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/ iSEE_plug.R
Last active
April 20, 2023 09:54
A function to wrap up the DESeq2 inputs&outputs, and plug that as SingleCellExperiment into iSEE
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| library(DESeq2) | |
| wrapup_for_iSEE <- function(dds, res) { | |
| # dds to vst | |
| vst <- vst(dds) | |
| # initialize the container | |
| se <- SummarizedExperiment( | |
| assays = List( | |
| counts = counts(dds), |