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fedorov/metadata.json

Created April 26, 2017 21:32
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dcmqi metadata JSON for the FreeSurfer brain label conversion use case
Raw
metadata.json
{
"ContentCreatorName": "FreeSurfer",
"ClinicalTrialSeriesID": "Session1",
"ClinicalTrialTimePointID": "1",
"SeriesDescription": "Segmentation",
"SeriesNumber": "300",
"InstanceNumber": "1",
"BodyPartExamined": "BRAIN",
"segmentAttributes": [
[
{
"labelID": 1,
"SegmentDescription": "Brain mask",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A0100",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Brain"
},
"recommendedDisplayRGBValue": [
250,
250,
225
]
},
{
"labelID": 2,
"SegmentDescription": "Left hemisphere",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A1600",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Brain ventricle"
},
"SegmentedPropertyTypeModifierCodeSequence": {
"CodeValue": "G-A101",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Left"
},
"recommendedDisplayRGBValue": [
88,
106,
215
]
},
{
"labelID": 3,
"SegmentDescription": "Right hemisphere",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A1600",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Brain ventricle"
},
"SegmentedPropertyTypeModifierCodeSequence": {
"CodeValue": "G-A100",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Right"
},
"recommendedDisplayRGBValue": [
88,
106,
215
]
},
{
"labelID": 4,
"SegmentDescription": "Gray matter",
"SegmentAlgorithmType": "SEMIAUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A0096",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Gray Matter"
},
"recommendedDisplayRGBValue": [
200,
200,
235
]
},
{
"labelID": 5,
"SegmentDescription": "White matter",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A0095",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "White Matter"
},
"recommendedDisplayRGBValue": [
250,
250,
210
]
}
]
],
"ContentLabel": "SEGMENTATION",
"ContentDescription": "Image segmentation",
"ClinicalTrialCoordinatingCenterName": "dcmqi"
}
Raw
metadata_codes_updated.json
{
"ContentCreatorName": "FreeSurfer",
"ClinicalTrialSeriesID": "Session1",
"ClinicalTrialTimePointID": "1",
"SeriesDescription": "Segmentation",
"SeriesNumber": "300",
"InstanceNumber": "1",
"BodyPartExamined": "BRAIN",
"segmentAttributes": [
[
{
"labelID": 1,
"SegmentDescription": "Brain mask",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A0100",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Brain"
},
"recommendedDisplayRGBValue": [
250,
250,
225
]
},
{
"labelID": 2,
"SegmentDescription": "Left hemisphere",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A010F",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Cerebral hemisphere"
},
"SegmentedPropertyTypeModifierCodeSequence": {
"CodeValue": "G-A101",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Left"
},
"recommendedDisplayRGBValue": [
88,
106,
215
]
},
{
"labelID": 3,
"SegmentDescription": "Right hemisphere",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A010F",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Cerebral hemisphere"
},
"SegmentedPropertyTypeModifierCodeSequence": {
"CodeValue": "G-A100",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Right"
},
"recommendedDisplayRGBValue": [
88,
106,
215
]
},
{
"labelID": 4,
"SegmentDescription": "Gray matter",
"SegmentAlgorithmType": "SEMIAUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A0096",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Gray Matter"
},
"recommendedDisplayRGBValue": [
200,
200,
235
]
},
{
"labelID": 5,
"SegmentDescription": "White matter",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A0095",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "White Matter"
},
"recommendedDisplayRGBValue": [
250,
250,
210
]
}
]
],
"ContentLabel": "SEGMENTATION",
"ContentDescription": "Image segmentation",
"ClinicalTrialCoordinatingCenterName": "dcmqi"
}
Raw
metadata_three_inner_lists.json
{
"ContentCreatorName": "FreeSurfer",
"ClinicalTrialSeriesID": "Session1",
"ClinicalTrialTimePointID": "1",
"SeriesDescription": "Segmentation",
"SeriesNumber": "300",
"InstanceNumber": "1",
"BodyPartExamined": "BRAIN",
"segmentAttributes": [
[
{
"labelID": 1,
"SegmentDescription": "Brain mask",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A0100",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Brain"
},
"recommendedDisplayRGBValue": [
250,
250,
225
]
}
],
[
{
"labelID": 2,
"SegmentDescription": "Left hemisphere",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A010F",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Cerebral hemisphere"
},
"SegmentedPropertyTypeModifierCodeSequence": {
"CodeValue": "G-A101",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Left"
},
"recommendedDisplayRGBValue": [
88,
106,
215
]
},
{
"labelID": 3,
"SegmentDescription": "Right hemisphere",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A010F",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Cerebral hemisphere"
},
"SegmentedPropertyTypeModifierCodeSequence": {
"CodeValue": "G-A100",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Right"
},
"recommendedDisplayRGBValue": [
88,
106,
215
]
}
],
[
{
"labelID": 4,
"SegmentDescription": "Gray matter",
"SegmentAlgorithmType": "SEMIAUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A0096",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Gray Matter"
},
"recommendedDisplayRGBValue": [
200,
200,
235
]
},
{
"labelID": 5,
"SegmentDescription": "White matter",
"SegmentAlgorithmType": "AUTOMATIC",
"SegmentAlgorithmName": "FreeSurfer",
"SegmentedPropertyCategoryCodeSequence": {
"CodeValue": "T-D000A",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "Anatomical Structure"
},
"SegmentedPropertyTypeCodeSequence": {
"CodeValue": "T-A0095",
"CodingSchemeDesignator": "SRT",
"CodeMeaning": "White Matter"
},
"recommendedDisplayRGBValue": [
250,
250,
210
]
}
]
],
"ContentLabel": "SEGMENTATION",
"ContentDescription": "Image segmentation",
"ClinicalTrialCoordinatingCenterName": "dcmqi"
}
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