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Federico Marini federicomarini

  • University Medical Center, Mainz
  • Mainz
  • Twitter @FedeBioinfo
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federicomarini / iSEE_plug.R
Last active Aug 20, 2020
A function to wrap up the DESeq2 inputs&outputs, and plug that as SingleCellExperiment into iSEE
View iSEE_plug.R
library(DESeq2)
wrapup_for_iSEE <- function(dds, res) {
# dds to vst
vst <- vst(dds)
# initialize the container
se <- SummarizedExperiment(
assays = List(
counts = counts(dds),
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