Apps and packages to install on fresh macOS

packages.md

• Homebrew
  • Ruby https://www.ruby-lang.org/en/
  • Octave https://www.gnu.org/software/octave/
  • MacVim http://www.vim.org/
  • Python https://www.python.org/
  • Python3 https://www.python.org/
    • pip
    • jupyter
    • pygments
    • numpy
    • scipy
    • matplotlib
    • pandas
    • pymc3
    • cython
    • pillow
    • opencv
    • plotly.js
• CMake: https://cmake.org
• valgrind: http://valgrind.org
• Imagemagick: https://www.imagemagick.org/script/index.php
• hdf5: https://support.hdfgroup.org/HDF5/
• QGIS http://qgis.org/en/site/
• VirtualBox https://www.virtualbox.org/
• OpenCV + Python http://opencv.org/
• Intel MKL, IPP, TBB, and DAAL via free community licenses https://software.intel.com/en-us/articles/free-mkl
• Julia https://julialang.org/
• XQuartz https://www.xquartz.org/
• Gimp https://www.gimp.org/
• f.lux https://justgetflux.com/
• iTerm2 https://iterm2.com/
• Atom https://atom.io/
• Matlab if available https://www.mathworks.com/products/matlab.html
• Oh My Zsh http://ohmyz.sh/
• XCode https://developer.apple.com/xcode/
• Inkscape https://inkscape.org/en/
• Chrome https://www.google.com/chrome/browser/desktop/index.html
• Firefox https://www.mozilla.org/en-US/firefox/new/
• Node.js https://nodejs.org/en/
• Docker for Mac https://docs.docker.com/docker-for-mac/install/
• Wireshark https://www.wireshark.org/
• VLC http://www.videolan.org/vlc/
• R https://www.r-project.org/
• Handbrake https://handbrake.fr/
• ffmpeg http://ffmpeg.org/
• MacTeX full https://www.tug.org/mactex/
• JabRef http://www.jabref.org/
• Pandoc http://pandoc.org/