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smoors/easybuild_test_report_easyconfigs_pr7159_20180014-UTC-15-00-26.md

Created November 14, 2018 15:00
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EasyBuild test report for easyconfigs PR #7159
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easybuild_test_report_easyconfigs_pr7159_20180014-UTC-15-00-26.md

Test report for easybuilders/easybuild-easyconfigs#7159

Test result

Build succeeded for 41 out of 45 (11 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS SCOTCH-6.0.6-foss-2018a.eb
  • SUCCESS SCOTCH-6.0.6-foss-2018b.eb
  • SUCCESS SCOTCH-6.0.6-intel-2018a.eb
  • SUCCESS Boost.Python-1.66.0-foss-2018a-Python-3.6.4.eb
  • SUCCESS METIS-5.1.0-foss-2018b.eb
  • SUCCESS ParMETIS-4.0.3-foss-2018a.eb
  • SUCCESS ParaView-5.4.1-foss-2018a-mpi.eb
  • SUCCESS SuiteSparse-5.1.2-foss-2018a-METIS-5.1.0.eb
  • SUCCESS MPFR-4.0.1-GCCcore-6.4.0.eb
  • SUCCESS CGAL-4.11.1-foss-2018a-Python-2.7.14.eb
  • SUCCESS OpenFOAM-5.0-20180108-foss-2018a.eb
  • SUCCESS FIAT-2018.1.0-foss-2018a-Python-3.6.4.eb
  • SUCCESS Hypre-2.14.0-foss-2018a.eb
  • SUCCESS MATIO-1.5.12-GCCcore-6.4.0.eb
  • SUCCESS Qt5-5.10.1-intel-2018a.eb
  • SUCCESS UFL-2018.1.0-foss-2018a-Python-3.6.4.eb
  • SUCCESS Qt-4.8.7-intel-2018a.eb
  • SUCCESS MPFR-4.0.1-GCCcore-7.3.0.eb
  • SUCCESS PETSc-3.9.3-foss-2018a.eb
  • SUCCESS CGAL-4.11.1-intel-2018a-Python-2.7.14.eb
  • SUCCESS FFC-2018.1.0-foss-2018a-Python-3.6.4.eb
  • SUCCESS ParaView-5.4.1-intel-2018a-mpi.eb
  • SUCCESS OpenFOAM-5.0-20180108-intel-2018a.eb
  • SUCCESS OpenFOAM-6-intel-2018a.eb
  • SUCCESS CGAL-4.11.1-foss-2018a-Python-3.6.4.eb
  • SUCCESS GLM-0.9.9.0-GCCcore-6.4.0.eb
  • FAIL (build issue) Trilinos-12.12.1-foss-2018a-Python-3.6.4.eb (partial log available at https://gist.github.com/da40a159c100ff476b80085405bdca80)
  • SUCCESS SLEPc-3.9.2-foss-2018a.eb
  • SUCCESS PLY-3.11-foss-2018a-Python-3.6.4.eb
  • SUCCESS DBus-1.13.6-GCCcore-7.3.0.eb
  • SUCCESS NSPR-4.20-GCCcore-7.3.0.eb
  • SUCCESS NSS-3.39-GCCcore-7.3.0.eb
  • SUCCESS Qt5-5.10.1-foss-2018b.eb
  • SUCCESS CGAL-4.11.1-foss-2018b-Python-2.7.15.eb
  • SUCCESS ParaView-5.4.1-foss-2018b-mpi.eb
  • SUCCESS OpenFOAM-6-foss-2018b.eb
  • SUCCESS OpenFOAM-v1806-foss-2018b.eb
  • SUCCESS petsc4py-3.9.1-foss-2018a-Python-3.6.4.eb
  • SUCCESS slepc4py-3.9.0-foss-2018a-Python-3.6.4.eb
  • FAIL (build issue) SUNDIALS-2.7.0-foss-2018a.eb (partial log available at https://gist.github.com/bfe1a1db13e6aba15cddf25a8774e2dc)
  • SUCCESS CMake-3.12.1-GCCcore-6.4.0.eb
  • FAIL (build issue) patchelf-0.9-GCCcore-6.4.0.eb (partial log available at https://gist.github.com/a5f4d92c4258f23734abb54272948913)
  • SUCCESS pytest-3.8.0-foss-2018a-Python-3.6.4.eb
  • SUCCESS pybind11-2.2.4-foss-2018a-Python-3.6.4.eb
  • FAIL (build issue) DOLFIN-2018.1.0.post1-foss-2018a-Python-3.6.4.eb (partial log available at https://gist.github.com/c7c529bf63f2ab0c20dd3ac6b755b5d8)

Time info

  • start: Wed, 14 Nov 2018 10:23:40 +0000 (UTC)
  • end: Wed, 14 Nov 2018 15:00:18 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 3.7.2.dev0-r347e3b76569c029aab9e7d16cfaddb87af3b61e5
  • easybuild-easyblocks version: 3.7.2.dev0-rd0ea64a5bec2ce3074fa1b14be46dcbf3ba99be5
  • command line:
eb --from-pr=7159 --github-user=smoors --upload-test-report -dfr --test-report-env-filter=^SSH|USER|HOSTNAME|UID|.*COOKIE.*
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/smoors/build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/u/smoors/.local/easybuild/containers'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fixed-installdir-naming-scheme
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-module-depends-on
--disable-module-only
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-full-config
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--force
--from-pr='7159'
--github-user='smoors'
--ignore-dirs='.git,.svn'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--installpath='/work/smoors/ebtest/petsc'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/theia/scratch/work/smoors/hpc/easybuild-dev/easybuild-easyconfigs/easybuild/easyconfigs/s/SCOTCH'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--max-fail-ratio-adjust-permissions='0.5'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/u/smoors/.local/easybuild/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pr-target-repo='easybuild-easyconfigs'
--pre-create-installdir
--repository='FileRepository'
--repositorypath='/u/smoors/.local/easybuild/ebfiles_repo'
--robot-paths=''
--robot='/work/smoors/hpc/easybuild-dev/easybuild-easyconfigs/easybuild/easyconfigs'
--sourcepath='/work/smoors/sources:/apps/brussel/sources:/apps/gent/source'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--test-report-env-filter='^SSH|USER|HOSTNAME|UID|.*COOKIE.*'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'

System info

  • core count: 40
  • cpu model: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
  • cpu speed: 2400.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-28) (GCC) ;
  • glibc version: 2.17
  • hostname: nic420
  • os name: centos linux
  • os type: Linux
  • os version: 7.5.1804
  • platform name: x86_64-unknown-linux
  • python version: 2.7.5 (default, Apr 11 2018, 07:36:10) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-28)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python
  • total memory: 192072

List of loaded modules

  • (none)

Environment

BACKUP_MODULEPATH = /apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module/:/apps/brussel/commercial/orca/modules/all/:/apps/brussel/commercial/adf/module/
BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
EASYBUILD_BUILDPATH = /tmp/smoors/build
EASYBUILD_INSTALLPATH = /work/smoors/ebtest/petsc
EASYBUILD_SOURCEPATH = /work/smoors/sources:/apps/brussel/sources:/apps/gent/source
FANCYLOGGER_IGNORE_MPI4PY = 1
GIT_PS1_SHOWDIRTYSTATE = 1
GREP_OPTIONS = --color=auto
HISTCONTROL = ignoredups
HISTFILESIZE = 100000
HISTSIZE = 100000
HOME = /u/smoors
LANG = en_US.UTF-8
LC_ADDRESS = en_US.UTF-8
LC_IDENTIFICATION = en_US.UTF-8
LC_MEASUREMENT = en_US.UTF-8
LC_MONETARY = en_US.UTF-8
LC_NAME = en_US.UTF-8
LC_NUMERIC = en_US.UTF-8
LC_PAPER = en_US.UTF-8
LC_TELEPHONE = en_US.UTF-8
LC_TIME = en_DK.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_PKG = /usr/share/lmod/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SYSTEM_NAME = hydra-skylake
LMOD_VERSION = 7.8.6
LOGNAME = smoors
LS_COLORS = rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
MAIL = /var/spool/mail/smoors
MANPATH = /usr/local/share/man:/usr/share/man/overrides:/usr/share/man:/opt/ibutils/share/man:/usr/man:/cm/local/apps/environment-modules/current/share/man
MODULEPATH = /apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module
MODULESHOME = /usr/share/lmod/lmod
NAG_KUSARI_FILE = mn01.usr:
NCIPLOT_HOME = /u/smoors/progs/NCIPLOT
PATH = /work/smoors/hpc/easybuild-dev/easybuild-framework:/cm/shared/apps/mam/current/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/u/smoors/progs:/u/smoors/.local/bin:/u/smoors/software/openbabel-2.4.1/bin
PBS_HOME = /var/spool/torque
PWD = /u/smoors/hpc/easybuild-dev/easybuild-easyconfigs/easybuild/easyconfigs/s/SCOTCH
PYTHONOPTIMIZE = 1
PYTHONPATH = /work/smoors/hpc/easybuild-dev/easybuild-framework:/work/smoors/hpc/easybuild-dev/easybuild-easyblocks:/work/smoors/hpc/easybuild-dev/easybuild-easyconfigs:/work/smoors/hpc/easybuild-dev/vsc-base/lib:/work/smoors/hpc/easybuild-dev/vsc-install/lib:/u/smoors/lib/python:/u/smoors/hpc/sisc-scripts:
SHELL = /bin/bash
SHLVL = 2
TERM = xterm-256color
TMPDIR = /tmp/smoors
VSC_ARCH_LOCAL = skylake
VSC_DATA = /u/smoors
VSC_HOME = /u/smoors
VSC_INSTITUTE = brussel
VSC_INSTITUTE_CLUSTER = hydra
VSC_INSTITUTE_LOCAL = brussel
VSC_OS_LOCAL = CO7
VSC_SCRATCH = /work/smoors
VSC_SCRATCH_NODE = /tmp/smoors
WORKDIR = /work/smoors
XDG_RUNTIME_DIR = /run/user/197641
XDG_SESSION_ID = 6406
_ = /usr/bin/python2
_ModuleTable001_ = 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
_ModuleTable002_ = 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
_ModuleTable003_ = bC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZiL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNmEvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE1Yi9hbGw6Oi9hcHBzL2JydXNzZWwvY29tbWVyY2lhbC92YXNwL21vZHVsZTovYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvb3JjYS9tb2R1bGVzL2FsbDovYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvYWRmL21vZHVsZSIsfQ==
_ModuleTable_Sz_ = 3
__LMOD_REF_COUNT_MODULEPATH = /apps/brussel/CO7/skylake/modules/2018b/all:1;/apps/brussel/CO7/skylake/modules/2018a/all:1;/apps/brussel/CO7/skylake/modules/2017b/all:1;/apps/brussel/CO7/skylake/modules/2017a/all:1;/apps/brussel/CO7/skylake/modules/2016b/all:1;/apps/brussel/CO7/skylake/modules/2016a/all:1;/apps/brussel/CO7/skylake/modules/2015b/all:1;/apps/brussel/commercial/vasp/module:1;/apps/brussel/commercial/orca/modules/all:1;/apps/brussel/commercial/adf/module:1
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