sp.', 86],\n",
" ['Pontaster tenuspinus', 'Pontaster tenuispinus', 98],\n",
" ['Dendronotus', 'Dendronotus sp.', 88],\n",
" ['Anarhichas', 'Anarhichas sp.', 87],\n",
" ['Porifera medium whte', 'Porifera medium', 86],\n",
" ['Porifera medium whte', 'Porifera medium', 86],\n",
" ['Porifera medium whte', 'Porifera medium', 86],\n",
" ['Icasterias panopala', 'Icasterias panopla', 97],\n",
" ['Chondrocladia', 'Chondrocladia sp.', 90],\n",
" ['Jeffreysi smittina', 'Parasmittina jeffreysi', 90],\n",
" ['Glyptoceophalus cynoglossus', 'Glyptoceophalus cynoglossus', 100],\n",
" ['Platyhelminthes', 'Platyhelminthes', 100],\n",
" ['Pteraster', 'Pteraster sp.', 86],\n",
" ['Dendronotidae', 'Dendronotidae', 100],\n",
" ['Pectinariidae', 'Pectinariidae', 100],\n",
" ['Pectinariidae', 'Pectinidae', 87],\n",
" ['Munnopsis typica', 'Munnopsis typica', 100],\n",
" ['Polychaeta question mark', 'Polychaeta question mark', 100],\n",
" ['Ophioscolex glacialis', 'Ophioscolex glacialis', 100],\n",
" ['Tubularia', 'Tubularia sp.', 86],\n",
" ['Tubularia', 'Tubulariidae', 86],\n",
" ['Chondrocladia gigantea', 'Chondrocladia gigantea', 100],\n",
" ['Edwardsiidae', 'Edwardsiidae', 100],\n",
" ['Lucernaria bathyphila', 'Lucernaria bathyphila', 100],\n",
" ['Paramuricea placomus', 'Paramuricea placomus', 100],\n",
" ['Ptychogastria polaris', 'Ptychogastria polaris', 100],\n",
" ['Leptagonus decagonus', 'Leptagonus decagonus', 100],\n",
" ['Stichopus tremulus', 'Parastichopus tremulus', 90],\n",
" ['Zoanthidea', 'Zoanthidae', 90],\n",
" ['Acesta excavata', 'Acesta excavata', 100],\n",
" ['Gadhus morhua', 'Gadus morhua', 96],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Burrows (small)', 'Burrows small', 100],\n",
" ['Burrows (small)', 'Burrows small', 100],\n",
" ['Burrows (small)', 'Burrows small', 100],\n",
" ['Burrows (small)', 'Burrows small', 100],\n",
" ['Burrows (small)', 'Burrows small', 100],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Raja fyllae', 'Rajella fyllae', 88],\n",
" ['Porifera round small', 'Porifera small round', 100],\n",
" ['Actinaria red', 'Actiniaria buried', 87],\n",
" ['Actinaria red', 'Actiniaria buried', 87],\n",
" ['Foraminifera (agglutinated)', 'Foraminifera agglutinated', 100],\n",
" ['Mysida', 'Mysidae', 92],\n",
" ['Ophiouridea', 'Ophiuroidea', 91],\n",
" ['porifera bat', 'Porifera bat', 100],\n",
" ['Polychaeta (Errantia)', 'Polychaeta errantia', 100],\n",
" ['Corymorpha nutans cf', 'Corymorpha nutans', 92],\n",
" ['Lycodes gracilis', 'Lycodes gracilis', 100],\n",
" ['Phakellia fragment', 'Phakellia sp. fragment', 92],\n",
" ['Polymastia penicillus cf', 'Polymastia penicillus', 93],\n",
" ['Astropecten irregularis cf', 'Astropecten irregularis', 94],\n",
" ['Paralithodes camtschaticus cf', 'Paralithodes camtschaticus', 95],\n",
" ['Molva molva cf', 'Molva molva', 88],\n",
" ['Polychaeta tube soft', 'Polychaeta soft thin tube', 89],\n",
" ['Porifera small white round', 'Porifera small round', 87],\n",
" ['White dots', 'White dots', 100],\n",
" ['White dots', 'White dots', 100],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting grey', 'Porifera encrusting', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Holothurioidea', 'Holothuroidea', 96],\n",
" ['Latrunculia', 'Latrunculia sp.', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Porifera var small', 'Porifera small', 88],\n",
" ['Asbestopluma pennatula', 'Asbestopluma pennatula', 100],\n",
" ['Pennatula phosphorea', 'Pennatula phosphorea', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Asbestopluma pennatula', 'Asbestopluma pennatula', 100],\n",
" ['Porifera var medium', 'Porifera medium', 88],\n",
" ['Porifera var medium', 'Porifera medium', 88],\n",
" ['Porifera var medium', 'Porifera medium', 88],\n",
" ['Ophiocantidae', 'Ophiacanthidae', 89],\n",
" ['Ophiocantidae', 'Ophiacanthidae', 89],\n",
" ['Paragorgia arborea red', 'Paragorgia arborea', 90],\n",
" ['Paragorgia arborea red', 'Paragorgia arborea', 90],\n",
" ['Paragorgia arborea red', 'Paragorgia arborea', 90],\n",
" ['Paragorgia arborea red', 'Paragorgia arborea', 90],\n",
" ['Phakellia ventilabrum', 'Phakellia ventilabrum', 100],\n",
" ['Polymastia', 'Polymastia sp.', 87],\n",
" ['Polymastia', 'Polymastiidae', 87],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting green', 'Porifera encrusting', 86],\n",
" ['Porifera round small', 'Porifera small round', 100],\n",
" ['Ophiouridea', 'Ophiuroidea', 91],\n",
" ['Protanthea simplex', 'Protanthea simplex', 100],\n",
" ['pandalidae', 'Pandalidae', 100],\n",
" ['Phakellia', 'Phakellia sp.', 86],\n",
" ['Phycis blennoides', 'Phycis blennoides', 100],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting blue', 'Porifera encrusting', 88],\n",
" ['Actiniaria buried pink', 'Actiniaria buried', 87],\n",
" ['Actiniaria buried pink', 'Actiniaria buried', 87],\n",
" ['Hydrozoa three', 'Hydrozoa tree', 96],\n",
" ['Macrourus Berglax', 'Macrourus berglax', 100],\n",
" ['Zooanthidae', 'Zoanthidae', 95],\n",
" ['Argentina', 'Argentina sp.', 86],\n",
" ['Pennatulacea cf', 'Pennatulacea', 89],\n",
" ['Porifera coral', 'Porifera coral', 100],\n",
" ['Porifera coral', 'Porifera coral', 100],\n",
" ['Ophiuridea', 'Ophiuroidea', 95],\n",
" ['Lithodidae?', 'Lithodidae', 100],\n",
" ['Acintiniaria', 'Actiniaria', 91],\n",
" ['Acintiniaria', 'Actiniaria', 91],\n",
" ['Acintiniaria', 'Actiniaria', 91],\n",
" ['Acintiniaria', 'Actiniaria', 91],\n",
" ['Acintiniaria', 'Actiniaria', 91],\n",
" ['Acintiniaria', 'Actiniaria', 91],\n",
" ['Acintiniaria', 'Actiniaria', 91],\n",
" ['Ophiuroidae', 'Ophiuroidea', 91],\n",
" ['Phakellia cf ventilabrum', 'Phakellia ventilabrum', 93],\n",
" ['Drifa ?glomerata', 'Drifa glomerata', 100],\n",
" ['crisidae', 'Crisiidae', 94],\n",
" ['neptheidea', 'Nephtheidae', 86],\n",
" ['Cleippides quadricuspis', 'Cleippides quadricuspis', 100],\n",
" ['Pycnogonidae', 'Pycnogonida', 96],\n",
" ['Polychaeta (tube)', 'Polychatea tube', 93],\n",
" ['gadide', 'Gadidae', 92],\n",
" ['Teleost', 'Teleostei', 88],\n",
" ['asterias rubens', 'Asterias rubens', 100],\n",
" ['Paguridae cf', 'Paguridae', 86],\n",
" ['Porifera grey medium', 'Porifera medium', 86],\n",
" ['Porifera grey medium', 'Porifera medium', 86],\n",
" ['Porifera grey medium', 'Porifera medium', 86],\n",
" ['Filograna implexa', 'Filograna implexa', 100],\n",
" ['Melanogrammus aeglefinus cf', 'Melanogrammus aeglefinus', 94],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['Porifera encrusting', 'Porifera encrusting', 100],\n",
" ['teleost', 'Teleostei', 88],\n",
" ['Burrows', 'Burrow', 92],\n",
" ['Burrows', 'Burrow', 92],\n",
" ['Burrows', 'Burrow', 92],\n",
" ['Crossaster papposus cf', 'Crossaster papposus', 93],\n",
" ['argentina', 'Argentina sp.', 86],\n",
" ['Colossendeis', 'Colossendeis sp.', 89],\n",
" ['Hirudinea', 'Hirudinea', 100],\n",
" ['Asbestopluma pennatula cf', 'Asbestopluma pennatula', 94],\n",
" ['Axinella infundibuliformis cf', 'Axinella infundibuliformis', 95],\n",
" ['Tunicata trunk?', 'Tunicata trunk', 100],\n",
" ['Phycis blennoides cf', 'Phycis blennoides', 92],\n",
" ['Porifera round small grey', 'Porifera small round', 89],\n",
" ['Sebastes norvegicus', 'Sebastes norvegicus', 100],\n",
" ['Actiniaria small pale', 'Actiniaria small', 86],\n",
" ['Actiniaria small pale', 'Actiniaria small', 86],\n",
" ['actiniaria small red', 'Actiniaria small', 89],\n",
" ['actiniaria small red', 'Actiniaria small', 89],\n",
" ['Boreomysis', 'Boreomysis sp.', 87],\n",
" ['Halcampia arctica', 'Halcampa arctica', 97],\n",
" ['Amphipoda shiny eyes', 'Amphipoda shiny eyes', 100],\n",
" ['Gaidropsarus argentatus CF', 'Gaidropsarus argentatus', 94],\n",
" ['halcampa artica', 'Halcampa arctica', 97],\n",
" ['Asteroidea cf', 'Asteroidea', 87],\n",
" ['Asteroidea cf', 'Asteroidea', 87],\n",
" ['Asteroidea cf', 'Asteroidea', 87],\n",
" ['Asteroidea cf', 'Asteroidea', 87],\n",
" ['Trawl mark cf', 'Trawl mark', 87],\n",
" ['Trawl mark cf', 'Trawl mark', 87],\n",
" ['Trawl mark cf', 'Trawl mark', 87],\n",
" ['Trawl mark cf', 'Trawl mark', 87],\n",
" ['Ceramaster granularis cf', 'Ceramaster granularis', 93],\n",
" ['Hymedesmia paupertas cf', 'Hymedesmia paupertas', 93],\n",
" ['Thenea abyssorum cf', 'Thenea abyssorum', 91],\n",
" ['Tethya citrina cf', 'Tethya citrina', 90],\n",
" ['Glyptocephalus cynoglossus cf', 'Glyptoceophalus cynoglossus', 93],\n",
" ['Rajella fyllae cf', 'Rajella fyllae', 90],\n",
" ['Bolocera tuediae cf', 'Bolocera tuediae', 91],\n",
" ['Mycale lingua cf', 'Mycale lingua', 90],\n",
" ['Bryozoa encrusting cf', 'Bryozoa encrusting', 92],\n",
" ['Stichastrella rosea cf', 'Stichastrella rosea', 93],\n",
" ['Parastichopus tremulus cf', 'Parastichopus tremulus', 94],\n",
" ['Nephtheidae cf', 'Nephtheidae', 88],\n",
" ['Ophiuroidea cf', 'Ophiuroidea', 88],\n",
" ['Asteronyx loveni cf', 'Asteronyx loveni', 91],\n",
" ['Filograna implexa cf', 'Filograna implexa', 92],\n",
" ['Brosme brosme cf', 'Brosme brosme', 90],\n",
" ['Phakellia fragment cf', 'Phakellia sp. fragment', 86],\n",
" ['Phakellia', 'Phakellia sp.', 86],\n",
" ['Porifera yellow dirty', 'Porifera dirty yellow', 100],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting white', 'Porifera encrusting', 86],\n",
" ['Nudibranchia cf', 'Nudibranchia', 89],\n",
" ['Spatangus purpureus cf', 'Spatangus purpureus', 93],\n",
" ['Spirorbinae', 'Spirorbinae', 100],\n",
" ['Trisopterus cf', 'Trisopterus sp.', 86],\n",
" ['Bryozoa calcareous branched', 'Bryozoa calcareous branched', 100],\n",
" ['Bryozoa calcareous branched', 'Bryozoa calcareous branched', 100],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Porifera encrusting red', 'Porifera encrusting', 90],\n",
" ['Cancer pagurus', 'Cancer pagurus', 100],\n",
" ['Epizoanthus', 'Epizoanthus sp.', 88],\n",
" ['Patellogastropoda', 'Patellogastropoda', 100],\n",
" ['Pennatula cf phosphorea', 'Pennatula phosphorea', 93],\n",
" ['Pelosina arborescens cf', 'Pelosina arborescens', 93],\n",
" ['Ophiuroidae', 'Ophiuroidea', 91],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Burrows small', 'Burrows small', 100],\n",
" ['Ophiuroidea', 'Ophiuroidea', 100],\n",
" ['Dysidea fragilis cf', 'Dysidea fragilis', 91],\n",
" ['Oceanapia', 'Oceanapia sp.', 86],\n",
" ['Porifera dirty yellow cf', 'Porifera dirty yellow', 93],\n",
" ['Cerianthidae cf', 'Cerianthidae', 89],\n",
" ['Cerianthidae cf', 'Cerianthidae', 89],\n",
" ['Cerianthidae cf', 'Cerianthidae', 89],\n",
" ['Asconema setubalense cf', 'Asconema setubalense', 93],\n",
" ['Actiniaria cf', 'Actiniaria', 87],\n",
" ['Actiniaria cf', 'Actiniaria', 87],\n",
" ['Actiniaria cf', 'Actiniaria', 87],\n",
" ['Actiniaria cf', 'Actiniaria', 87],\n",
" ['Actiniaria cf', 'Actiniaria', 87],\n",
" ['Actiniaria cf', 'Actiniaria', 87],\n",
" ['Actiniaria cf', 'Actiniaria', 87],\n",
" ['Hippasteria phrygiana cf', 'Hippasteria phrygiana', 93],\n",
" ['Chaetopterus tubes', 'Spiochaetopterus tubes', 90],\n",
" ['Seaweed fragments cf', 'Seaweed fragments', 92],\n",
" ['Lanice conchilega', 'Lanice conchilega', 100],\n",
" ['Aplysilla sulfurea cf', 'Aplysilla sulfurea', 92],\n",
" ['Porifera white bat', 'Porifera white bush', 86],\n",
" ['Polychaeta fishingnet', 'Polychaeta fishingnet', 100],\n",
" ['Craniella zetlandica cf', 'Craniella zetlandica', 93],\n",
" ['Actinostola callosa cf', 'Actinostola callosa', 93],\n",
" ['Polyplacophora', 'Polyplacophora', 100],\n",
" ['Polymastidae', 'Polymastiidae', 96],\n",
" ['Brachiopoda cf', 'Brachiopoda', 88],\n",
" ['Brachiopoda', 'Brachiopoda', 100],\n",
" ['Bryozoa calcareous branched cf', 'Bryozoa calcareous branched', 95],\n",
" ['Geodia macandrewii cf', 'Geodia macandrewii', 92],\n",
" ['Stryphnus ponderosus cf', 'Stryphnus ponderosus', 93],\n",
" ['Teleostei cf', 'Teleostei', 86],\n",
" ['Hormathiidae cf', 'Hormathiidae', 89],\n",
" ['Hippoglossoides platessoides cf', 'Hippoglossoides platessoides', 95],\n",
" ['Flabellum macandrewi cf', 'Flabellum macandrewi', 93],\n",
" ['Porifera white small round', 'Porifera small round', 87],\n",
" ['Aphroditidae cf', 'Aphroditidae', 89],\n",
" ['Kophobelemnon stelliferum', 'Kophobelemnon stelliferum', 100],\n",
" ['Chaetopterus', 'Chaetopterus sp.', 89],\n",
" ['Actiniaria pink small', 'Actiniaria small', 86],\n",
" ['Actiniaria pink small', 'Actiniaria small', 86],\n",
" ['Asterias rubens cf', 'Asterias rubens', 91],\n",
" ['Seaweed', 'Seaweed', 100],\n",
" ['Pleuronectiformes cf', 'Pleuronectiformes', 92],\n",
" ['itrupa tubes', 'Ditrupa tubes', 96],\n",
" ['Spatangoida cf', 'Spatangoida', 88],\n",
" ['endrodoa aggregata', 'Dendrodoa aggregata', 97],\n",
" ['Isodictya palmata cf', 'Isodictya palmata', 92],\n",
" ['Laminaria', 'Laminaria sp.', 86],\n",
" ['Laminaria', 'Laminaria sp.', 86],\n",
" ['Leptasterias muelleri cf', 'Leptasterias muelleri', 93],\n",
" ['Lithothamnion', 'Lithothamnion sp.', 90],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifea encrusting red', 'Porifera encrusting', 88],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Porifera encrusting ornge', 'Porifera encrusting', 86],\n",
" ['Serpulidae', 'Serpulidae', 100],\n",
" ['Corella parallelogramma', 'Corella parallelogramma', 100],\n",
" ...]"
]
},
"execution_count": 19,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"match = matchinglist(names, \n",
" slist, \n",
" scorelimit=86, \n",
" method='token_sort',\n",
" perfectmatch=True)\n",
"match"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Convert to dataframe"
]
},
{
"cell_type": "code",
"execution_count": 20,
"metadata": {},
"outputs": [],
"source": [
"result = pd.DataFrame(np.array(match).reshape(len(match),3))"
]
},
{
"cell_type": "code",
"execution_count": 21,
"metadata": {},
"outputs": [],
"source": [
"result.columns = ['Original','Match', 'Similarity']"
]
},
{
"cell_type": "code",
"execution_count": 22,
"metadata": {},
"outputs": [
{
"data": {
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"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>Original</th>\n",
" <th>Match</th>\n",
" <th>Similarity</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>Actiniaria</td>\n",
" <td>Actiniaria</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>Actiniaria</td>\n",
" <td>Actiniaria</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
" <td>Actiniaria</td>\n",
" <td>Actiniaria</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
" <td>Actiniaria</td>\n",
" <td>Actiniaria</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
" <td>Actiniaria</td>\n",
" <td>Actiniaria</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>5</th>\n",
" <td>Actiniaria</td>\n",
" <td>Actiniaria</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>6</th>\n",
" <td>Actiniaria</td>\n",
" <td>Actiniaria</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>7</th>\n",
" <td>Actiniaria buried</td>\n",
" <td>Actiniaria buried</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8</th>\n",
" <td>Actiniaria buried</td>\n",
" <td>Actiniaria buried</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>9</th>\n",
" <td>Actiniaria red</td>\n",
" <td>Actiniaria buried</td>\n",
" <td>90</td>\n",
" </tr>\n",
" <tr>\n",
" <th>10</th>\n",
" <td>Actiniaria red</td>\n",
" <td>Actiniaria buried</td>\n",
" <td>90</td>\n",
" </tr>\n",
" <tr>\n",
" <th>11</th>\n",
" <td>Actiniaria small</td>\n",
" <td>Actiniaria small</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>12</th>\n",
" <td>Actiniaria small</td>\n",
" <td>Actiniaria small</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>13</th>\n",
" <td>Actiniaria small pink</td>\n",
" <td>Actiniaria small</td>\n",
" <td>86</td>\n",
" </tr>\n",
" <tr>\n",
" <th>14</th>\n",
" <td>Actiniaria small pink</td>\n",
" <td>Actiniaria small</td>\n",
" <td>86</td>\n",
" </tr>\n",
" <tr>\n",
" <th>15</th>\n",
" <td>Actiniaria small red</td>\n",
" <td>Actiniaria small</td>\n",
" <td>89</td>\n",
" </tr>\n",
" <tr>\n",
" <th>16</th>\n",
" <td>Actiniaria small red</td>\n",
" <td>Actiniaria small</td>\n",
" <td>89</td>\n",
" </tr>\n",
" <tr>\n",
" <th>17</th>\n",
" <td>Actiniaria yellow stolon</td>\n",
" <td>Actiniaria yellow stolon</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>18</th>\n",
" <td>Amblyraja hyperborea</td>\n",
" <td>Amblyraja hyperborea</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>19</th>\n",
" <td>Amphipoda</td>\n",
" <td>Amphipoda</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>20</th>\n",
" <td>Amphipoda</td>\n",
" <td>Amphipoda</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>21</th>\n",
" <td>Amphipoda</td>\n",
" <td>Amphipoda</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>22</th>\n",
" <td>Amphipoda</td>\n",
" <td>Amphipoda</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>23</th>\n",
" <td>Aplysilla sulfurea</td>\n",
" <td>Aplysilla sulfurea</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>24</th>\n",
" <td>Ascidia mentula</td>\n",
" <td>Ascidia mentula</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>25</th>\n",
" <td>Ascidia virginea</td>\n",
" <td>Ascidia virginea</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>26</th>\n",
" <td>Ascidiacea colon</td>\n",
" <td>Ascidiacea colonial</td>\n",
" <td>91</td>\n",
" </tr>\n",
" <tr>\n",
" <th>27</th>\n",
" <td>Ascidiacea colonial</td>\n",
" <td>Ascidiacea colonial</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>28</th>\n",
" <td>Ascidiacea colonial</td>\n",
" <td>Ascidiacea colonial erect</td>\n",
" <td>86</td>\n",
" </tr>\n",
" <tr>\n",
" <th>29</th>\n",
" <td>Ascidiacea solit</td>\n",
" <td>Ascidiacea solitary</td>\n",
" <td>91</td>\n",
" </tr>\n",
" <tr>\n",
" <th>...</th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1564</th>\n",
" <td>Heliometra glacialis</td>\n",
" <td>Heliometra glacialis</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1565</th>\n",
" <td>Hymenaster pellucidus</td>\n",
" <td>Hymenaster pellucidus</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1566</th>\n",
" <td>Infundibulipora lucernaria</td>\n",
" <td>Infundibulipora lucernaria</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1567</th>\n",
" <td>Leptasterias</td>\n",
" <td>Leptasterias sp.</td>\n",
" <td>89</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1568</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1569</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1570</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1571</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1572</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1573</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1574</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1575</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1576</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1577</th>\n",
" <td>Litter</td>\n",
" <td>Litter</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1578</th>\n",
" <td>Naticidae eggcapsule</td>\n",
" <td>Naticidae eggcapsule</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1579</th>\n",
" <td>Nymphon hirtipes</td>\n",
" <td>Nymphon hirtipes</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1580</th>\n",
" <td>Ophiopleura borealis</td>\n",
" <td>Ophiopleura borealis</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1581</th>\n",
" <td>Parasmittina jeffreysi</td>\n",
" <td>Parasmittina jeffreysi</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1582</th>\n",
" <td>Phyllodocidae</td>\n",
" <td>Phyllodocidae</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1583</th>\n",
" <td>Polychaeta sedentaria</td>\n",
" <td>Polychaeta sedentaria</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1584</th>\n",
" <td>Polychatea tube</td>\n",
" <td>Polychatea tube</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1585</th>\n",
" <td>Poraniomorpha</td>\n",
" <td>Poraniomorpha sp.</td>\n",
" <td>90</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1586</th>\n",
" <td>Porifera white bush</td>\n",
" <td>Porifera white bush</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1587</th>\n",
" <td>Prosobranchiata</td>\n",
" <td>Prosobranchiata</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1588</th>\n",
" <td>Pteraster obscurus</td>\n",
" <td>Pteraster obscurus</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1589</th>\n",
" <td>Quasillina</td>\n",
" <td>Quasillina sp.</td>\n",
" <td>87</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1590</th>\n",
" <td>Solasteridae</td>\n",
" <td>Stylasteridae</td>\n",
" <td>88</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1591</th>\n",
" <td>Sycon stalked</td>\n",
" <td>Sycon stalked</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1592</th>\n",
" <td>Thuiaria obsoleta</td>\n",
" <td>Thuiaria obsoleta</td>\n",
" <td>100</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1593</th>\n",
" <td>Tremaster mirabilis</td>\n",
" <td>Tremaster mirabilis</td>\n",
" <td>100</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>1594 rows × 3 columns</p>\n",
"</div>"
],
"text/plain": [
" Original Match Similarity\n",
"0 Actiniaria Actiniaria 100\n",
"1 Actiniaria Actiniaria 100\n",
"2 Actiniaria Actiniaria 100\n",
"3 Actiniaria Actiniaria 100\n",
"4 Actiniaria Actiniaria 100\n",
"5 Actiniaria Actiniaria 100\n",
"6 Actiniaria Actiniaria 100\n",
"7 Actiniaria buried Actiniaria buried 100\n",
"8 Actiniaria buried Actiniaria buried 100\n",
"9 Actiniaria red Actiniaria buried 90\n",
"10 Actiniaria red Actiniaria buried 90\n",
"11 Actiniaria small Actiniaria small 100\n",
"12 Actiniaria small Actiniaria small 100\n",
"13 Actiniaria small pink Actiniaria small 86\n",
"14 Actiniaria small pink Actiniaria small 86\n",
"15 Actiniaria small red Actiniaria small 89\n",
"16 Actiniaria small red Actiniaria small 89\n",
"17 Actiniaria yellow stolon Actiniaria yellow stolon 100\n",
"18 Amblyraja hyperborea Amblyraja hyperborea 100\n",
"19 Amphipoda Amphipoda 100\n",
"20 Amphipoda Amphipoda 100\n",
"21 Amphipoda Amphipoda 100\n",
"22 Amphipoda Amphipoda 100\n",
"23 Aplysilla sulfurea Aplysilla sulfurea 100\n",
"24 Ascidia mentula Ascidia mentula 100\n",
"25 Ascidia virginea Ascidia virginea 100\n",
"26 Ascidiacea colon Ascidiacea colonial 91\n",
"27 Ascidiacea colonial Ascidiacea colonial 100\n",
"28 Ascidiacea colonial Ascidiacea colonial erect 86\n",
"29 Ascidiacea solit Ascidiacea solitary 91\n",
"... ... ... ...\n",
"1564 Heliometra glacialis Heliometra glacialis 100\n",
"1565 Hymenaster pellucidus Hymenaster pellucidus 100\n",
"1566 Infundibulipora lucernaria Infundibulipora lucernaria 100\n",
"1567 Leptasterias Leptasterias sp. 89\n",
"1568 Litter Litter 100\n",
"1569 Litter Litter 100\n",
"1570 Litter Litter 100\n",
"1571 Litter Litter 100\n",
"1572 Litter Litter 100\n",
"1573 Litter Litter 100\n",
"1574 Litter Litter 100\n",
"1575 Litter Litter 100\n",
"1576 Litter Litter 100\n",
"1577 Litter Litter 100\n",
"1578 Naticidae eggcapsule Naticidae eggcapsule 100\n",
"1579 Nymphon hirtipes Nymphon hirtipes 100\n",
"1580 Ophiopleura borealis Ophiopleura borealis 100\n",
"1581 Parasmittina jeffreysi Parasmittina jeffreysi 100\n",
"1582 Phyllodocidae Phyllodocidae 100\n",
"1583 Polychaeta sedentaria Polychaeta sedentaria 100\n",
"1584 Polychatea tube Polychatea tube 100\n",
"1585 Poraniomorpha Poraniomorpha sp. 90\n",
"1586 Porifera white bush Porifera white bush 100\n",
"1587 Prosobranchiata Prosobranchiata 100\n",
"1588 Pteraster obscurus Pteraster obscurus 100\n",
"1589 Quasillina Quasillina sp. 87\n",
"1590 Solasteridae Stylasteridae 88\n",
"1591 Sycon stalked Sycon stalked 100\n",
"1592 Thuiaria obsoleta Thuiaria obsoleta 100\n",
"1593 Tremaster mirabilis Tremaster mirabilis 100\n",
"\n",
"[1594 rows x 3 columns]"
]
},
"execution_count": 22,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
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]
},
{
"cell_type": "code",
"execution_count": 131,
"metadata": {},
"outputs": [],
"source": [
"result.to_csv('name_changes.csv', index=False, encoding='latin1')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
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},
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}
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