Pathway count by organism in WikiPathways

wikipathways-by-organism.sh

# Get number of pathways by organism in WikiPathways
# Graph of output:
# https://docs.google.com/spreadsheets/d/1zZSqeKufuYxfFd3pFeMAUOjCm1sLRAw5SgJ4OJel9M8/edit?usp=sharing

# Fetch all organisms in WikiPathways
curl -s https://webservice.wikipathways.org/listOrganisms?format=json | jq .organisms[] > organisms-wikipathways.json

# Fetch all pathways in WikiPathways
curl -s https://webservice.wikipathways.org/listPathways?format=json | jq . > all-wikipathways.json

# Print all organisms in WikiPathways
cat organisms-wikipathways.json

# Count pathways by organism
cat organisms-wikipathways.json | xargs -I{} grep -c {} all-wikipathways.json