ethanagb

Keybase proof

I hereby claim:

• I am ethanagbaker on github.
• I am ethanagbaker (https://keybase.io/ethanagbaker) on keybase.
• I have a public key ASCBgKcJXAC4wb3-bC23uuxCxhNCm5NuJ5RxJTMGcrzDlgo

To claim this, I am signing this object:

ethanagb

{
 "links": [
  {
   "source": 0,
   "target": 402,
   "weight": 1
  },
  {
   "source": 0,
   "target": 315,

ethanagb

#!/usr/bin/env python

import copy

def allCombos(scratch, data):
    '''
    Returns all possible combinations of objects in an array

    Args:
    ----

ethanagb

from Bio import SeqIO

############
pwd = "/Users/Ethan/Desktop/testdir/" #set the present working dir
############

with open(str(pwd) + "namelist.txt") as filenamesFile:
    filenames = filenamesFile.readlines()
    nameList =[str(e.strip()) for e in filenames]
filenamesFile.close()

ethanagb

from __future__ import print_function
import sys
from Bio import SeqIO
 
records = dict()
for record in SeqIO.parse('Trinity.fasta',"fasta"):
    seq_id = record.id.split('_')[0] 
    if seq_id not in records:  records[seq_id] = list()
    records[seq_id].append(record)
 

ethanagb

#from pprint import pprint

FN ='Trinity.fasta'


def get_data(fn):
    with open(fn, mode='r') as fh:
        header, fasta = "",""
        for line in fh: