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| 2018-10-16 08:43:28,966 UTC [50059] INFO esmvaltool._main:123 | |
| ______________________________________________________________________ | |
| _____ ____ __ ____ __ _ _____ _ | |
| | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | |
| | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |
| | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | | |
| |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| | |
| ______________________________________________________________________ | |
| ESMValTool - Earth System Model Evaluation Tool | |
| http://www.esmvaltool.org | |
| CORE DEVELOPMENT TEAM AND CONTACTS: | |
| Veronika Eyring (PI; DLR, Germany - veronika.eyring@dlr.de) | |
| Bouwe Andela (NLESC, Netherlands - b.andela@esciencecenter.nl) | |
| Bjoern Broetz (DLR, Germany - bjoern.broetz@dlr.de) | |
| Niels Drost (NLESC, Netherlands - n.drost@esciencecenter.nl) | |
| Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) | |
| Axel Lauer (DLR, Germany - axel.lauer@dlr.de) | |
| Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) | |
| Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) | |
| Mattia Righi (DLR, Germany - mattia.righi@dlr.de) | |
| Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) | |
| For further help, please read the documentation at | |
| http://esmvaltool.readthedocs.io. Have fun! | |
| 2018-10-16 08:43:28,966 UTC [50059] INFO esmvaltool._main:125 Using config file /Users/evert/code/fselten/config-user.yml | |
| 2018-10-16 08:43:28,967 UTC [50059] INFO esmvaltool._main:126 Writing program log files to: | |
| /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/run/main_log.txt | |
| /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/run/main_log_debug.txt | |
| 2018-10-16 08:43:28,967 UTC [50059] INFO esmvaltool._main:148 Starting the Earth System Model Evaluation Tool v2.0a1 at time: 2018-10-16 08:43:28 UTC | |
| 2018-10-16 08:43:28,968 UTC [50059] INFO esmvaltool._main:150 ---------------------------------------------------------------------- | |
| 2018-10-16 08:43:28,968 UTC [50059] INFO esmvaltool._main:151 RECIPE = /Users/evert/code/fselten/test.yml | |
| 2018-10-16 08:43:28,968 UTC [50059] INFO esmvaltool._main:152 RUNDIR = /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/run | |
| 2018-10-16 08:43:28,968 UTC [50059] INFO esmvaltool._main:153 WORKDIR = /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/work | |
| 2018-10-16 08:43:28,968 UTC [50059] INFO esmvaltool._main:154 PREPROCDIR = /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc | |
| 2018-10-16 08:43:28,968 UTC [50059] INFO esmvaltool._main:155 PLOTDIR = /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/plots | |
| 2018-10-16 08:43:28,968 UTC [50059] INFO esmvaltool._main:156 ---------------------------------------------------------------------- | |
| 2018-10-16 08:43:28,968 UTC [50059] INFO esmvaltool._main:159 Running tasks using at most 1 processes | |
| 2018-10-16 08:43:28,969 UTC [50059] INFO esmvaltool._main:162 If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. In that case, try reducing 'max_parallel_tasks' in your user configuration file. | |
| 2018-10-16 08:43:28,969 UTC [50059] DEBUG esmvaltool._recipe:83 Checking recipe against schema /usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/recipe_schema.yml | |
| 2018-10-16 08:43:28,978 UTC [50059] DEBUG esmvaltool._recipe:790 Retrieving diagnostics from recipe | |
| 2018-10-16 08:43:28,978 UTC [50059] DEBUG esmvaltool._recipe:865 Populating list of variables for diagnostic diagnostic1 | |
| 2018-10-16 08:43:28,978 UTC [50059] DEBUG esmvaltool._config:137 Retrieving CMIP5 configuration | |
| 2018-10-16 08:43:28,979 UTC [50059] DEBUG esmvaltool._recipe:886 Setting script for diagnostic diagnostic1 | |
| 2018-10-16 08:43:28,979 UTC [50059] INFO esmvaltool._recipe:943 Creating tasks from recipe | |
| 2018-10-16 08:43:28,979 UTC [50059] INFO esmvaltool._recipe:947 Creating tasks for diagnostic diagnostic1 | |
| 2018-10-16 08:43:28,979 UTC [50059] INFO esmvaltool._recipe:952 Creating preprocessor task diagnostic1/pr | |
| 2018-10-16 08:43:28,979 UTC [50059] INFO esmvaltool._recipe:698 Creating preprocessor 'pp1' task for variable 'pr' | |
| 2018-10-16 08:43:28,979 UTC [50059] DEBUG esmvaltool._recipe:266 If not present: adding keys from CMOR table to {'preprocessor': 'pp1', 'field': 'T2Ms', 'short_name': 'pr', 'diagnostic': 'diagnostic1', 'dataset': 'ACCESS1-3', 'project': 'CMIP5', 'mip': 'Amon', 'exp': 'historical', 'ensemble': 'r1i1p1', 'start_year': 1850, 'end_year': 2005, 'cmor_table': 'CMIP5', 'filename': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005.nc'} | |
| 2018-10-16 08:43:28,980 UTC [50059] DEBUG esmvaltool._config:137 Retrieving CMIP5 configuration | |
| 2018-10-16 08:43:28,980 UTC [50059] DEBUG esmvaltool._config:143 Retrieving institute for CMIP5 dataset ACCESS1-3 | |
| 2018-10-16 08:43:28,980 UTC [50059] DEBUG esmvaltool._config:137 Retrieving CMIP5 configuration | |
| 2018-10-16 08:43:28,980 UTC [50059] DEBUG esmvaltool._data_finder:22 Looking for files matching pr_Amon_ACCESS1-3_historical_r1i1p1_* in /Users/evert/code/fselten/ | |
| 2018-10-16 08:43:28,990 UTC [50059] INFO esmvaltool._recipe:533 Using input files for variable pr of dataset ACCESS1-3: | |
| /Users/evert/code/fselten/pr_Amon_ACCESS1-3_historical_r1i1p1_185001-200512.nc | |
| 2018-10-16 08:43:28,991 UTC [50059] INFO esmvaltool._recipe:966 Creating diagnostic task diagnostic1/test | |
| 2018-10-16 08:43:28,991 UTC [50059] DEBUG esmvaltool._recipe:928 Linking tasks for diagnostic diagnostic1 script test | |
| 2018-10-16 08:43:28,991 UTC [50059] DEBUG esmvaltool._recipe:937 Pattern diagnostic1/pr matches ['diagnostic1/pr'] | |
| 2018-10-16 08:43:28,991 UTC [50059] DEBUG esmvaltool._main:180 Recipe summary: | |
| DiagnosticTask: | |
| script: /Users/evert/code/fselten/test.py | |
| settings: | |
| { 'log_level': 'info', | |
| 'max_data_filesize': 100, | |
| 'output_file_type': 'pdf', | |
| 'plot_dir': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/plots/diagnostic1/test', | |
| 'recipe': 'test.yml', | |
| 'run_dir': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/run/diagnostic1/test', | |
| 'script': 'test', | |
| 'version': '2.0a1', | |
| 'work_dir': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/work/diagnostic1/test', | |
| 'write_netcdf': True, | |
| 'write_plots': True} | |
| ancestors: | |
| PreprocessingTask: | |
| order: ('fix_file', 'load_cubes', 'fix_metadata', 'concatenate', 'cmor_check_metadata', 'extract_time', 'fix_data', 'seasonal_mean', 'cmor_check_data', 'save', 'cleanup', 'extract_metadata') | |
| settings: | |
| { 'CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005.nc': { 'cleanup': { 'remove': [ '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005_fixed']}, | |
| 'cmor_check_data': { 'cmor_table': 'CMIP5', | |
| 'mip': 'Amon', | |
| 'short_name': 'pr'}, | |
| 'cmor_check_metadata': { 'cmor_table': 'CMIP5', | |
| 'mip': 'Amon', | |
| 'short_name': 'pr'}, | |
| 'concatenate': { }, | |
| 'extract_metadata': { 'write_ncl': False}, | |
| 'extract_time': { 'd1': 1, | |
| 'd2': 1, | |
| 'mo1': 1, | |
| 'mo2': 1, | |
| 'yr1': 1850, | |
| 'yr2': 2006}, | |
| 'fix_data': { 'cmor_table': 'CMIP5', | |
| 'dataset': 'ACCESS1-3', | |
| 'mip': 'Amon', | |
| 'project': 'CMIP5', | |
| 'short_name': 'pr'}, | |
| 'fix_file': { 'dataset': 'ACCESS1-3', | |
| 'output_dir': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005_fixed', | |
| 'project': 'CMIP5', | |
| 'short_name': 'pr'}, | |
| 'fix_metadata': { 'cmor_table': 'CMIP5', | |
| 'dataset': 'ACCESS1-3', | |
| 'mip': 'Amon', | |
| 'project': 'CMIP5', | |
| 'short_name': 'pr'}, | |
| 'load_cubes': { 'callback': <function concatenate_callback at 0x10ff6bae8>, | |
| 'constraints': 'precipitation_flux', | |
| 'filename': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005.nc', | |
| 'metadata': { 'cmor_table': 'CMIP5', | |
| 'dataset': 'ACCESS1-3', | |
| 'diagnostic': 'diagnostic1', | |
| 'end_year': 2005, | |
| 'ensemble': 'r1i1p1', | |
| 'exp': 'historical', | |
| 'field': 'T2Ms', | |
| 'filename': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005.nc', | |
| 'long_name': 'Precipitation', | |
| 'mip': 'Amon', | |
| 'preprocessor': 'pp1', | |
| 'project': 'CMIP5', | |
| 'short_name': 'pr', | |
| 'standard_name': 'precipitation_flux', | |
| 'start_year': 1850, | |
| 'units': 'kg ' | |
| 'm-2 ' | |
| 's-1'}}, | |
| 'save': { 'compress': False}, | |
| 'seasonal_mean': { }}} | |
| ancestors: | |
| None | |
| input_files: ['/Users/evert/code/fselten/pr_Amon_ACCESS1-3_historical_r1i1p1_185001-200512.nc'] | |
| 2018-10-16 08:43:28,993 UTC [50059] INFO esmvaltool._task:481 Running 2 tasks sequentially | |
| 2018-10-16 08:43:28,993 UTC [50059] DEBUG esmvaltool.preprocessor:181 Processing {'/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005.nc': ['/Users/evert/code/fselten/pr_Amon_ACCESS1-3_historical_r1i1p1_185001-200512.nc']} | |
| 2018-10-16 08:43:28,993 UTC [50059] DEBUG esmvaltool.preprocessor:231 Running preprocessor step fix_file | |
| 2018-10-16 08:43:28,993 UTC [50059] DEBUG esmvaltool.preprocessor:242 Running fix_file(/Users/evert/code/fselten/pr_Amon_ACCESS1-3_historical_r1i1p1_185001-200512.nc, {'project': 'CMIP5', 'dataset': 'ACCESS1-3', 'short_name': 'pr', 'output_dir': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005_fixed'}) | |
| 2018-10-16 08:43:28,994 UTC [50059] DEBUG esmvaltool.preprocessor:231 Running preprocessor step load_cubes | |
| 2018-10-16 08:43:28,994 UTC [50059] DEBUG esmvaltool.preprocessor:236 Running load_cubes(('/Users/evert/code/fselten/pr_Amon_ACCESS1-3_historical_r1i1p1_185001-200512.nc',), {'callback': <function concatenate_callback at 0x10ff6bae8>, 'filename': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005.nc', 'metadata': {'preprocessor': 'pp1', 'field': 'T2Ms', 'short_name': 'pr', 'diagnostic': 'diagnostic1', 'dataset': 'ACCESS1-3', 'project': 'CMIP5', 'mip': 'Amon', 'exp': 'historical', 'ensemble': 'r1i1p1', 'start_year': 1850, 'end_year': 2005, 'cmor_table': 'CMIP5', 'filename': '/Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005.nc', 'standard_name': 'precipitation_flux', 'long_name': 'Precipitation', 'units': 'kg m-2 s-1'}, 'constraints': 'precipitation_flux'}) | |
| 2018-10-16 08:43:28,994 UTC [50059] DEBUG esmvaltool.preprocessor._io:52 Loading: | |
| /Users/evert/code/fselten/pr_Amon_ACCESS1-3_historical_r1i1p1_185001-200512.nc | |
| 2018-10-16 08:43:29,031 UTC [50059] DEBUG esmvaltool.preprocessor:231 Running preprocessor step fix_metadata | |
| 2018-10-16 08:43:29,032 UTC [50059] DEBUG esmvaltool.preprocessor:242 Running fix_metadata(precipitation_flux / (kg m-2 s-1) (time: 1872; latitude: 145; longitude: 192) | |
| Dimension coordinates: | |
| time x - - | |
| latitude - x - | |
| longitude - - x | |
| Attributes: | |
| Conventions: CF-1.4 | |
| _filename: /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/prepr... | |
| associated_files: baseURL: http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile: gridspec_atmos_fx_ACCESS1-3_historical_r0i0p0.nc... | |
| branch_time: 90945.0 | |
| cmor_version: 2.8.0 | |
| comment: at surface; includes both liquid and solid phases from all types of clouds... | |
| contact: The ACCESS wiki: http://wiki.csiro.au/confluence/display/ACCESS/Home. Contact... | |
| experiment: historical | |
| experiment_id: historical | |
| forcing: GHG, Oz, SA, Sl, Vl, BC, OC, (GHG = CO2, N2O, CH4, CFC11, CFC12, CFC113,... | |
| frequency: mon | |
| initialization_method: 1 | |
| institute_id: CSIRO-BOM | |
| institution: CSIRO (Commonwealth Scientific and Industrial Research Organisation, Australia),... | |
| metadata: {cmor_table: CMIP5, dataset: ACCESS1-3, diagnostic: diagnostic1, end_year:... | |
| model_id: ACCESS1.3 | |
| modeling_realm: atmos | |
| parent_experiment: pre-industrial control | |
| parent_experiment_id: piControl | |
| parent_experiment_rip: r1i1p1 | |
| physics_version: 1 | |
| product: output | |
| project_id: CMIP5 | |
| realization: 1 | |
| references: See http://wiki.csiro.au/confluence/display/ACCESS/ACCESS+Publications | |
| source: ACCESS1-3 2011. Atmosphere: AGCM v1.0 (N96 grid-point, 1.875 degrees EW... | |
| table_id: Table Amon (27 April 2011) 9c851218e3842df9a62ef38b1e2575bb | |
| title: ACCESS1-3 model output prepared for CMIP5 historical | |
| version_number: v20120413 | |
| Cell methods: | |
| mean: time, {'project': 'CMIP5', 'dataset': 'ACCESS1-3', 'short_name': 'pr', 'cmor_table': 'CMIP5', 'mip': 'Amon'}) | |
| 2018-10-16 08:43:31,281 UTC [50059] DEBUG esmvaltool.preprocessor:231 Running preprocessor step concatenate | |
| 2018-10-16 08:43:31,283 UTC [50059] DEBUG esmvaltool.preprocessor:236 Running concatenate((<iris 'Cube' of precipitation_flux / (kg m-2 s-1) (time: 1872; latitude: 145; longitude: 192)>,), {}) | |
| 2018-10-16 08:43:31,285 UTC [50059] DEBUG esmvaltool.preprocessor:231 Running preprocessor step cmor_check_metadata | |
| 2018-10-16 08:43:31,285 UTC [50059] DEBUG esmvaltool.preprocessor:242 Running cmor_check_metadata(precipitation_flux / (kg m-2 s-1) (time: 1872; latitude: 145; longitude: 192) | |
| Dimension coordinates: | |
| time x - - | |
| latitude - x - | |
| longitude - - x | |
| Auxiliary coordinates: | |
| day_of_month x - - | |
| day_of_year x - - | |
| month_number x - - | |
| year x - - | |
| Attributes: | |
| Conventions: CF-1.4 | |
| _filename: /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/prepr... | |
| associated_files: baseURL: http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile: gridspec_atmos_fx_ACCESS1-3_historical_r0i0p0.nc... | |
| branch_time: 90945.0 | |
| cmor_version: 2.8.0 | |
| comment: at surface; includes both liquid and solid phases from all types of clouds... | |
| contact: The ACCESS wiki: http://wiki.csiro.au/confluence/display/ACCESS/Home. Contact... | |
| experiment: historical | |
| experiment_id: historical | |
| forcing: GHG, Oz, SA, Sl, Vl, BC, OC, (GHG = CO2, N2O, CH4, CFC11, CFC12, CFC113,... | |
| frequency: mon | |
| initialization_method: 1 | |
| institute_id: CSIRO-BOM | |
| institution: CSIRO (Commonwealth Scientific and Industrial Research Organisation, Australia),... | |
| metadata: {cmor_table: CMIP5, dataset: ACCESS1-3, diagnostic: diagnostic1, end_year:... | |
| model_id: ACCESS1.3 | |
| modeling_realm: atmos | |
| parent_experiment: pre-industrial control | |
| parent_experiment_id: piControl | |
| parent_experiment_rip: r1i1p1 | |
| physics_version: 1 | |
| product: output | |
| project_id: CMIP5 | |
| realization: 1 | |
| references: See http://wiki.csiro.au/confluence/display/ACCESS/ACCESS+Publications | |
| source: ACCESS1-3 2011. Atmosphere: AGCM v1.0 (N96 grid-point, 1.875 degrees EW... | |
| table_id: Table Amon (27 April 2011) 9c851218e3842df9a62ef38b1e2575bb | |
| title: ACCESS1-3 model output prepared for CMIP5 historical | |
| version_number: v20120413 | |
| Cell methods: | |
| mean: time, {'cmor_table': 'CMIP5', 'mip': 'Amon', 'short_name': 'pr'}) | |
| 2018-10-16 08:43:31,290 UTC [50059] DEBUG esmvaltool.preprocessor:231 Running preprocessor step extract_time | |
| 2018-10-16 08:43:31,290 UTC [50059] DEBUG esmvaltool.preprocessor:242 Running time_slice(precipitation_flux / (kg m-2 s-1) (time: 1872; latitude: 145; longitude: 192) | |
| Dimension coordinates: | |
| time x - - | |
| latitude - x - | |
| longitude - - x | |
| Auxiliary coordinates: | |
| day_of_month x - - | |
| day_of_year x - - | |
| month_number x - - | |
| year x - - | |
| Attributes: | |
| Conventions: CF-1.4 | |
| _filename: /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/prepr... | |
| associated_files: baseURL: http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile: gridspec_atmos_fx_ACCESS1-3_historical_r0i0p0.nc... | |
| branch_time: 90945.0 | |
| cmor_version: 2.8.0 | |
| comment: at surface; includes both liquid and solid phases from all types of clouds... | |
| contact: The ACCESS wiki: http://wiki.csiro.au/confluence/display/ACCESS/Home. Contact... | |
| experiment: historical | |
| experiment_id: historical | |
| forcing: GHG, Oz, SA, Sl, Vl, BC, OC, (GHG = CO2, N2O, CH4, CFC11, CFC12, CFC113,... | |
| frequency: mon | |
| initialization_method: 1 | |
| institute_id: CSIRO-BOM | |
| institution: CSIRO (Commonwealth Scientific and Industrial Research Organisation, Australia),... | |
| metadata: {cmor_table: CMIP5, dataset: ACCESS1-3, diagnostic: diagnostic1, end_year:... | |
| model_id: ACCESS1.3 | |
| modeling_realm: atmos | |
| parent_experiment: pre-industrial control | |
| parent_experiment_id: piControl | |
| parent_experiment_rip: r1i1p1 | |
| physics_version: 1 | |
| product: output | |
| project_id: CMIP5 | |
| realization: 1 | |
| references: See http://wiki.csiro.au/confluence/display/ACCESS/ACCESS+Publications | |
| source: ACCESS1-3 2011. Atmosphere: AGCM v1.0 (N96 grid-point, 1.875 degrees EW... | |
| table_id: Table Amon (27 April 2011) 9c851218e3842df9a62ef38b1e2575bb | |
| title: ACCESS1-3 model output prepared for CMIP5 historical | |
| version_number: v20120413 | |
| Cell methods: | |
| mean: time, {'yr1': 1850, 'yr2': 2006, 'mo1': 1, 'mo2': 1, 'd1': 1, 'd2': 1}) | |
| 2018-10-16 08:43:31,320 UTC [50059] DEBUG esmvaltool.preprocessor:231 Running preprocessor step fix_data | |
| 2018-10-16 08:43:31,320 UTC [50059] DEBUG esmvaltool.preprocessor:242 Running fix_data(precipitation_flux / (kg m-2 s-1) (time: 1872; latitude: 145; longitude: 192) | |
| Dimension coordinates: | |
| time x - - | |
| latitude - x - | |
| longitude - - x | |
| Auxiliary coordinates: | |
| day_of_month x - - | |
| day_of_year x - - | |
| month_number x - - | |
| year x - - | |
| Attributes: | |
| Conventions: CF-1.4 | |
| _filename: /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/prepr... | |
| associated_files: baseURL: http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile: gridspec_atmos_fx_ACCESS1-3_historical_r0i0p0.nc... | |
| branch_time: 90945.0 | |
| cmor_version: 2.8.0 | |
| comment: at surface; includes both liquid and solid phases from all types of clouds... | |
| contact: The ACCESS wiki: http://wiki.csiro.au/confluence/display/ACCESS/Home. Contact... | |
| experiment: historical | |
| experiment_id: historical | |
| forcing: GHG, Oz, SA, Sl, Vl, BC, OC, (GHG = CO2, N2O, CH4, CFC11, CFC12, CFC113,... | |
| frequency: mon | |
| initialization_method: 1 | |
| institute_id: CSIRO-BOM | |
| institution: CSIRO (Commonwealth Scientific and Industrial Research Organisation, Australia),... | |
| metadata: {cmor_table: CMIP5, dataset: ACCESS1-3, diagnostic: diagnostic1, end_year:... | |
| model_id: ACCESS1.3 | |
| modeling_realm: atmos | |
| parent_experiment: pre-industrial control | |
| parent_experiment_id: piControl | |
| parent_experiment_rip: r1i1p1 | |
| physics_version: 1 | |
| product: output | |
| project_id: CMIP5 | |
| realization: 1 | |
| references: See http://wiki.csiro.au/confluence/display/ACCESS/ACCESS+Publications | |
| source: ACCESS1-3 2011. Atmosphere: AGCM v1.0 (N96 grid-point, 1.875 degrees EW... | |
| table_id: Table Amon (27 April 2011) 9c851218e3842df9a62ef38b1e2575bb | |
| title: ACCESS1-3 model output prepared for CMIP5 historical | |
| version_number: v20120413 | |
| Cell methods: | |
| mean: time, {'project': 'CMIP5', 'dataset': 'ACCESS1-3', 'short_name': 'pr', 'cmor_table': 'CMIP5', 'mip': 'Amon'}) | |
| 2018-10-16 08:43:31,994 UTC [50059] WARNING esmvaltool.cmor.check:141 There were warnings in variable pr: | |
| pr: has values < valid_min = 0.0 | |
| in the cube that will be saved to file: /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/preproc/diagnostic1_pp1_pr/CMIP5_ACCESS1-3_Amon_historical_r1i1p1_T2Ms_pr_1850-2005.nc | |
| 2018-10-16 08:43:31,994 UTC [50059] DEBUG esmvaltool.preprocessor:231 Running preprocessor step seasonal_mean | |
| 2018-10-16 08:43:31,994 UTC [50059] DEBUG esmvaltool.preprocessor:242 Running seasonal_mean(precipitation_flux / (kg m-2 s-1) (time: 1872; latitude: 145; longitude: 192) | |
| Dimension coordinates: | |
| time x - - | |
| latitude - x - | |
| longitude - - x | |
| Auxiliary coordinates: | |
| day_of_month x - - | |
| day_of_year x - - | |
| month_number x - - | |
| year x - - | |
| Attributes: | |
| Conventions: CF-1.4 | |
| _filename: /Users/evert/code/fselten/esmvaltool_output/test_20181016_084328/prepr... | |
| associated_files: baseURL: http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile: gridspec_atmos_fx_ACCESS1-3_historical_r0i0p0.nc... | |
| branch_time: 90945.0 | |
| cmor_version: 2.8.0 | |
| comment: at surface; includes both liquid and solid phases from all types of clouds... | |
| contact: The ACCESS wiki: http://wiki.csiro.au/confluence/display/ACCESS/Home. Contact... | |
| experiment: historical | |
| experiment_id: historical | |
| forcing: GHG, Oz, SA, Sl, Vl, BC, OC, (GHG = CO2, N2O, CH4, CFC11, CFC12, CFC113,... | |
| frequency: mon | |
| initialization_method: 1 | |
| institute_id: CSIRO-BOM | |
| institution: CSIRO (Commonwealth Scientific and Industrial Research Organisation, Australia),... | |
| metadata: {cmor_table: CMIP5, dataset: ACCESS1-3, diagnostic: diagnostic1, end_year:... | |
| model_id: ACCESS1.3 | |
| modeling_realm: atmos | |
| parent_experiment: pre-industrial control | |
| parent_experiment_id: piControl | |
| parent_experiment_rip: r1i1p1 | |
| physics_version: 1 | |
| product: output | |
| project_id: CMIP5 | |
| realization: 1 | |
| references: See http://wiki.csiro.au/confluence/display/ACCESS/ACCESS+Publications | |
| source: ACCESS1-3 2011. Atmosphere: AGCM v1.0 (N96 grid-point, 1.875 degrees EW... | |
| table_id: Table Amon (27 April 2011) 9c851218e3842df9a62ef38b1e2575bb | |
| title: ACCESS1-3 model output prepared for CMIP5 historical | |
| version_number: v20120413 | |
| Cell methods: | |
| mean: time, {}) | |
| 2018-10-16 08:43:34,773 UTC [50059] DEBUG esmvaltool.preprocessor:231 Running preprocessor step cmor_check_data | |
| 2018-10-16 08:43:34,784 UTC [50059] DEBUG esmvaltool.preprocessor:242 Running cmor_check_data(None, {'cmor_table': 'CMIP5', 'mip': 'Amon', 'short_name': 'pr'}) | |
| 2018-10-16 08:43:34,784 UTC [50059] ERROR esmvaltool._main:209 Program terminated abnormally, see stack trace below for more information | |
| Traceback (most recent call last): | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/_main.py", line 204, in run | |
| conf = main(args) | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/_main.py", line 133, in main | |
| process_recipe(recipe_file=recipe, config_user=cfg) | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/_main.py", line 183, in process_recipe | |
| recipe.run() | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/_recipe.py", line 988, in run | |
| self.tasks, max_parallel_tasks=self._cfg['max_parallel_tasks']) | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/_task.py", line 473, in run_tasks | |
| _run_tasks_sequential(tasks) | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/_task.py", line 484, in _run_tasks_sequential | |
| task.run() | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/_task.py", line 184, in run | |
| input_files.extend(task.run()) | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/_task.py", line 185, in run | |
| self.output_files = self._run(input_files) | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/preprocessor/__init__.py", line 281, in _run | |
| input_files, self.settings, self.order, debug=self.debug) | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/preprocessor/__init__.py", line 206, in preprocess_multi_model | |
| debug) | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/preprocessor/__init__.py", line 243, in preprocess | |
| result.append(function(item, **args)) | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/cmor/check.py", line 606, in cmor_check_data | |
| checker(cube).check_data() | |
| File "/usr/local/miniconda3/envs/esmval2/lib/python3.6/site-packages/esmvaltool/cmor/check.py", line 166, in check_data | |
| if str(self._cube.units) != units: | |
| AttributeError: 'NoneType' object has no attribute 'units' |
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