eloylp

Fedora35 hibernation

This guide helps to configure the hibernation on a default Fedora35 (also worked fine in previous Fedora34) installation by using a swap file. The Fedora35 installation comes with btrfs as default filesystem. Also, it comes with a zram swap device:

$ swapon
NAME       TYPE      SIZE USED PRIO
/dev/zram0 partition   8G   0B  100

jmuhlich

import sys
import io
import warnings
import xml.etree.ElementTree
import tifffile

if len(sys.argv) != 2:
    print(f"Usage: ometiff-channel-names.py input.ome.tif")
    print("Print the channel names for the first image in an OME-TIFF file.")
    sys.exit(1)

hellricer

#!/bin/sh

echo "# 24-bit (true-color)"
# based on: https://gist.github.com/XVilka/8346728
term_cols="$(tput cols || echo 80)"
cols=$(echo "2^((l($term_cols)/l(2))-1)" | bc -l 2> /dev/null)
rows=$(( cols / 2 ))
awk -v cols="$cols" -v rows="$rows" 'BEGIN{
    s="  ";
    m=cols+rows;

vke-code

#!/bin/bash

# Clone all github.com repositories for a specified user.

if [ $# -eq 0 ]
  then
    echo "Usage: $0 <user_name> "
    exit;
fi

johnhw

### JHW 2018
import numpy as np
import umap



# This code from the excellent module at:
# https://stackoverflow.com/questions/4643647/fast-prime-factorization-module
    
import random

supposedly

Big ol' list of third-party Python 3 argparse alternatives

Bold+italics means the lib is probably worth checking out above the rest. joffrey is my own.

argparse wrappers

• argh
• argson
• argvee
• ClassCLI
• Declarative Parser

max-mapper

doi,id,type,url
10.7554/eLife.00007,dataro1,generated-dataset,http://dx.doi.org/10.5061/dryad.gs45f
10.7554/eLife.00048,dataro1,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40298
10.7554/eLife.00049,dataro1,generated-dataset,http://www.ncbi.nlm.nih.gov/genbank/
10.7554/eLife.00065,dataro1,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE39313http://www.ncbi.nlm.nih.gov/geo/
10.7554/eLife.00170,dataro1,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41937http://eisenlab.org/data/TAF7Lhttp://www.ncbi.nlm.nih.gov/geo/
10.7554/eLife.00170,dataro2,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21365http://www.ncbi.nlm.nih.gov/geo/
10.7554/eLife.00170,dataro3,generated-dataset,http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27450http://www.ncbi.nlm.nih.gov/geo/
10.7554/eLife.00170,dataro4,generated-dataset,http://trace.ddbj.nig.ac.jp/DRASearch/study?acc=DRP000383http://www.ddbj.nig.ac.jp/
10.7554/eLife.00184,dataro1,

Spindel

import uuid
import random

from afase.models.meta import Base

from sqlalchemy import (
    Column,
    Text,
    Date,
    ForeignKey,

oganm

library(XLConnect)
library(magrittr)
library(dplyr)

# mouse rna seq data download Zeisel et al. download------
dir.create('data-raw/ZeiselMouse', showWarnings=FALSE)
download.file(url= 'http://storage.googleapis.com/linnarsson-lab-www-blobs/blobs/cortex/expression_mRNA_17-Aug-2014.txt', 
destfile='data-raw/ZeiselMouse/mouseRNASeq_Zeisel 2015.txt')
download.file(url = 'http://science.sciencemag.org/highwire/filestream/628248/field_highwire_adjunct_files/1/aaa1934_TableS1.xlsx',
              destfile = 'data-raw/ZeiselMouse/markerGenes.xlsx')

gene1wood

try:
     import xmlrpclib
except ImportError:
     import xmlrpc.client as xmlrpclib

client = xmlrpclib.ServerProxy('https://pypi.python.org/pypi')
packages = client.list_packages()

total = len(packages)
dashes = len([x for x in packages if '-' in x])