avrilcoghlan

import sys
import os
from collections import defaultdict
import calc_dists_to_top_of_GO
import calc_dists_to_top_of_GO_using_bfs

class Error (Exception): pass
      
#====================================================================#

davfre

SAM and BAM filtering one-liners

@author: David Fredman, david.fredmanAAAAAA@gmail.com (sans poly-A tail)
@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/

Please extend with additional/faster/better solutions via a pull request!

BWA mapping (using piping for minimal disk I/O)

stevenpetryk

module Geneticist
  # The syntax is easy here. If you know how to set up a Punnett Square in real life,
  # it's pretty self explanatory.
  #
  #   # Checking for green eyes
  #   square = Geneticist::PunnettSquare.new('Gg', 'gg')
  #   square.result
  #   #=> {"Gg"=>2, "gg"=>2}
  #
  #   # Checking a cross between a spider ball python and a pastel ball python

jamescasbon

mattratleph

vimdiff cheat sheet

##git mergetool

In the middle file (future merged file), you can navigate between conflicts with ]c and [c.

Choose which version you want to keep with :diffget //2 or :diffget //3 (the //2 and //3 are unique identifiers for the target/master copy and the merge/branch copy file names).

:diffupdate (to remove leftover spacing issues)

:only (once you’re done reviewing all conflicts, this shows only the middle/merged file)

snapbug

#!/usr/bin/env python
from collections import defaultdict
from random import choice, randint
from re import findall

# Make sure that this will run in python 2 as well as 3
try:
	input = raw_input
except NameError:
	pass