smk_biogenicas.csh

#!/bin/csh -f
#
# Version @(#)$Id$
# Path    $Source$
# Date    $Date$
#
# This script sets up needed environment variables for processing area source
# emissions in SMOKE and calls the scripts that run the SMOKE programs.
#
# Script created by : M. Houyoux, CEP Environmental Modeling Center
#
#*********************************************************************

## Set optional customized SMKMERGE output file names
## setenv SMKMERGE_CUSTOM_OUTPUT  N  # Y define your own output file names from SMKMERGE

setenv SMK_HOME /home/everdaniel/4.8.1/
setenv SMKROOT /home/everdaniel/4.8.1/subsys/smoke

## Set Assigns file name
setenv ASSIGNS_FILE $SMKROOT/assigns/ASSIGNS.biogenicas

## Set source category
setenv SMK_SOURCE    A          # source category to process
setenv MRG_SOURCE    A          # source category to merge

## Set programs to run...

## Time-independent programs
#setenv RUN_CNTLMAT   N          # run control and growth matrix program
setenv RUN_SMKINVEN  Y          # run inventory import program
setenv RUN_SPCMAT    Y          # run speciation matrix program
setenv RUN_GRDMAT    Y          # run gridding matrix program

## Time-dependent programs
setenv RUN_TEMPORAL  Y          # run temporal allocation program
setenv RUN_SMKMERGE  Y          # run merge program

## Quality assurance
setenv RUN_SMKREPORT N         # run emissions reporting program

## Program-specific controls...

## For Smkinven
setenv IMPORT_GRDNETCDF_YN  Y   # Y import EDGAR gridded inventories
setenv NETCDF_POL_UNIT 'kg m-2 s-1'   # define the unit of EDGAR variables
setenv NETCDF_INV_YEAR    2019  # defibe the year of EDGAR inventories
setenv FILL_ANNUAL          N   # Y fills annual data with average-day data
setenv IMPORT_GRDIOAPI_YN   N   # Y imports gridded I/O API NetCDF inventory data
setenv RAW_DUP_CHECK        N   # Y checks for duplicate records
setenv SMK_BASEYR_OVERRIDE  0   # year to override the base year of the inventory
setenv SMK_DEFAULT_TZONE    4   # default time zone for sources not in the COSTCY file
setenv SMK_NHAPEXCLUDE_YN   N   # Y uses NHAPEXCLUDE file when integrating toxic sources
#setenv SMKINVEN_FORMULA   "PMC=PM10-PM2_5" # formula for computing emissions value
setenv SMKINVEN_FORMULA    "" # formula for computing emissions value
setenv WEST_HSPHERE         Y   # Y converts longitudes to negative values
setenv WKDAY_NORMALIZE      Y   # Y treats average-day emissions as weekday only
setenv WRITE_ANN_ZERO       N   # Y writes zero emission values to intermediate inventory
setenv ALLOW_NEGATIVE       N   # Y allow negative output emission data
#      INVNAME1         set by make_invdir.csh script
#      INVNAME2         set by make_invdir.csh scripts
#      OUTZONE          see "Multiple-program controls" below
#      SMK_MAXERROR     see "Multiple-program controls" below
#      SMK_MAXWARNING   see "Multiple-program controls" below
#      SMK_TMPDIR       set by assigns/set_dirs.scr script

## For Grdmat
#      IOAPI_ISPH       set by Assigns file
#      REPORT_DEFAULTS  see "Multiple-program controls" below

## For Spcmat
setenv POLLUTANT_CONVERSION Y   # Y uses the GSCNV pollutant conversion file
#      REPORT_DEFAULTS  see "Multiple-program controls" below

## For Temporal
setenv RENORM_TPROF         Y   # Y normalizes the temporal profiles
setenv UNIFORM_TPROF_YN     N   # Y uses uniform temporal profiles for all sources
setenv ZONE4WM              Y   # Y applies temporal profiles using time zones
#      OUTZONE          see "Multiple-program controls" below
#      REPORT_DEFAULTS  see "Multiple-program controls" below
#      SMK_AVEDAY_YN    see "Multiple-program controls" below
#      SMK_MAXERROR     see "Multiple-program controls" below
#      SMK_MAXWARNING   see "Multiple-program controls" below

## For Smkmerge
setenv MRG_SPCMAT_YN        Y   # Y produces speciated output
setenv MRG_TEMPORAL_YN      Y   # Y produces temporally allocated output
setenv MRG_GRDOUT_YN        Y   # Y produces a gridded output file
setenv MRG_REPCNY_YN        Y   # Y produces a report of emission totals by county
setenv MRG_REPSTA_YN        Y   # Y produces a report of emission totals by state
setenv MRG_GRDOUT_UNIT      moles/s   # units for the gridded output file
setenv MRG_TOTOUT_UNIT      moles/day # units for the state and county reports
setenv SMK_REPORT_TIME      230000    # hour for reporting daily emissions
#      SMK_AVEDAY_YN    see "Multiple-program controls" below

## For Smkreport
setenv REPORT_ZERO_VALUES   N   # Y outputs entries with all zero values

## Multiple-program controls
setenv USE_EXP_GEO_CODES    Y   # use geographical code instead of COSTCY file
setenv DAY_SPECIFIC_YN      N   # process daily invenotry
setenv HOUR_SPECIFIC_YN     N   # process daily invenotry
setenv OUTZONE              0   # time zone of output emissions
setenv REPORT_DEFAULTS      N   # Y reports sources that use default cross-reference
setenv SMK_AVEDAY_YN        N   # Y uses average-day emissions instead of annual emissions
setenv SMK_MAXERROR         100 # maximum number of error messages in log file
setenv SMK_MAXWARNING       100 # maximum number of warning messages in log file

## Script settings
setenv SRCABBR            edgar # abbreviation for naming log files
setenv QA_TYPE             all  #   all # type of QA to perform [none, all, part1, part2, or custom]
setenv PROMPTFLAG           N   # Y prompts for user input
setenv AUTO_DELETE          Y   # Y automatically deletes I/O API NetCDF output files
setenv AUTO_DELETE_LOG      Y   # Y automatically deletes log files
setenv DEBUGMODE            N   # Y runs program in debugger
setenv DEBUG_EXE            pgdbg # debugger to use when DEBUGMODE = Y

## Assigns file override settings
# setenv SPC_OVERRIDE  cmaq.cb4p25  # chemical mechanism override
# setenv YEAR_OVERRIDE              # base year override
# setenv INVTABLE_OVERRIDE          # inventory table override

##############################################################################

## Run Smkinven, Spcmat, and Grdmat
#
setenv RUN_PART1 Y
source $ASSIGNS_FILE   # Invoke Assigns file

# Reset NHAPEXCLUDE file to exclude all sources
# This is needed for now because the stationary area criteria and non-point
#    toxics inventories are not consistent and should not be integrated.
setenv NHAPEXCLUDE $INVDIR/other/nhapexclude.all.txt

source smk_run.csh     # Run programs
source qa_run.csh      # Run QA for part 1
setenv RUN_PART1 N

## Loop through days to run Temporal and Smkmerge
#
setenv RUN_PART2 Y
setenv RUN_PART4 Y
set cnt = 0
set g_stdate_sav = $G_STDATE
while ( $cnt < $EPI_NDAY )

   @ cnt = $cnt + $NDAYS
   source $ASSIGNS_FILE   # Invoke Assigns file to set new dates
   source smk_run.csh     # Run programs
   source qa_run.csh      # Run QA for part 2
   setenv G_STDATE_ADVANCE $cnt

end
setenv RUN_PART2 N
setenv RUN_PART4 N
unsetenv G_STDATE_ADVANCE

#
## Ending of script
#
exit( 0 )