Create, Save, Load Images with ITK in python

CreateSaveLoadImagesITKPython.py

#!/usr/bin/env python

import itk
import tempfile
import os

def pixel_type_from_IO(pixel, component,dimension):
    import itk
    if pixel == 'scalar':
        PixelType = component
    elif pixel == 'rgb':
        PixelType = itk.RGBPixel[component]
    elif pixel == 'rgba':
        PixelType = itk.RGBAPixel[component]
    elif pixel == 'offset':
        PixelType = itk.Offset[dimension]
    elif pixel == 'vector':
        PixelType = itk.Vector[component,dimension]
    elif pixel == 'point':
        PixelType = itk.Point[component,dimension]
    elif pixel == 'covariantvector':
        PixelType = itk.CovariantVector[component,dimension]
    elif pixel == 'symmetricsecondranktensor':
        PixelType = itk.SymmetricSecondRankTensor[component,dimension]
    elif pixel == 'diffusiontensor3d':
        PixelType = itk.DiffusionTensor3D[component]
    elif pixel == 'complex':
        PixelType = itk.complex[component]
    elif pixel == 'fixedarray':
        PixelType = itk.FixedArray[component,dimension]
    elif pixel == 'matrix':
        PixelType = itk.Matrix[component,dimension,dimension]
    else:
        raise RuntimeError("Unknown pixel type.")
    return PixelType


dimensions = [2,3] 
component_type_dic= {"float":itk.F, "double":itk.D,
        "unsigned_char":itk.UC, "unsigned_short":itk.US, "unsigned_int":itk.UI,
        "unsigned_long":itk.UL, "signed_char":itk.SC, "signed_short":itk.SS,
        "signed int":itk.SI, "signed_long":itk.SL, "bool":itk.B}
pixel_types = ['scalar', 'rgb', 'rgba',  'offset', 'vector', 'point', 'covariantvector', 'symmetricsecondranktensor', 'diffusiontensor3d', 'complex', 'fixedarray', 'matrix']
dir_name=tempfile.mkdtemp()
pixel_type_error = []
image_error = []
other_error = []
writer_error = []
reader_error = []
writer2_error = []
pixel_fill_error = []
for dim in dimensions:
    for p in pixel_types:
        for c,cv in component_type_dic.items():
            try:
                PixelType = pixel_type_from_IO(p,cv,dim)
            except Exception as ex:
                pixel_type_error.append(ex)
                continue
            try:
                ImageType=itk.Image[PixelType,dim]
                im=ImageType.New()
            except Exception as ex:
                image_error.append(ex)
                continue
            try:
                zero_value = itk.NumericTraits[PixelType].ZeroValue()
            except:
                try:
                    zero_value = PixelType()
                    zero_value.Fill(0)
                except:
                    try:
                        zero_value = PixelType(0)
                    except Exception as ex:
                        pixel_fill_error.append(ex)
            try:
                im.SetRegions(5)
                im.Allocate()
                im.FillBuffer( zero_value )
                filename = os.path.join(dir_name, "_".join([p,c,str(dim)])+".nrrd")
            except Exception as ex:
                other_error.append(ex)
                continue
            try:
                writer = itk.ImageFileWriter.New(Input=im, FileName=filename)
                writer.Update()
            except Exception as ex:
                writer_error.append(str(ex) + " - " +str([p,c,dim]))
                continue
            try:
                reader = itk.ImageFileReader.New(FileName=filename)
                reader.Update()
            except Exception as ex:
                reader_error.append(ex)
                continue
            try:
                filename = os.path.join(dir_name, "_".join([p,c,str(dim),"copy"])+".nrrd")
                writer = itk.ImageFileWriter.New(Input=reader, FileName=filename)
                writer.Update()
                print "%i ; %s ; %s - OK"%(dim,p,c)
            except Exception as ex:
                writer2_error.append(ex)
                pass

def PrintError(name,list_error):
    print name
    for i in list_error:
        print i

PrintError("Pixel Error", pixel_type_error)
PrintError("Pixel Fill Error:", pixel_fill_error)
PrintError("Image Error: ", image_error)
PrintError("Other Error: ", other_error)
PrintError("Writer Error: ", writer_error)
PrintError("Reader Error: ", reader_error)
PrintError("Writer2 Error: ", writer2_error)

Output.txt

2 ; scalar ; float - OK
2 ; scalar ; unsigned_char - OK
2 ; scalar ; signed_short - OK
2 ; rgb ; unsigned_char - OK
2 ; rgba ; unsigned_char - OK
2 ; vector ; float - OK
2 ; covariantvector ; float - OK
2 ; complex ; float - OK
3 ; scalar ; float - OK
3 ; scalar ; unsigned_char - OK
3 ; scalar ; signed_short - OK
3 ; rgb ; unsigned_char - OK
3 ; rgba ; unsigned_char - OK
3 ; vector ; float - OK
3 ; covariantvector ; float - OK
3 ; complex ; float - OK
Pixel Error
'itkTemplate : No template [<itkCType unsigned long>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType unsigned short>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType signed int>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType signed char>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType signed long>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType signed short>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType bool>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType unsigned int>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType unsigned long>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType unsigned short>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType signed int>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType signed char>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType signed long>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType signed short>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType bool>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType unsigned int>] for the itk::RGBAPixel class'
'itkTemplate : No template (<itkCType unsigned long>, 2) for the itk::Vector class'
'itkTemplate : No template (<itkCType unsigned short>, 2) for the itk::Vector class'
'itkTemplate : No template (<itkCType signed int>, 2) for the itk::Vector class'
'itkTemplate : No template (<itkCType signed char>, 2) for the itk::Vector class'
'itkTemplate : No template (<itkCType signed long>, 2) for the itk::Vector class'
'itkTemplate : No template (<itkCType bool>, 2) for the itk::Vector class'
'itkTemplate : No template (<itkCType unsigned int>, 2) for the itk::Vector class'
'itkTemplate : No template (<itkCType unsigned long>, 2) for the itk::Point class'
'itkTemplate : No template (<itkCType unsigned short>, 2) for the itk::Point class'
'itkTemplate : No template (<itkCType signed int>, 2) for the itk::Point class'
'itkTemplate : No template (<itkCType signed char>, 2) for the itk::Point class'
'itkTemplate : No template (<itkCType unsigned char>, 2) for the itk::Point class'
'itkTemplate : No template (<itkCType signed long>, 2) for the itk::Point class'
'itkTemplate : No template (<itkCType signed short>, 2) for the itk::Point class'
'itkTemplate : No template (<itkCType bool>, 2) for the itk::Point class'
'itkTemplate : No template (<itkCType unsigned int>, 2) for the itk::Point class'
'itkTemplate : No template (<itkCType unsigned long>, 2) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType unsigned short>, 2) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType signed int>, 2) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType signed char>, 2) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType unsigned char>, 2) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType signed long>, 2) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType signed short>, 2) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType bool>, 2) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType unsigned int>, 2) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType unsigned long>, 2) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType unsigned short>, 2) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType signed int>, 2) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType signed char>, 2) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType unsigned char>, 2) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType signed long>, 2) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType signed short>, 2) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType bool>, 2) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType unsigned int>, 2) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template [<itkCType unsigned long>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType unsigned short>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType signed int>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType signed char>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType unsigned char>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType signed long>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType signed short>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType bool>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType unsigned int>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType unsigned long>] for the std::complex class'
'itkTemplate : No template [<itkCType unsigned short>] for the std::complex class'
'itkTemplate : No template [<itkCType signed int>] for the std::complex class'
'itkTemplate : No template [<itkCType signed char>] for the std::complex class'
'itkTemplate : No template [<itkCType unsigned char>] for the std::complex class'
'itkTemplate : No template [<itkCType signed long>] for the std::complex class'
'itkTemplate : No template [<itkCType signed short>] for the std::complex class'
'itkTemplate : No template [<itkCType bool>] for the std::complex class'
'itkTemplate : No template [<itkCType unsigned int>] for the std::complex class'
'itkTemplate : No template (<itkCType signed int>, 2) for the itk::FixedArray class'
'itkTemplate : No template (<itkCType unsigned long>, 2, 2) for the itk::Matrix class'
'itkTemplate : No template (<itkCType unsigned short>, 2, 2) for the itk::Matrix class'
'itkTemplate : No template (<itkCType signed int>, 2, 2) for the itk::Matrix class'
'itkTemplate : No template (<itkCType signed char>, 2, 2) for the itk::Matrix class'
'itkTemplate : No template (<itkCType unsigned char>, 2, 2) for the itk::Matrix class'
'itkTemplate : No template (<itkCType signed long>, 2, 2) for the itk::Matrix class'
'itkTemplate : No template (<itkCType signed short>, 2, 2) for the itk::Matrix class'
'itkTemplate : No template (<itkCType bool>, 2, 2) for the itk::Matrix class'
'itkTemplate : No template (<itkCType unsigned int>, 2, 2) for the itk::Matrix class'
'itkTemplate : No template [<itkCType unsigned long>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType unsigned short>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType signed int>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType signed char>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType signed long>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType signed short>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType bool>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType unsigned int>] for the itk::RGBPixel class'
'itkTemplate : No template [<itkCType unsigned long>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType unsigned short>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType signed int>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType signed char>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType signed long>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType signed short>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType bool>] for the itk::RGBAPixel class'
'itkTemplate : No template [<itkCType unsigned int>] for the itk::RGBAPixel class'
'itkTemplate : No template (<itkCType unsigned long>, 3) for the itk::Vector class'
'itkTemplate : No template (<itkCType unsigned short>, 3) for the itk::Vector class'
'itkTemplate : No template (<itkCType signed int>, 3) for the itk::Vector class'
'itkTemplate : No template (<itkCType signed char>, 3) for the itk::Vector class'
'itkTemplate : No template (<itkCType signed long>, 3) for the itk::Vector class'
'itkTemplate : No template (<itkCType bool>, 3) for the itk::Vector class'
'itkTemplate : No template (<itkCType unsigned int>, 3) for the itk::Vector class'
'itkTemplate : No template (<itkCType unsigned long>, 3) for the itk::Point class'
'itkTemplate : No template (<itkCType unsigned short>, 3) for the itk::Point class'
'itkTemplate : No template (<itkCType signed int>, 3) for the itk::Point class'
'itkTemplate : No template (<itkCType signed char>, 3) for the itk::Point class'
'itkTemplate : No template (<itkCType unsigned char>, 3) for the itk::Point class'
'itkTemplate : No template (<itkCType signed long>, 3) for the itk::Point class'
'itkTemplate : No template (<itkCType signed short>, 3) for the itk::Point class'
'itkTemplate : No template (<itkCType bool>, 3) for the itk::Point class'
'itkTemplate : No template (<itkCType unsigned int>, 3) for the itk::Point class'
'itkTemplate : No template (<itkCType unsigned long>, 3) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType unsigned short>, 3) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType signed int>, 3) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType signed char>, 3) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType unsigned char>, 3) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType signed long>, 3) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType signed short>, 3) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType bool>, 3) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType unsigned int>, 3) for the itk::CovariantVector class'
'itkTemplate : No template (<itkCType unsigned long>, 3) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType unsigned short>, 3) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType signed int>, 3) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType signed char>, 3) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType unsigned char>, 3) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType signed long>, 3) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType signed short>, 3) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType bool>, 3) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template (<itkCType unsigned int>, 3) for the itk::SymmetricSecondRankTensor class'
'itkTemplate : No template [<itkCType unsigned long>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType unsigned short>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType signed int>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType signed char>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType unsigned char>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType signed long>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType signed short>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType bool>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType unsigned int>] for the itk::DiffusionTensor3D class'
'itkTemplate : No template [<itkCType unsigned long>] for the std::complex class'
'itkTemplate : No template [<itkCType unsigned short>] for the std::complex class'
'itkTemplate : No template [<itkCType signed int>] for the std::complex class'
'itkTemplate : No template [<itkCType signed char>] for the std::complex class'
'itkTemplate : No template [<itkCType unsigned char>] for the std::complex class'
'itkTemplate : No template [<itkCType signed long>] for the std::complex class'
'itkTemplate : No template [<itkCType signed short>] for the std::complex class'
'itkTemplate : No template [<itkCType bool>] for the std::complex class'
'itkTemplate : No template [<itkCType unsigned int>] for the std::complex class'
'itkTemplate : No template (<itkCType signed int>, 3) for the itk::FixedArray class'
'itkTemplate : No template (<itkCType unsigned long>, 3, 3) for the itk::Matrix class'
'itkTemplate : No template (<itkCType unsigned short>, 3, 3) for the itk::Matrix class'
'itkTemplate : No template (<itkCType signed int>, 3, 3) for the itk::Matrix class'
'itkTemplate : No template (<itkCType signed char>, 3, 3) for the itk::Matrix class'
'itkTemplate : No template (<itkCType unsigned char>, 3, 3) for the itk::Matrix class'
'itkTemplate : No template (<itkCType signed long>, 3, 3) for the itk::Matrix class'
'itkTemplate : No template (<itkCType signed short>, 3, 3) for the itk::Matrix class'
'itkTemplate : No template (<itkCType bool>, 3, 3) for the itk::Matrix class'
'itkTemplate : No template (<itkCType unsigned int>, 3, 3) for the itk::Matrix class'
Pixel Fill Error:
Image Error: 
'itkTemplate : No template (<itkCType unsigned short>, 2) for the itk::Image class'
'itkTemplate : No template (<itkCType signed int>, 2) for the itk::Image class'
'itkTemplate : No template (<itkCType signed char>, 2) for the itk::Image class'
'itkTemplate : No template (<itkCType signed long>, 2) for the itk::Image class'
'itkTemplate : No template (<itkCType unsigned int>, 2) for the itk::Image class'
"itkTemplate : No template (<class 'itkRGBPixelPython.itkRGBPixelF'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkRGBPixelPython.itkRGBPixelD'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkRGBAPixelPython.itkRGBAPixelF'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkRGBAPixelPython.itkRGBAPixelD'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkVectorPython.itkVectorUC2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkVectorPython.itkVectorSS2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkPointPython.itkPointF2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkPointPython.itkPointD2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkSymmetricSecondRankTensorPython.itkSymmetricSecondRankTensorF2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkDiffusionTensor3DPython.itkDiffusionTensor3DF'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkDiffusionTensor3DPython.itkDiffusionTensor3DD'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'vcl_complexPython.vcl_complexD'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayUL2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayUS2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArraySC2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayUC2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArraySL2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArraySS2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayD2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayB2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayUI2'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkMatrixPython.itkMatrixF22'>, 2) for the itk::Image class"
"itkTemplate : No template (<class 'itkMatrixPython.itkMatrixD22'>, 2) for the itk::Image class"
'itkTemplate : No template (<itkCType unsigned short>, 3) for the itk::Image class'
'itkTemplate : No template (<itkCType signed int>, 3) for the itk::Image class'
'itkTemplate : No template (<itkCType signed char>, 3) for the itk::Image class'
'itkTemplate : No template (<itkCType signed long>, 3) for the itk::Image class'
'itkTemplate : No template (<itkCType unsigned int>, 3) for the itk::Image class'
"itkTemplate : No template (<class 'itkRGBPixelPython.itkRGBPixelF'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkRGBPixelPython.itkRGBPixelD'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkRGBAPixelPython.itkRGBAPixelF'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkRGBAPixelPython.itkRGBAPixelD'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkVectorPython.itkVectorUC3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkVectorPython.itkVectorSS3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkPointPython.itkPointF3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkPointPython.itkPointD3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkSymmetricSecondRankTensorPython.itkSymmetricSecondRankTensorF3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkDiffusionTensor3DPython.itkDiffusionTensor3DF'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkDiffusionTensor3DPython.itkDiffusionTensor3DD'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'vcl_complexPython.vcl_complexD'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayUL3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayUS3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArraySC3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayUC3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArraySL3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArraySS3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayD3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayB3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkFixedArrayPython.itkFixedArrayUI3'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkMatrixPython.itkMatrixF33'>, 3) for the itk::Image class"
"itkTemplate : No template (<class 'itkMatrixPython.itkMatrixD33'>, 3) for the itk::Image class"
Other Error: 
Writer Error: 
No suitable template parameter can be found. - ['scalar', 'unsigned_long', 2]
No suitable template parameter can be found. - ['scalar', 'double', 2]
No suitable template parameter can be found. - ['scalar', 'bool', 2]
No suitable template parameter can be found. - ['offset', 'float', 2]
No suitable template parameter can be found. - ['offset', 'unsigned_long', 2]
No suitable template parameter can be found. - ['offset', 'unsigned_short', 2]
No suitable template parameter can be found. - ['offset', 'signed int', 2]
No suitable template parameter can be found. - ['offset', 'signed_char', 2]
No suitable template parameter can be found. - ['offset', 'unsigned_char', 2]
No suitable template parameter can be found. - ['offset', 'signed_long', 2]
No suitable template parameter can be found. - ['offset', 'signed_short', 2]
No suitable template parameter can be found. - ['offset', 'double', 2]
No suitable template parameter can be found. - ['offset', 'bool', 2]
No suitable template parameter can be found. - ['offset', 'unsigned_int', 2]
No suitable template parameter can be found. - ['vector', 'double', 2]
No suitable template parameter can be found. - ['covariantvector', 'double', 2]
No suitable template parameter can be found. - ['symmetricsecondranktensor', 'double', 2]
No suitable template parameter can be found. - ['fixedarray', 'float', 2]
No suitable template parameter can be found. - ['scalar', 'unsigned_long', 3]
No suitable template parameter can be found. - ['scalar', 'double', 3]
No suitable template parameter can be found. - ['scalar', 'bool', 3]
No suitable template parameter can be found. - ['offset', 'float', 3]
No suitable template parameter can be found. - ['offset', 'unsigned_long', 3]
No suitable template parameter can be found. - ['offset', 'unsigned_short', 3]
No suitable template parameter can be found. - ['offset', 'signed int', 3]
No suitable template parameter can be found. - ['offset', 'signed_char', 3]
No suitable template parameter can be found. - ['offset', 'unsigned_char', 3]
No suitable template parameter can be found. - ['offset', 'signed_long', 3]
No suitable template parameter can be found. - ['offset', 'signed_short', 3]
No suitable template parameter can be found. - ['offset', 'double', 3]
No suitable template parameter can be found. - ['offset', 'bool', 3]
No suitable template parameter can be found. - ['offset', 'unsigned_int', 3]
No suitable template parameter can be found. - ['vector', 'double', 3]
No suitable template parameter can be found. - ['covariantvector', 'double', 3]
No suitable template parameter can be found. - ['symmetricsecondranktensor', 'double', 3]
No suitable template parameter can be found. - ['fixedarray', 'float', 3]
Reader Error: 
Writer2 Error: