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fawaz-dabbaghieh / extracting_metadata.R
Created November 17, 2016 13:01
Simple function for extracting metadata from he DeepBlue server in R
deepblue_extract_metadata <- function(epi_mark,epi_project, auth_key) {
#get sample ids
experiments_ids <- deepblue_list_experiments(epigenetic_mark = epi_mark,
project = epi_project,
user_key = auth_key)
#extracting all information
metadata <- deepblue_info(deepblue_extract_ids(experiments_ids), user_key = auth_key)